pka, log p, log d and absorption

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impact of physicochemical parameters like pka, log P, log D on absorption. Why log D is better than log P?

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Page 1: pKa, log P, log D and absorption
Page 2: pKa, log P, log D and absorption

Important parameters Physical-Chemical parameter:

◦ Solubility◦ Lipophilicity/Hydrophilicity◦ Salt for and polymorps◦ Chemical stability◦ particle and powder properties◦ pKa and ionization

Page 3: pKa, log P, log D and absorption

Formulation principles Biological principles

◦ Absorption◦ Distribution◦ Metabolism◦ Elimination

Page 4: pKa, log P, log D and absorption

For transportation of drug, it should be in solution and non-ionized.

But non-ionized form have higher lipophilicity, and thus lower solubility.

At physiological pH, the drug will be in both ionized and unionized form. The non-ionized spp. will get absorbed and thus it is regenerated for maintenance of equilibrium between ionized-non ionized spp.

Page 5: pKa, log P, log D and absorption

Ionisation can be calculated using the Henderson Hasselbalch relationships:

Acid: pH = pKa + log10[A-]/[HA][A-]/[HA] =10(pH-pKa)

Base:pH = pKa -log10[BH+]/[B] [BH+]/[B] =10(pKa-pH)

Page 6: pKa, log P, log D and absorption

pKa values are temperature dependent in a non-linear and unpredictable way. Standard practice is to measure pKa’s at 25°C

Fractions of individual ionised forms can be rapidly calculated from either macro-or micro-pKa’s.

% ionized = 100/[1+10x(pH-pKa)], where x=-1 for acid, and x=1 for base.

Page 7: pKa, log P, log D and absorption

Acid Base

The solubility of acidic compounds increases as the pH of the solution is increased (above the pKa) and the solubility of basic compounds increases as the pH is lowered below the pKa.

Page 8: pKa, log P, log D and absorption

macro pKa

micro pKa

Page 9: pKa, log P, log D and absorption

For molecules with one acidic and one basic group denote xa= 10[pH-pKa(Acid)] and xb= 10[pKa(Base)-pH]

Neutral fraction F0= 1 / [xa+ xaxb+ xb+1] Zwitterion fraction F±= xaxb/ [xa+ xaxb+

xb+1] Cation fraction F+= xb/ [xa+ xaxb+ xb+1] Anion fraction F-= xa/ [xa+ xaxb+ xb+1]

Page 10: pKa, log P, log D and absorption

Fraction of Labetolol at pH 7.0

Calculated pKa

F+ F± F0 F-

Macro pKa pKa1=7.5 pka2=9.2

0.75 0.24 0.005 0

Micro pKa pKa1=7.5 pka2=8.8

pKa3=9.1

pka4=7.8

0.72 0.27 0.01 0

Page 11: pKa, log P, log D and absorption

About 85% of marketed drugs contain functional groups that are ionised to some extent at physiological pH (pH 1.5 – 8).

The acidity or basicity of a compound plays a major role in controlling:

Absorption and transport to site of action•Solubility, bioavailability, absorption and cell penetration, plasma binding, volume of distribution

Binding of a compound at its site of action• un-ionised form involved in hydrogen bonding• ionised form influences strength of salt bridges or H-bonds

Elimination of compound• Biliary and renal excretion• CYP P450 metabolism

Page 12: pKa, log P, log D and absorption

Fluid pH

Aqueous humour 7.2

Blood 7.4

Colon 5-8

Duodenum (fasting) 4.4-6.6

Duodenum (fed) 5.2-6.2

Saliva 6.4

Small intestine 6.5

Stomach (fasting) 1.4-2.1

Stomach (fed) 3-7

Sweat 5.4

Urine 5.5-7

So the same compound will be ionised to different extents in different parts of the body.

This means that, for example, basic compounds will not be so well absorbed in the stomach than acidic compounds since it is generally the unionised form of the drug which diffuses into the blood stream.

Page 13: pKa, log P, log D and absorption

http://www.manuelsweb.com/pka.htm http://www.raell.demon.co.uk/chem/calcs/Lo

gP/perion.htm

E.g., A basic drug with a pKa of 7.8 is a known teratogen. If given IV to a pregnant woman whose blood pH is 7.4, will this drug cross the placenta and effect the baby?

Page 14: pKa, log P, log D and absorption
Page 15: pKa, log P, log D and absorption
Page 16: pKa, log P, log D and absorption

From pH 11 to 7 potency increases since active species is the anion.

From pH 7 to 3 potency decreases since only the neutral form of the compound can transport into the cell.

Page 17: pKa, log P, log D and absorption

Aminoglycosides (e.g., gentamicin) are the exception to the general rule in that the uncharged species is insufficiently lipid soluble to cross the membrane appreciably. This is due to a preponderance of hydrogen bonding groups in the sugar moiety that render the uncharged molecule hydrophilic.

Page 18: pKa, log P, log D and absorption

It is a measure of the relative affinity of a molecule for the lipid and aqueous phases in the absence of ionisation.

Octanol/water system is mostly used because◦ Po/w is fairly easy to measure◦ Po/w often correlates well with many biological

properties◦ It can be predicted fairly accurately using

computational models

Page 19: pKa, log P, log D and absorption

For CNS penetration around Log P = 2 ±0.7

For Oral absorption around Log P = 1.8 For Intestinal absorption Log P =1.35 For Colonic absorption Log P = 1.32 For Sub lingual absorption Log P = 5.5 For Percutaneous Log P = 2.6 (& low mw)

Page 20: pKa, log P, log D and absorption

Injectable -Low Log P (below 0) Oral -Medium (0-3) Transdermal -High (3-4) Toxic build up in fatty tissues - Very

High (4-7)

Page 21: pKa, log P, log D and absorption

logPBinding to enzyme / receptor

Aqueous solubility

Binding to P450

metabolising enzymes

Absorption through membrane

Binding to blood / tissue proteins – less drug free to act

Binding to hERG heart ion channel -cardiotoxicity risk

So log P needs to be optimised

Page 22: pKa, log P, log D and absorption
Page 23: pKa, log P, log D and absorption

Elimination Transporter effects on drug disposition

Page 24: pKa, log P, log D and absorption

It is the effective lipophilicity of a compound at a given pH, and is a function of both the lipophilicity of the un-ionised compound and the degree of ionisation.

Page 25: pKa, log P, log D and absorption

N

O

OOH

O

Cl

0.001% neutral

0.01%

0.1%

1%

10%

50% neutral

pKa=4.50

logP=4.25

For singly ionising acids in general:

log D = log P - log[1 + 10(pH-pKa)]

Relationship between logD, logP and pH for an acidic drug

-2

-1

0

1

2

3

4

5

2 3 4 5 6 7 8 9 10

pH

log

D

Indomethacin

Page 26: pKa, log P, log D and absorption

Amlodipine

pKa=9.3

For singly ionising bases in general:

logD = logP - log[1 + 10(pKa-pH)]

pH - Distribution behaviour of bases

-3

-2

-1

0

1

2

3

4

-4

3 4 5 6 7 8 9 10 11

pH

log

D

NH

O

O

O

OCl

O

NH2

NH

O

O

O

OCl

O

NH3+

N

NH

SNH

N

NH

CN

CimetidinepKa=6.8

NH+

NH

SNH

N

NH

CN

Page 27: pKa, log P, log D and absorption

-2.5

-2

-1.5

-1

-0.5

0

0.5

2 3 4 5 6 7 8 9 10 11 12

pH

log

D

pH - Distribution behaviour of amphoteric compounds OH

NH2

pKa1 = 4.4

OH

NH3+

O

NH2

pKa2 = 9.8

Page 28: pKa, log P, log D and absorption

To address lipophilicity concerns many companies have deployed computational alerts based on Log P which can lead to incorrect conclusions for ionizable compounds.

The log P should be calculated at pH where the drug is in neutral/un-ionized form.

Page 29: pKa, log P, log D and absorption

pKa Ionization Center

4.8 Pyridine

10.9 Piperidine

Page 30: pKa, log P, log D and absorption

The compound shows a preference to be associated with the lipid phase (>30 fold affinity for octanol over water).

Will likely permeate biological membranes

Page 31: pKa, log P, log D and absorption

It is obvious from this plot of log D versus pH, that ionization of the compound greatly affects octanol-water partitioning and that lipophilicity cannot be simplified to a constant.

Negative values of logD (-1.44 to 0) in the physiologically relevant pH range (pH 1–8) lead us to conclude that this compound would be more susceptible to higher aqueous solubility and of lower lipophilicity in the body.