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IOITIOIT--HCM Grid on VINAREN Network & HCM Grid on VINAREN Network & Research for eResearch for e--Science ApplicationsScience Applications
Tran Van Lang, Do Van Long, Dao Van TuyetTran Van Lang, Do Van Long, Dao Van Tuyet
Member of Member of VNGridVNGrid Project.Project.
Ho Chi Minh City Institute of Information Technology (IOITHo Chi Minh City Institute of Information Technology (IOIT--HCM),HCM),
Vietnamese Academy of Science & Technology Vietnamese Academy of Science & Technology
The APAN 25th MeetingThe APAN 25th MeetingJan 23Jan 23--25, 200825, 2008
University of Hawaii, Hawaii USA University of Hawaii, Hawaii USA
ContentContent
�� IntroductionIntroduction
�� IOITIOIT--HCM Grid for eHCM Grid for e--ScienceScience
�� Design Grid on VINAREN NetworkDesign Grid on VINAREN Network�� Design Grid on VINAREN NetworkDesign Grid on VINAREN Network
�� Grid Collaboration in Vietnam: now and Grid Collaboration in Vietnam: now and futurefuture
�� ConclusionConclusion
IntroductionIntroduction
Ho Chi Minh City Institute of Ho Chi Minh City Institute of Information Technology (IOITInformation Technology (IOIT--HCM)HCM)
VIETNAMESE ACADEMY OF VIETNAMESE ACADEMY OF SCIENCE & TECHNOLOGY (VAST)SCIENCE & TECHNOLOGY (VAST)SCIENCE & TECHNOLOGY (VAST)SCIENCE & TECHNOLOGY (VAST)
IOITIOIT--HCM Grid HCM Grid Team MembersTeam Members
IOITIOIT--HCM Grid for eHCM Grid for e--sciencescience
�� From 01/2004: From 01/2004: ReseachReseach Grid InfrastructureGrid Infrastructure
�� From 09/2004: Grid for Science applications: From 09/2004: Grid for Science applications: �� From 09/2004: Grid for Science applications: From 09/2004: Grid for Science applications: BBioinformatics, ioinformatics, Access Grid, eAccess Grid, e--HealthHealth
�� From 03/2006: Connected to From 03/2006: Connected to FragmaFragma
�� From 11/2007: Connected to From 11/2007: Connected to TWGridTWGrid
Infrastructure of IOITInfrastructure of IOIT--HCM Grid System for ResearchHCM Grid System for Research
PHÂN VIỆN CÔNG NGHỆ PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ THÔNG TIN TẠI TP. HỒ CHÍ
MINH (IOITMINH (IOIT--HCM)HCM) 66
Configuration of IOITConfiguration of IOIT--HCM Grid Site HCM Grid Site with with GLiteGLite
wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org voms.grid.sinica.edu.tw
Internet
se.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.orglfc.ioit-hcm.vngrid.org
Research for bioscience on GridResearch for bioscience on Grid
Why Why BioScienceBioScience ?!?!
�� Bioinformatics, biology and biomedical research Bioinformatics, biology and biomedical research have advanced rapidly in the last few years, with have advanced rapidly in the last few years, with increased involvement of interdisciplinary teams, increased involvement of interdisciplinary teams, largelarge--scale computational models, distributed scale computational models, distributed largelarge--scale computational models, distributed scale computational models, distributed data archives and highdata archives and high--throughput throughput instrumentation. instrumentation.
�� “The major biomedical breakthroughs can “The major biomedical breakthroughs can only only be made possiblebe made possible through the through the use of high use of high performance computing, grid computing performance computing, grid computing and and data management technologies and tools”data management technologies and tools”
Generating the Generating the PhylogeneticPhylogenetictree on IOITtree on IOIT--HCM GridHCM Grid
Research Protein structure Research Protein structure Prediction on IOITPrediction on IOIT--HCM GridHCM Grid
The objective of this function is to this function is to
docking and Molecular Dynamics simulations, which usually take a very
long time to complete the
analysis
Blast deploying on IOIT-HCM Grid
Searching sequence from a huge of genome database stored in storage Searching sequence from a huge of genome database stored in storage element on main grid node on element on main grid node on GLiteGLite
Get Blast results from Get Blast results from IOITIOIT--HCM Grid PortalHCM Grid Portal
Research for Access GridResearch for Access Grid
�� Access Grid for Access Grid for collaboration and collaboration and Video ConferencingVideo Conferencing
IOITIOIT--HCM supported HCM supported
the Conference on IT the Conference on IT the Conference on IT the Conference on IT and Communication in and Communication in Haiphong Province, Haiphong Province, Vietnam (10/2005)Vietnam (10/2005)
Meeting Room 1 2nd Floor – Block 1
Meeting Room 32nd Floor – Block 22 Floor – Block 1
Meeting Room 21st Floor – Block 2
Center Room1st Floor – Block 1
Research for eResearch for e--HealthHealth
Telemedicine between Telemedicine between NhiNhi Dong 1 Hospital Dong 1 Hospital (Ho Chi Minh City, Vietnam) (Ho Chi Minh City, Vietnam) and and Nguyen Dinh Nguyen Dinh ChieuChieu (Ben (Ben TreTre Province, Vietnam)Province, Vietnam)Deploying Telemedicine with Video Conferencing Technology from IOITDeploying Telemedicine with Video Conferencing Technology from IOIT--HCMHCM
Connected to KISTI, PRAGMA and VAST using Connected to KISTI, PRAGMA and VAST using GlobusGlobus ToolkitToolkit
PHÂN VIỆN CÔNG NGHỆ PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ THÔNG TIN TẠI TP. HỒ CHÍ
MINH (IOITMINH (IOIT--HCM)HCM) 1818
IOITIOIT--HCM HCM connected connected to to PragmaPragma
PHÂN VIỆN CÔNG NGHỆ PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ THÔNG TIN TẠI TP. HỒ CHÍ
MINH (IOITMINH (IOIT--HCM)HCM) 2020
Applications and Middleware Applications and Middleware in in PragmaPragma testbedtestbed
http://goc.pragmahttp://goc.pragma--grid.net/applications/default.htmlgrid.net/applications/default.html
�� Real science applications pair and drive middleware Real science applications pair and drive middleware developmentdevelopment
�� Achieve longAchieve long--run and scientific resultsrun and scientific results�� Open to applications of all scientific disciplinesOpen to applications of all scientific disciplines
�� Climate simulationClimate simulation�� Savannah/Nimrod (MU, Australia)Savannah/Nimrod (MU, Australia)�� MM5/MM5/MpichMpich--GxGx (CICESE, Mexico; KISTI, Korea)(CICESE, Mexico; KISTI, Korea)
�� QuantumQuantum--mechanics, quantummechanics, quantum--chemistry:chemistry:�� TDDFT, QMTDDFT, QM--MD, FMO/MD, FMO/NinfNinf--G (AIST, Japan)G (AIST, Japan)
�� GenomicsGenomics
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�� GenomicsGenomics�� iGAPiGAP//GfarmGfarm/CSF (UCSD, USA; AIST, Japan; JLU, /CSF (UCSD, USA; AIST, Japan; JLU,
China)China)�� HPM: genomics (IOITHPM: genomics (IOIT--HCM, Vietnam)HCM, Vietnam)�� mpiBlastmpiBlast/Mpich/Mpich--G2 (ASGC, Taiwan)G2 (ASGC, Taiwan)
�� Organic chemistryOrganic chemistry�� GamessGamess--APBS/Nimrod (APBS/Nimrod (UZurichUZurich, Switzerland), Switzerland)
�� Molecular simulationMolecular simulation�� Siesta/Nimrod (Siesta/Nimrod (UZurichUZurich, Switzerland; MU, , Switzerland; MU,
Australia)Australia)�� Amber/Amber/RshRsh ( USM, Malaysia)( USM, Malaysia)
�� Computer ScienceComputer Science�� Load Balancer (IOITLoad Balancer (IOIT--HCM, Vietnam)HCM, Vietnam)�� GriddLeSGriddLeS (MU, Australia)(MU, Australia)
2 applications from Vietnam2 applications from Vietnam
Connected to Connected to TWGridTWGrid using using GliteGlite MiddlewareMiddleware
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Resource Broker on new IOITResource Broker on new IOIT--HCM GridHCM Grid
ResourceResourceBrokerBroker
Information Information ServiceService
DataSets info
Author.
Job Subm
it Event
Input “sandbox”
Output “sandbox”
“User “User interface”interface”
LCG LCG FileCatalogueFileCatalogue(LFC)(LFC)
Slide From EGEE Resource BrokerSlide From EGEE Resource Broker2323
Logging &Logging &BookBook--keepingkeeping
StorageStorageElementElement
ComputingComputingElementElementJob Status
Author.&Authen.
Job Subm
it Event
Job Query
Publish
Blast job submission on new IOIT-HCM Grid System with Glite Middleware
JDL Files structure for job submission:[
Executable = "blastall";JobType = "Normal";Arguments = " -p blastp -d ecoli -i aa.129295";StdOutput = "std_blast.out";StdError = "std_blast.err";InputSandbox = {
"blastall","ecoli.phr", "ecoli.pin", "ecoli.pnd", "ecoli.pni", "ecoli.psd", "ecoli.psi", "ecoli.psq",
"aa.129295" };
OutputSandbox = {"std_blast.out","std_blast.err"
}]
Grid CA for Grid CA for VNGridVNGrid
VNGridVNGrid VOVO
Design Grid on VINAREN NetworkDesign Grid on VINAREN Network
Slide from VINAREN-TEIN2
�� Grid Domain: Grid Domain:
vngrid.orgvngrid.org
�� 5 main site on 5 main site on VINAREN:VINAREN:
1.1. ioitioit--hcm.vngrid.orghcm.vngrid.org
Internet
wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org
se.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.org
voms.grid.sinica.edu.tw
lfc.ioit-hcm.vngrid.org
1.1. ioitioit--hcm.vngrid.orghcm.vngrid.org
2.2. ioit.vngrid.orgioit.vngrid.org
3.3. hut.vngrid.orghut.vngrid.org
4.4. cnrs.vngrid.orgcnrs.vngrid.org
5.5. vnu.vngird.orgvnu.vngird.org
Internet
wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org
se.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.org
voms.grid.sinica.edu.tw
lfc.ioit-hcm.vngrid.org
Video conferencing on VINAREN-TEIN2 45 Mbps Connection from IOIT-HCM to VNU Ha Noi and IOIT Ha Noi
Services for Future Grid on VINARENServices for Future Grid on VINAREN
�� Deploy eDeploy e--Learning system for training Grid Learning system for training Grid TechnologyTechnology
�� Develop eDevelop e--Science application on Grid for Science application on Grid for �� Develop eDevelop e--Science application on Grid for Science application on Grid for collaboration as: collaboration as:
�� BioScienceBioScience, e, e--HealthHealth
�� Access Grid, Video conferencing Access Grid, Video conferencing
�� Meteorology, Virtual Reality, Meteorology, Virtual Reality, Cryptography, Cryptography, GeoGridGeoGrid……
�� EE--CultureCulture
Running services on IOITRunning services on IOIT--HCM GridHCM Grid
ElearningElearning system for Grid Training:system for Grid Training:
http://elearning.ioithttp://elearning.ioit--hcm.vngrid.orghcm.vngrid.org
BioInformaticsBioInformatics on Grid:on Grid:
http://biogrid.ioithttp://biogrid.ioit--hcm.vngrid.orghcm.vngrid.org
Video conferencing on Grid: Video conferencing on Grid:
http://vc.ioithttp://vc.ioit--hcm.vngrid.orghcm.vngrid.org
VN Digital Map on Grid (using VN Digital Map on Grid (using googlegoogle map):map):
http://gridmap.ioithttp://gridmap.ioit--hcm.vngrid.orghcm.vngrid.org
VNGridVNGrid Collaboration: now and futureCollaboration: now and future
�� Join to the Grid CommunityJoin to the Grid Community
�� Participation to Grid projectsParticipation to Grid projects
�� Participation to network project in Vietnam Participation to network project in Vietnam �� Participation to network project in Vietnam Participation to network project in Vietnam on VINAREN, TEIN2 and deploy on VINAREN, TEIN2 and deploy application for endapplication for end--useruser
Joined to the Grid CommunityJoined to the Grid Community
1.1. GeoGridGeoGrid, , PragmaPragma 12: 12: ThailandThailand (03/2007)(03/2007)
2.2. ISGC 07: ISGC 07: TaipeiTaipei (03/2007)(03/2007)
3.3. EGEE User Forum: EGEE User Forum: ManchesterManchester (05/2007)(05/2007)
4.4. AsiaGridAsiaGrid: : SingaporeSingapore (06/2007)(06/2007)4.4. AsiaGridAsiaGrid: : SingaporeSingapore (06/2007)(06/2007)
5.5. 2424thth APAN Meeting: APAN Meeting: ChinaChina (08/2007)(08/2007)
6.6. EGEE Meeting: EGEE Meeting: PudapestPudapest (10/2007)(10/2007)
7.7. Grid Camp & EUGrid Camp & EU--IndiaGirdIndiaGird Workshop: Workshop: TaipeiTaipei(11/2007)(11/2007)
8.8. Do Son School: Do Son School: VietnamVietnam (11/2007)(11/2007)
9.9. 2525thth APAN Meeting: APAN Meeting: HawaiiHawaii (01/2008)(01/2008)
Join to the Grid Communities activitiesJoin to the Grid Communities activities1. Fragma 12 – Thailand, Mar 2007 �� 3. EGEE User Forum, England , May 20073. EGEE User Forum, England , May 2007
2. ISGC 2007 – Taipei, Apr 2007�� 4. 4. AsiaGridAsiaGrid –– Singapore, Jun 2007Singapore, Jun 2007
5. 24th APAN Meeting- Xian, China, Aug 2007�� 6. EGEE Meeting: 6. EGEE Meeting: PudapestPudapest ,,OctOct 20072007
International IT Conference 10th ,Vietnam, Sep 2007
7. Grid Camp: 7. Grid Camp: TaipeiTaipei, Nov , Nov 20072007 8. Do Son Grid School,8. Do Son Grid School, Ha Ha NoiNoi, , VietnamVietnam, Nov , Nov 20072007
9. 9. 2525thth APAN Meeting, Hawaii, Jan 2008APAN Meeting, Hawaii, Jan 2008
Future Grid ConferencesFuture Grid Conferences
11stst IOITIOIT--HCM Grid Forum, HCM Grid Forum, Ho Chi Minh, Vietnam, Dec 2007Ho Chi Minh, Vietnam, Dec 2007
IOITIOIT--HCM Participation to HCM Participation to EUAsiaEUAsia, FP7 Project, FP7 Project
ConclusionConclusion
�� We are studying Grid Technology and try to We are studying Grid Technology and try to apply to Science and Education. apply to Science and Education.
�� Need to invest Need to invest more for the network and more for the network and infrastructure infrastructure
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infrastructure infrastructure
�� Need to connect to the other Grid Need to connect to the other Grid System for expand the collaboration.System for expand the collaboration.
�� Need more supporting to develop the Need more supporting to develop the Grid in VietnamGrid in Vietnam
�� Our Our next step is connecting to EGEE Asia Federation (EAF) to next step is connecting to EGEE Asia Federation (EAF) to receive the operations technology and experience for deploying receive the operations technology and experience for deploying ee--Science Science applications on applications on our Grid Resource Centers.our Grid Resource Centers.
IOITIOIT--HCM Grid on VINAREN Network & HCM Grid on VINAREN Network & Research for eResearch for e--Science ApplicationsScience Applications
Tran Van Lang, Do Van Long, Dao Van TuyetTran Van Lang, Do Van Long, Dao Van Tuyet
Member of Member of VNGridVNGrid Project.Project.
Ho Chi Minh City Institute of Information Technology (IOITHo Chi Minh City Institute of Information Technology (IOIT--HCM),HCM),
Vietnamese Academy of Science & Technology Vietnamese Academy of Science & Technology
The APAN 25th MeetingThe APAN 25th MeetingJan 23Jan 23--25, 200825, 2008
University of Hawaii, Hawaii USA University of Hawaii, Hawaii USA