fish dna barcoding
TRANSCRIPT
Present status and future prospects of DNA barcoding in fish with special reference to India
Content Introduction COI Gene
DNA barcoding protocol
Review of past studies in
world
Indian scenario
Review of past studies in
India
Protocol conclusion
What is DNA barcoding? DNA barcoding is a taxnomic method that uses a short genetic
marker in an organism's DNA to identify it as belonging to a
particular species.
It differs from molecular phylogeny in that the main goal is not to
determine classification but to identify an unknown sample in terms
of a known classification.
DNA Barcoding is the genetic as well as taxonomic method which
analyses DNA sequence of a uniform target gene to enable species
identification.
example, if we write the barcode sequence of an barramundi (Lates
calcarifer) it would look like this:
History of DNA barcoding:
Huge biodivercity 15700 marine and 13700 fresh waterspecies (Fish Base; WWW.Fish base org.).
DNA barcoding is a taxonomic method that uses a shortgenetic marker in an organisms.
DNA Barcoding is the genetic as well as taxonomicmethod which analyses DNA sequence of a uniform targetgene to enable species identification.
.
Introduction
Cont… Identifies not only whole fish but also fish eggs and
larvae, fish fragments, fish fillets and processed fish.
The cytochrome c oxidase subunit 1 mitochondrial
region (COI) is emerging as the standard barcode
region for higher animals.
Efficient method for species level identification and
as such, will contribute powerfully to taxonomic
and biodiversity research.
COI Gene
Why COI Gene?
DNA Barcoding Protocol
Review of past studies in world
India with its four of the 34 biodiversity global hotspots.
Accounts for 7.8% of the global finfish diversity (Database of
NBFGR).
Indian scenario
2,553 Indigenous fin fishes
1,563 Marine species
291 Exotic species
2,934 Species of crustaceans
765 Echinoderms
486 Sponges
844 Seaweed species
The present study provides the first major
barcode records for 115 commercially important
Indian marine fish species belonging to 37
families.
Result of present study
• This study has strongly authenticated the efficacyof COI in identifying the fish species withdesignated barcodes.
• DNA sequences within species need to be similarto one another than to sequences in differentspecies for making DNA barcoding approachsuccessful.
• These results suggest that COI barcoding can betaken up as pragmatic approach for resolvingunambiguous identification of the fish fauna ofIndian Ocean with applications in its managementand conservation.
ADVANTAGES OF DNA BARCODING
Offers alternative taxonomic identification tool for
situations in which morphology is inconclusive.
DNA barcoding can speed up identification of new
species
Potential capacity for high throughput and
processing large numbers of samples
Ten reasons for identifying species by DNA Barcodes1. Works with fragments
2. Works for all stages of life
3. Unmasks look-alikes
4. Reduces ambiguity
5. Makes expertise go further
6. Democratizes access
7. Opens the way for an electronic handheld field guide, the Life Barcode
8. Sprouts new leaves on the tree of life
9. Demonstrates value of collections
10.Speeds writing the encyclopedia of life
future prospects of DNA barcoding
• The State of Gujarat, having rich biodiversity, has exclusive strengths in marine resources.
• The longest coastline confers enviable richness in terms of species diversity with about 462 marine species of flora and 782 species of marine fauna, offer a vast potential base for research and development.
Thank you