sms 598: application of remote and in-situ ocean optical measurements to ocean biogeochemistry quick...
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SMS 598: Application of Remote and In-situ Ocean Optical Measurements to Ocean Biogeochemistry
Quick biology overview and
Phytoplankton – taxonomic classification, pigments, photo-adaptation
Mary Jane Perry5 July 2007
All you wanted to know about biology, but were afraid to ask
All you wanted to know about biology, but were afraid to ask
Three Super Kingdoms:Eukaryotes Eubacteria Archaea
single cells and metazoans
Prokaryotes:
single cells and consortia
Bottom line: great diversity of organisms that interact with light in the ocean
All you wanted to know about biology, but were afraid to ask
Four basic functions of all organisms:
Eat Avoid being eaten Defecate Reproduce
energy & materials * light * reduced inorganics * organic C
All you wanted to know about biology, but were afraid to ask
Four basic functions of all organisms:
Eat Avoid being eaten Defecate Reproduce
toxinsswimming bioluminescencemorphology (spines, chains)etc.
All you wanted to know about biology, but were afraid to ask
Four basic functions of all organisms:
Eat Avoid being eaten Defecate Reproduce
dissolved organics(e.g., glycolate at high light)
All you wanted to know about biology, but were afraid to ask
Four basic functions of all organisms:
Eat Avoid being eaten Defecate Reproduce
vegetative (asexual)sex – spore/cyst formation – diatom size – other?
All you wanted to know about biology, but were afraid to ask
Four basic functions of all organisms:
Eat Avoid being eaten Defecate Reproduce
energy & materials * light – “primary producers”
(phytoplankton; other photon users) * reduced inorganics – “primary producers” (chemosynthetic) * organic C – “consumers” (or secondary producers)
consume DOM or POM; mixotrophs
For the rest of this morning, will focus on “what’s a phytoplankton?”
Photosynthetic (pigmented)
Aerobic (oxygenated environment)
Oxygenic (oxygen producing; use sunlight)
Small, single-celled particle (usually)
Three points:1. Introduce you first to phytoplankton,
and a little bit about their role in the ocean2. What are the proxies based on interaction with light?
– particles scatter light– pigments absorb light– chlorophyll a and phycoerythrin fluoresce light
3. How physiology changes the relationship between phytoplankton and their optical proxies
Phytoplankton as particles– in the ocean, size matters <–> related to function
Size* efficiency of dissolved solute capture* motion – Brownian vs. intentional swimming* efficiency of encounter – surface area for contact* processing – if and how predator handles prey (match/not)* efficiency of aggregation* settling – Stokes Law (implications for carbon cycling)* carbon content* interaction with light – b: scattering (cross sectional area) – a: absorption (volume affects absorption efficiency)
Two food webs (with interconnections)
big
little
big particle vs. little particle energy/material cycling
“Phytoplankton” as species
What we call phytoplankton span the three Super Kingdoms: Archaea – rhodopsin (ATP); really phytoplankton? Eubacteria – cyanobacteria - oxygenic
aerobic, anoxygenic, bacterial chlorophyll anaerobic, anoxygenic (sulfur bacteria)
Eukaryotes – protists (very diverse) chlorophytes
Do species matter?
Some functions are species independent:photosynthesis and carbon fixationsize - sinking and nutrient uptake
Some functions are species specific:N2 fixation (Trichodesmium)toxins (domoic acid, PSP, etc.)dominate oceanic carbon flux (diatoms)
For optical identification, some pigments aretaxon specific
Synechococcus(~ 1 micron)
arrow denotes thylakoid membrane which has both photosynthetic and respiratory functions
Diagnostic: phycoerthyrin pigment fluoresces orange (in contrast to chlorophyll, which fluoresces red
Prochlococcus~ 0.7 microns
Diagnostic: very small size,lack of orange fluorescence,divinyl chlorophyll a & b
Trichodesmium (cyanobacterial nitrogen fixer; warm waters; patchy; Fe may regulate abundance)
Prasinophyte
Centric Diatoms, Thalassiosira and Chaetoceros
Pseudonitzschia (some species have toxin, domoic acid)
Alexandrium tamarense
CeratiumDinoflagellates
Coccolithophorid, with calcite plates or coccoliths;
look at the SeaWiFS website - blooms visible from space
Phaeocystis (colonical and single cell)famous for producing foam on northern European beaches
Chyrsophyte with silica scales
Pigments
definition: absorbing compound
role: light harvesting for photosynthesis (PS)light protection when too much light (PP)
types chlorophylls
chlorophyll a - primary PS pigment in all oxygen producers chlorophyll b or c - accessory PS pigments; expand range;transfer energy to chlorophyll a
(divinyl chl a and b) carotenoids
light harvesting for photosynthesis (PS) light protection when too much light (PP) phycobilins
water soluble pigments; phycoerythrin can fluorescence
QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.
http://www.nyu.edu/pages/mathmol/library/photo/
www.ch.ic.ac.uk/local/projects/ steer/cloroads.gif
Chlorophyll a(absorption peaks will vary,depending on environment –protein complex in membrane, polarity of solvent); in vivo fluorescence
QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.
porphyrinring w/Mg++
phytoltail
Degraded pigments: Pheophytin lost Mg++; peak shifts to ~415
Pheophorbidelost Mg++ and phytol tail
Accessory pigments:
Chl b and c
inside chl a max peaks minor modification of ring in vitro fluorescence
Chl c lacks phytol tail
Carotenoids
conjugated double bonds; role in photosynthesis (PS - absorb blue-green-yellow s) and photoprotection (PP - absorb excess photons, quenching free radicals, triplet oxygen); some taxon specificity
Phycobilins (phycobiliproteins) – water solublecyanobacteria and chryptomonads
PUB phycourobilin
PE (fluoresces orange)phycoerthyrin
PCphycocyanin
APCallophycocyanin