proteins. what are proteins? the most complex biological molecules contain c, h, o and n sometimes...
TRANSCRIPT
Proteins
What are Proteins?The most complex biological moleculesContain C, H, O and NSometimes contain SMay form complexes with other molecules containing P, Fe, Zn or Cu
Macromolecules with relative mol. Masses of 104 – 106
Consist of one or more unbranched polypeptide chains built up of amino acid monomers linked by peptide bonds
Each protein has a characteristic 3-D shape resulting from folding and coiling.
It is usual to describe protein structure by the level of organisation of the molecule:– Primary– Secondary– Tertiary– Quaternary Structure
Primary Structure
1’ Structure– The number, type and sequence of
amino acids – Specific to each protein– Coded for by DNA
Amino Acids
There is a central carbon atom (called the "alpha carbon"), with four different chemical groups attached to it:
– a hydrogen atom – a basic amino
group – an acidic
carboxyl group – a variable "R"
group (or side chain)
General formula:NH2.RCH.COOH
H
aa’s are cyrstalline solids and soluble in water20 common aa’s found in living organisms
The amino grp has basic propertiesThe carboxyl grp has acid propertiesAcid and basic properties called amphoteric
In organisms, pH usually neutral so both grps become ionised (+ve one end, -ve the other)– refered to as zwitterion
2 aa’s can join (condensation) to form dipeptideFurther reactions can occur making polypeptides
Most important role of aa’s is as monomers for protein synthesis
Green plants can synthesis all they need from photosynthesis and nitrate from soil
Animals can synthesise some, but need to obtain 8 from their diet. These are the essential amino acids
Amino acids are also involved in synthesis of other compounds like nucleic acids and cytochromes.
Secondary Structure
most basic level of protein folding– consists of a few basic motifs that are found in
all proteins.
The secondary structure is held together by hydrogen bonds between the carboxyl groups and the amino groups in the polypeptide backbone.
The two most common secondary structure motifs are the α-helix and the β-pleated sheet
The α-helix. The polypeptide chain is wound round to form a helix.
Held together by hydrogen bonds running parallel with the long helical axis.
Many hydrogen bonds make it very stable and strong.
The β-sheet. The polypeptide chain zig-zags back and forward forming a sheet of antiparallel strands.
Once again it is held together by hydrogen bonds.
Tertiary StructureMost proteins have α-helix regions and β-pleating
But folding of the polypeptide chain into a compact, globular shape is called the tertiary structure
The bending and folding is irregularCaused by formation of differing bonds between aa residues.
Bonding in R-groups
* Can only happen to end aa residues
Other ionic bonds may occur within R-groups
e.g. in insulin
Quaternary StructureComplex proteins may contain more than one polypeptide chain
If more than one chain it has a quaternary structure
The polypeptide chains may be all of the same type or different types
Further Classification of Proteins
Because of proteins abundance and diversity it is difficult to classify them in a simple manner.
It is customary to group them according to either their structure or function within living organisms.
Classifying according to structure
Fibrous Globular
Secondary Structure important; consist mainly of α-helix or β-pleated sheets
Tertiary structure important; bent and folded into spherical shapes
Insoluble in water Soluble in water
Structural Functionse.g. keratin, collagen
Enzymes, antibodies, hormonese.g. amylase, globulins, insulin
Haemoglobin“a conjugated protein”
Made of 4 chains
2 chains contain 141 aa-residues (α-globins)
2 chains contain 146 aa-residues (β-globins)
Total of 574
Other conjugated proteins
GlycoproteinsLipoproteins
Under some circumstances, the 3D shape of a globular protein can change– May be temporary or permanent
Doesn’t affect the primary structureAlteration of structure will affect the biological role of the protein especially in enzymes
Denaturation– Increase in heat, pH change, high salt conc.,
presence of heavy metals and organic solvents.
Chemical (Biuret) test for protein