i.1 intro to organic compounds

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    William L Masterton

    Cecile N. Hurleyhttp://academic.cengage.com/chemistry/masterton

    Edward J. Neth University of Connecticut

    Organic Chemistry

    General, Organic, andBiochemistry, 8e

    Bettelheim, Brown, Campbell, & Farrell

    http://academic.cengage.com/chemistry/mastertonhttp://academic.cengage.com/chemistry/masterton
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    Organic Chemistry

    Organic chemistry: the study of the compounds of

    carbon.

    Organic compounds are made up of carbon and

    only a few other elements.

    chief among these are hydrogen, oxygen, andnitrogen

    also present are sulfur, phosphorus, and halogens

    (fluorine, chlorine, bromine, or iodine)

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    Organic Chemistry

    Why is organic chemistry a separate discipline within

    chemistry?

    Historical: scientists at one time believed that a vital

    force present in living organisms was necessary to

    produce an organic compound. The experiment of Whler in 1828 was the first in

    a series of experiments that led to the demise of

    the vital force theory.

    NH4 Cl AgNCO H2 N-C-NH2

    O

    AgCl+ heat +

    Ammoniumchloride

    Silvercyanate

    Urea Silverchloride

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    Organic Chemistry

    The sheer number of organic compounds

    Chemists have discovered or made over 10million organic compounds and an estimated

    100,000 new ones are discovered or made each

    year.

    By comparison, chemists have discovered or

    made an estimated 1.7 million inorganic

    compounds.

    Thus, approximately 85% of all known compoundsare organic.

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    Some organic chemicals

    DNA

    Essential oils

    MedicinesActive Pharmaceutical Ingredients

    Excipients

    Materials

    Fuels

    Pigments

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    Organic Chemistry

    The link to biochemistry

    Carbohydrates, lipids, proteins, enzymes, nucleicacids, hormones, vitamins, and almost all other

    chemicals in living systems are organic

    compounds.

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    Organic Chemistry

    Organic chemistry deals with compounds of carbon,

    of which there are millions

    Over 90% of all known compounds contain carbon

    Carbon atoms bond to each other to a greater

    extent than atoms of any other element Chains and rings may form

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    Common Elements in Organic Chemistry

    1. Organic compounds are molecular rather than ionic

    2. Each carbon atom ordinarily forms four covalent

    bonds

    3. Carbon atoms may bond to atoms of other elements,

    most often hydrogen, a halogen, oxygen, nitrogenand sulfur

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    Organic Chemistry

    a comparison of organic and inorganic compounds

    Organic Comp ound s Inorgan ic Compounds

    Bond ing is almost entirel y covalent

    May be gases, liquids, or so lids

    with low melting points (less

    than 360C)Most are insoluble in water

    Most are so luble in organ ic so lven ts

    such as d iethy l ether, to luene , anddichloromethane

    Aqu eous solutions do n otcondu ct el ectricity

    Almost all burn

    Reactions are usually slow

    M ost have i onic bonds

    M ost are solid s with high

    melting points

    M any are so luble i n water

    Almost all are i nsoluble in

    organic so lvents

    Aqueous solutions conductelectricity

    Very few burn

    Reactions are o ften very fast

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    Considerations in this Chapter

    Hydrocarbons

    Carbon and hydrogen only

    Organic compounds containing N or O

    Structural formulas

    Isomerism

    Organic Reaction

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    Saturated Hydrocarbons: Alkanes

    Formula: CnH2n+2

    Simple alkanes (n = 1, 2, 3)

    Carbons surrounded by four single bonds

    sp3 hybrid orbitals Bond angles approximately 109.5

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    n

    1

    2

    3

    4

    5

    6

    MolecularFormula

    CH4

    C2H6

    C3H8

    C4H10

    C5H12

    C6H14

    Structuralformula

    H

    C

    H

    CC

    H

    H

    H

    H

    H

    H

    H

    C

    H

    C

    H

    H

    H

    C

    H

    H

    H

    H

    C

    H

    CC

    H

    H

    C

    H

    H

    H

    H

    C

    H

    CC

    H

    H

    C

    H

    H

    H

    H

    C

    H

    CC

    H

    H

    C

    H

    H

    H

    H

    H

    H

    H

    H

    H

    H

    C

    H

    H

    H

    H

    H

    C

    H

    H

    C

    H

    H

    H

    Name

    methane

    ethane

    propane

    butane

    pentane

    hexane

    Condensedstructuralformula

    CH4

    CH3CH3

    CH3CH2CH3

    CH3CH2CH2CH3

    CH3CH2CH2CH2CH3

    CH3CH2CH2CH2CH2CH3

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    Further members of the series

    Heptane CH3CH2CH2CH2CH2CH2CH3

    Octane CH3CH2CH2CH2CH2CH2CH2CH3

    Nonane CH3CH2CH2CH2CH2CH2CH2CH2CH3

    Decane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH3

    Undecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3

    Dodecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3

    Etc., etc.

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    Table 22.1 Nomenclature of Alkanes

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    Structural Isomers of Butane

    Two different alkanes with the formula C4H10

    Molecular view of alkanes Figure 22.1

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    Figure 22.2 - Molecular Structures of Butane

    Isomers

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    Nomenclature

    IUPAC naming schema

    For straight chains, the name is based on a single

    word

    For branched chains, the name is derived from the

    longest straight chain, with additions for branchpoints

    Suffix is based on the longest chain

    Prefix is numbered for the carbon where the branch is

    located

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    IUPAC Names for Isomers of Pentane

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    Sources and Uses of Alkanes

    Natural gas

    80-90% methane

    Remainder is C2H6, C3H3, and C4H10

    Bottled gas

    Compressed such that the gas inside is liquefied

    Petroleum

    Crude oil is the source of other hydrocarbons

    Distillation separates the components Gasoline

    Diesel fuel

    Asphalt

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    Figure 22.3 Bottled Gas

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    Figure 22.4 Refining Petroleum

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    Gasoline

    Straight chain and branched isomers

    Branched isomers burn more smoothly

    Anti-knock compounds

    Tetraethyl lead (C2H5)4Pb Not used in the US in decades

    Ethyl alcohol (C2H5OH)

    Currently widely used in gasoline

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    Cycloalkanes

    Alkanes can form rings rather than straight chains

    These are called cycloalkanes

    Contain two fewer hydrogens than chain alkanes

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    Figure 22.5 - Molecular Structure of Cycloalkanes

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    Unsaturated Hydrocarbons: Alkenes and Alkynes

    Unsaturated compounds contain at least one

    multiple bond

    Alkenes contain double bond(s)

    Each double bond replaces a pair of hydrogens

    General formula is CnH2n Alkynes contain triple bond(s)

    Each triple bond replaces two pairs of hydrogens

    General formula is CnH2n-2

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    Structures of Alkenes and Alkynes

    Alkene

    Alkyne

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    Example 22.3

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    Alkenes

    The simplest alkene: ethene (common name, ethylene)

    A double bond consists of a sigma and a pi bond

    There is no rotation about the bond

    The ideal bond angles are 120 Ethene is produced commercially in vast quantity

    Used as a starting material for polyethylene

    Also a plant hormone that ripens fruit

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    Naming Alkenes

    Alkenes are named as alkanes, with two exceptions

    -ane is replaced byene

    Where necessary, the number used to designate

    the carbon of the double bond is made as small as

    possible

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    Example 22.4

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    Alkynes

    The name of an alkyne is derived from that of an

    alkane, with the suffix changed fromane toyne Acetylene, C2H2, is the most common alkyne

    (systematic name: ethyne)

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    Acetylene

    Acetylene is used as a welding gas

    C2H2 (g) + O2 (g) CO2 (g) + H2O (l) H = -1300 kJ

    Acetylene is thermodynamically unstable with

    respect to decomposition into its elements

    C2H2 (g)

    2C (g) + H2 (g) G = -209.2 kJ at 25 C Because of the instability, acetylene is stored in a cylinder

    packed with porous material as a solution in acetone

    A ti H d b d D i ti

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    Aromatic Hydrocarbons and Derivatives

    Aromatic hydrocarbons (also called arenes)

    Derived from benzene (C6H6)

    Highly unsaturated

    Differ in properties from alkenes

    Each carbon forms three sigma bonds, one to ahydrogen atom and two to carbon atoms

    The remaining electron pairs are spread over the

    molecule

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    Condensed Ring Structures

    Fusion of benzene rings results in polycyclic

    compounds

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    Functional Groups

    Many organic molecules contain functional groups

    Functional group: an atom or group of atoms within amolecule that shows a characteristic set of

    predictable physical and chemical properties.

    Nonmetal atom Small group of atoms

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    Functional Groups

    Functional groups are important because

    They undergo the same types of chemicalreactions no matter in which molecule they are

    found.

    To a large measure they determine the chemicaland physical properties of a molecule.

    They are the units by which we divide organic

    compounds into families.

    They provide the basis on which we derive names

    for organic compounds.

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    Table 22.2

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    Alcohols

    Alcohols, R-OH

    R is the alkyl group

    -OH is the functional group

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    Ethers

    Ethers have the general structure R-O-R

    The R groups may be the same or different

    CH3-O-CH3, dimethyl ether

    CH3-O-CH2CH3, methyl ethyl ether

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    Alcohols and Ethers

    Properties of alcohols and ethers

    Alcohols have higher boiling points than ethers ofcomparable molar mass

    The hydrogen bond strengthens the interaction of

    alcohol molecules

    Ethers cannot hydrogen bond

    Alcohols of low molar mass are generally water-

    soluble

    Again, the hydrogen bond accounts for the solubility

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    Table 22.3 Physical Properties

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    Commercial Alcohols and Ethers

    Methanol is prepared from synthesis gas

    ZnO, Cr2O3

    CO (g) + H2O (l) CH3OH250 atm, 350 C

    Ethanol is formed from fermentation of sugar

    Common name: grain alcohol

    CH3CH2OH

    C (C )

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    Commercial Alcohols and Ethers, (Contd)

    Alcohols with more than oneOH group

    Diethyl ether C3CH2OCH2CH3

    Ethers react with oxygen in air to form peroxides,

    which are potent explosives

    Ald h d d K

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    Aldehydes and Ketones

    The carbonyl group

    In a ketone, there are alkyl groups

    on either side of the carbonyl group

    In an aldehyde, there is a hydrogen

    on one side (at the end of the chain)

    Properties of aldehydes are different from those of

    ketones

    C Ald h d d K t

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    Common Aldehydes and Ketones

    Acetone

    Water soluble

    Common solvent

    Used in fingernail polish remover

    Formaldehyde Used in a water solution as formalin

    Preservative

    Carcinogenic

    A ti Ald h d

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    Aromatic Aldehydes

    Aromatic aldehydes are used as flavoring agents

    and as odorants

    E l 22 6

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    Example 22.6

    C b li A id d E t

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    Carboxylic Acids and Esters

    Carboxylic acid

    Common carboxylic acids

    A idit f C b li A id

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    Acidity of Carboxylic Acids

    RCOOH (aq) H+ (aq) + RCOO- (aq)

    Strength varies from weak to strong

    Trichloroacetic acid has Ka = 0.20

    Strong acid

    Used to remove warts Treatment of carboxylic acids with alkali metal

    hydroxide (strong base) results in a sodium salt of

    the acid

    For long-chain acids, these are soaps

    E t

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    Esters

    Reaction between a carboxylic acid and an alcohol

    results in an ester

    The reaction between acetic acid and methyl alcoholis typical of these reactions

    Product is methyl acetate

    T bl 22 4 P ti f E t

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    Table 22.4 - Properties of Esters

    A i

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    Amines

    Amines have the structure R-NH2

    Primary amines have one alkyl group

    CH3NH2, methylamine, is the simplest amine

    Flammable gas

    Unpleasant, fishy odor Weak base (Kb = 4 X 10

    -4)

    Reacts with strong acid

    CH3NH2 (aq) + H+ (aq) CH3NH3

    + (aq)

    Other amines have foul odors

    Isomerism in Organic Compounds

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    Isomerism in Organic Compounds

    Isomers are distinctly different compounds, with the

    same molecular formula Have different chemical and physical properties

    Chain Structural Isomers

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    Chain Structural Isomers

    Consider the structural isomers of C5H12

    One is linear and the other two are branched

    Position Structural Isomers

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    Position Structural Isomers

    Consider the structure C4H8

    Look at the position or location of the double bond

    Structural Isomers with Functional Groups

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    Structural Isomers with Functional Groups

    Consider the structural isomers of C3H8O

    Two are alcohols; the third is an ether

    Example 22 9

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    Example 22.9

    Stereoisomers

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    Stereoisomers

    Types of stereoisomers

    Conformational, Geometric and Optical

    same

    connectivity

    Stereoisomers

    Chiral

    Enantiomers Dias tereomers

    Constitutional Isomers

    Cis-TransIsomers

    with

    stereocenters

    without

    stereocenters

    Achiral

    different

    connectivity

    Isomers

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    Geometric Isomers: cis trans

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    Geometric Isomers: cis-trans

    Geometric isomerism arises where alkenes are

    concerned There is no free rotation about the double bond

    Consider C4H8

    One pair of isomers is geometric cis when groups are on same side of double bond;

    trans when on opposite sides

    Example 22 10

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    Example 22.10

    Optical Isomers

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    Optical Isomers

    Optical isomers are possible when at least one

    carbon is bonded to four different atoms or groups Non-superimposable mirror images

    Consider your right and left hands

    They are mirror images They are not superimposable on each other

    Figure 22 11 Optical Isomers

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    Figure 22.11 Optical Isomers

    Terminology

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    Terminology

    A carbon with four different atoms or groups bonded

    to it is called chiral The two different forms are called enantiomers

    The carbon atom is the chiral center

    Molecules may contain more than one chiralcenter, and there are more than two enantiomers

    as a result

    Example 22 11

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    Example 22.11

    Two Stereocenters

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    Two Stereocenters

    For a molecule with n stereocenters, the maximum

    number of possible stereoisomers is 2n. We have already verified that, for a molecule with

    one stereocenter, 21 = 2 stereoisomers (one pair

    of enantiomers) are possible.

    For a molecule with two stereocenters, a

    maximum of 22 = 4 stereoisomers (two pair of

    enantiomers) are possible.

    For a molecule with three stereocenters, amaximum of 23 = 8 stereoisomers (four pairs of

    enantiomers) are possible.

    and so forth

    Interaction of Enantiomers with Light

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    Interaction of Enantiomers with Light

    When plane polarized light is passed through a

    sample of an enantiomer, the plane is rotated fromits original position

    Optical isomerism

    One isomer rotates right

    One isomer rotates left

    Figure 22 13

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    Figure 22.13

    Optical Activity

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    Optical Activity

    Dextrorotatory: clockwise rotation of the plane of

    plane-polarized light. Levorotatory: counterclockwise rotation of the

    plane of plane-polarized light.

    Specific rotation: the observed rotation of anoptically active substance at a concentration of 1

    g/mL in a sample tube 10 cm long.

    DD

    H3 CC

    OHH

    COOH

    CH3

    C

    HO

    H

    COOH

    [ ]

    21= -2.6= +2.6

    21

    [ ]

    (R)-(-)-Lactatic acid(S)-(+)-Lactic acid

    Optical Inactivity

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    Optical Inactivity

    If both isomers are present in equal amounts, the

    mixture is called racemic Offsets cancel and there is no net rotation

    Mesocompounds- when there is internal mirrorimage, optical rotation will cancel out

    Organic Reactions

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    Organic Reactions

    Organic reactions

    Usually between molecules, not ions Solvents are often nonpolar

    Four general types

    Addition Elimination

    Condensation

    Substitution

    Polymers

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    Polymers

    Polymers are large molecules

    Made up of smaller units called monomers Chain of monomers can be thousands of units

    long

    Synthetic organic polymers Joined by addition orcondensation

    Make up tires, cups, plates, fabrics

    Natural polymers Cellulose, a polymeric carbohydrate

    Proteins

    Table 23.1 - Synthetic Addition Polymers

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    Table 23.1 Synthetic Addition Polymers