Help Desk Update

March 2011 GMOD Meeting 5-6 March 2011

Dave ClementsGalaxy ProjectEmory Universityclements@galaxyproject.org

Inputs and Outputs

• Lunch will be here– I think in this room.

• Dinner– Mt Fuji, Brightleaf Square, 7:30pm tonight.– Unofficial– Headcount

• Coffee/Tea

• Bathrooms

• Twitter: #gmod11

Software Membership Requirements

• Codified in Feb 2010, following Jan 2010 meeting • Revisions discussed and adopted Fall 2010• Version 2 Requirements:

– Meets a common need– Useful over time– Configurable and Extensible– Open source license for all users– Interoperable with existing GMOD components– Commitment of support– Support mailing list that is publicly archived– Publicly accessible code repository

http://gmod.org/wiki/GMOD_Membership

GMOD.org and GMOD on the Web

• New and improved GMOD News as part of move to OICR

• GMOD Project Statistics Page• GMOD Promotion Page• Unified email archive @ Nabble

GMOD Europe 2010 Report

• 4 events, 4 days, 60 people• GMOD Meeting – 19 Talks

– Open Microscopy Environment,

InterMine, BioPivot, CpG Island

and STR Annotator Plugins,

GMOD RPC API, CRAWL, DAS, Cosmic GBrowse, Project Sustainability, …

• BioMart and InterMine workshops• Two Satellite Meetings

– Post Reference Genome Tools– Community Annotation

http://gmod.org/wiki/News/GMOD_Europe_2010_Report

GMOD Evo Hackathon Report

• 5 days, 31 people, 8 subroups

• GMatchbox

• GBrowse_syn2

• JBrowse_syn

• PhyloBox

• GMatchbox-JBrowse-PhyloBox Integration

• Natural Diversity and Phenotypes in Chado

• Galaxy + HyPhy

• BioPerl

Satellites

• Birds of a Feather / SIGs

• Monday, All day, @ NESCent

• Can still sign up

• Topics:– GMOD Evo Hackathon Folowup - Duke Leto– Customizing and Extending JBrowse - Mitch

Skinner– GMOD in the Sequencing Center - Chris

Hemmerich & Dave Clements– Your idea here …

http://gmod.org/wiki/Satellite_Meetings_-_GMOD_Americas_2011

Courses

• 2011: 5th school, 4rd year– Next week @ NESCent, North Carolina, US– 55 applications for 25 slots– InterMine and SOBA new this year.– Plus Apollo, Chado, Galaxy, GBrowse,

GBrowse_syn, GFF3, JBrowse, MAKER, and Tripal

– Tuition $265, < $55/day– Course sessions will become online tutorials

http://gmod.org/wiki/GMOD_Courses

Upcoming Events of Note

• Galaxy Community Conference– May, Lunteren, The Netherlands

• Arthropod Genomics Symposium– June, Kansas City, Missouri, US

• Workshop on Comparative Genomics– July, Fort Collins, Colorado, US

• Fall GMOD Meeting– October, Toronto, Canada

• Plant and Animal Genome– January, San Diego, California, US

• Biocuration 2012 / BioCreative / GMOD– April, Washington DC, United States

http://gmod.org/wiki/Calendar

(Help Desk) Grant Funded

• Enhancing the GMOD Suite of Genome Annotation and Visualization Tools– JBrowse, GBrowse JBrowse, Help Desk

• Help Desk– JBrowse, GBrowse JBrowse, NGS data, transcriptomics,

developmental atlases, population genomic and natural diversity data, workflow and pipeline tools for processing large data sets, and software interoperability

– Continue with documentation, user support, gmod.org, training, courses, outreach, annual survey

GMOD Help Desk: Now Hiring

http://gmod.org/wiki/News/GMOD_Helpdesk_Position_Open

Acknowledgements

Hilmar LappCandace Brown

Jon AumanDan BlankenbergDave Matthews

Steve HellerJohn AikmanRobert BuelsRichard Smith

Nicole WashingtonAlexie Papanicolaou

Josh GoodmanRandy Campbell

Suzi LewisMark YandellSue Brown

Matt BellgardDon Gilbert

…

Sheldon McKayLincoln Stein

Jim HuPeter Van Buren

Daniel RenfroTodd VisionNathan Liles

Maryann MartoneBill Gelbart

Brenley McIntoshChris Hemmerich

Cresko LabJames Taylor

LBCC Adv. DesignBen Faga

Joshua OrvisHeng Li

Simon McGowanJunjun Zhang

…

Scott CainCarson Holt

Brian OsborneEd Lee

Danielle WilsonStephen FicklinMitch SkinnerIan HolmesPhillips Lab

Gos MicklemShelley LawsonJason Swedlow

Barry MooreAlex Kalderimis

Eric StoneSteve Taylor

Richard BaldockBrian O’Connor

Denis Tagu…

Thanks

http://gmod.org/wiki/GMOD_Help_Desk

Dave ClementsGalaxy Project

Emory Universityclements@galaxyproject.org

For everything

Mailing List Archive(s): GMOD @ Nabble

Unified search - no matter where list is hosted

All active lists

SF.net search < good

http://gmod.org/wiki/GMOD_Mailing_Lists http://gmod.827538.n3.nabble.com/

Promotion

• Why?– Increased visibility

Increased adoption More projects contributing back– Increased adoption & development funding

• How?– Cite GMOD, GMOD Components– Powered by GMOD icons– Speakers at your event– Graphics & slides for your presentations, posters– Presentation and event promotion– Brochures (GMOD project, events)– Bling!

http://gmod.org/wiki/GMOD_Promotion

GMOD Logo Program

Logos by John Aikman's Spring 2010 Advanced Design class @ Linn-Benton Community College, Albany, Oregon, United States

http://gmod.org/wiki/Spring_2010_Logo_Program