neuroelectronic interfacing: semiconductor chips with ion ......semester 2011/2012 – meft ....

Nanoelectronics and Nanotechnology

NeuroScience

Neuroelectronic Interfacing: Semiconductor Chips with Ion Channels,

Nerve Cells and Brain

João Abrantes nº 65693

Teresa Jorge nº 65722

Tomás Cruz nº 65725

NeuroScience

State of the art

Electrodes stimulation Brain Imaging and PET Scan

2 Nanoelectronics and Nanotechnology – 1st

Semester 2011/2012 – MEFT

NeuroScience

State of the art

Zebrafish brain

Optogenetics



Nanoelectronics and Nanotechnology – 1st Semester 2011/2012 – MEFT

4

Neurons

NeuroScience

Neuron Anatomy

Synapse Nucleous Body cell Dendrite

Soma Axon

Axon Terminal



NeuroScience

Different Neurons



NeuroScience

Synapse

Transfer of information between neurons Axon terminal. Synaptic vesicles. Neurotransmitters-biochemical agents. Synaptic cleft Receptors Dendrits

Nanoelectronics and Nanotechnology –

1st Semester 2011/2012 – MEFT 7

NeuroScience

Ion concentration

Lipid membrane separating interior

from exterior medium. Different concentration of Na+ and K+

ions inside and outside of the cell. Higher concentration of K+ inside Higher concentration of Na+ outside



NeuroScience

Diffusion potential

Diffusion occurs in the direction of the concentration gradient.

K+ inside out Na+ outside in Membrane100x more permeable to K+

ions than to Na+ ions Voltage stops flow Rest voltage ~-90mv.



NeuroScience

K+ and Na+ Pumps

To make the ions pass through the membrane against the concentration gradient the neuron has K+ and Na+ Pumps. This transport requires energy to happen. And happens at different rates for K+ and Na+.



NeuroScience

Action potential Transfer of information through

the neuron Electrical signal Propagates near the cell membrane. Rest potential at -90mv

3 phases Rest Despolarization Repolarization How does it work?

11


NeuroScience

Depolarization Membrane gets permeable to Na+, it enters the cell and increases voltage. Repolarization Membrane closes Na+ channels and opens K+ channel. Na+ stops flowing in, K+ flows out. Voltage decreases. Trigger is voltage.

Action potential



NeuroScience

Action potential

Depolarization Membrane gets permeable to Na+, it enters the cell and increases voltage. Repolarization Membrane closes Na+ channels and opens K+ channel. Na+ stops flowing in, K+ flows out. Voltage decreases. Trigger is voltage.



NeuroScience

Action potential

Beginning of action potential When the voltage rises a little above -90mv the action potential begins. Feedback The rising of the voltages opens the Na+ channels. The opening of the channels allows the voltage to rise faster. It is a feedback process. For the feedback process to suffice, the voltage should in the first impulse rise above a certain voltage.

All or nothing Principle When there are conditions for the potential to propagate, it propagates. When there are not, it doesn't. There isn't half potentials.



NeuroScience

Action potential

Propagation of action potential The potential propagates to the neighbor membrane, in both directions.




16

Interface Model

NeuroScience

Micro/Nanoelectronic Devices Neurons

Hundreds of nanometers Micrometers

Electrical signals Electrical signals



NeuroScience

À priori possible problems:

•Charge carriers are different and their mobility is very different! Electrons in the electronic device and Ions in the neurons.

•Different architecture of the two information processors.

Conclusion: Direct communication between single neuron and nanoelectronic device should be no big deal!



NeuroScience

Model of interface, what do we know already:

•Neuron is surrounded by a lipid membrane that is a insulating material.

•Neuron membrane has proteins responsible for ionic currents trough the membrane.

•Standard nanoelectronics, insulating layer over a substratum.



NeuroScience

Most simple model, global contact.

Membrane and insulator layer forms a compact dielectric:

•Easy to polarize and be polarized by the neuron.

This model doesn’t work, reality is just not that simple!

(A variable voltage in the neuron directly polarizes the substratum and a variable voltage in the neuron)



NeuroScience

So, why does it not work?

Big proteins and irregularities in the membrane don’t allow global contact.

There is no compact dielectric.



NeuroScience

More realistic interface model: core coat conductor.

A conductive cleft is created between the membrane and the insulator layer.

The conductive cleft suppress mutual polarization and shield electric fields.



NeuroScience

Interface

•The current that flows across the cleft origins a transductive potential between the membrane and the insulator layer.

•Polarization will occur but will be mediated by the transductive potential.

The current that flows in the cleft will be the base of the interface will have its origin in:

•Conductive current from the ion channels.

•Displacement current through the membrane.

•Displacement current through the insulator layer.



NeuroScience

Next simplest model: Point contact model.

Balance equation 1:

Kirchhoff current law:



NeuroScience

Balance Equation 2:

Kirchhoff current law:



NeuroScience

Neuron-Silicon Circuits

Capacitive Stimulation Transistor Recording

Neuronal Activity




27

Recording

NeuroScience

Transistor Recording of Neuronal Activity

•What will be the read of transistor ?

Membrane potential VM(t)

Transductive Extracellular Potential VJ(t)

Inside Neuron

Cleft



NeuroScience


•Calculation of VJ(t), according to Point-Contact Model

Balance Equations

Small Signal Aproximation



NeuroScience


•Calculation of VJ(t), according to Point-Contact Model

Small Signal Aproximation (small VJ(t))

VE = 0

Current injected by a pipette

VJ(t) is determined by the capacitive and ionic current through the attached membrane.

VM(t) is governed by the currents through attached and free membrane.



NeuroScience


•A-, B- and C-type response

A-type response

B-type response

C-type response

1. The attached membrane contains no voltage-gated conductances (Voi=0);

2. Negligible leak conductance (gJM≈0).

gJVJ gJMVM cMdVM

dtVJ

dVM

dt

1. The attached membrane contains no voltage-gated conductances (Voi=0);

2. Dominating ohmic leak conductance.

gJVJ gJMVM cMdVM

dtVJ VM



NeuroScience


•Experiments of Neuronal Activity

Why neurons of invertebrates are preferred ?

• They are large and easy to handle; • They form strong neuroelectronic junctions; • Small networks may be reconstitued and studied on a chip.

Vs



NeuroScience


•Experiments of Neuronal Activity – Leech Neuron

Cell Body of a neuron on the open gate oxide of field-efect transistor.

Axon stump of a neuron on a linear array of

field-efect transistors.



NeuroScience

Transistor Recording of Neuronal Activity i. The cells are impaled with a micropipette and action potentials are elicited by current

injection;

ii. VM(t) is measured with the pipette;

iii. The response of transistors is calibrated in terms of VJ(t) on the gate.

Experimental records Three types of records:

A – With a cell body on a transistor, B – With a cell body on a transistor, C – With a axon stump on a transistor,

VJ (t) resembles dVM (t)

dt

VJ (t) resembles VM (t)

VJ (t) resembles dVM (t)

dt



NeuroScience


•Experiments of Neuronal Activity – Rat Neuron

Experimental conditions

i. Neurons from a rat hippocampus are cultures for seven days in neurobasal medium on a chip coated with polylysine;

ii. Selected cells are contacted with a patch pipette;

iii. Action Potentials are elicited by current pulses.



NeuroScience


•Experiments of Neuronal Activity – Rat Neuron

Experimental records

Injection current

Experimental Analysis

•VJ(t) ≈ 0,15 mV;

•VM(t) gives rise to two positive transients in VJ(t);

•The “jumps” in the record match the steps of injection current;

•The small amplitude of the transistor record is a consequence of a high conductance gJ wich is expected for the small size of rat neurons.

Potassium outward current Sodum inward current



NeuroScience


•Final considerations

i. Neuronal Activity is detected by field-effect transistors;

ii. The response is controled by VJ(t) in the cell-chip contact;

iii. There is no only one response to action potentials, because the shape of VJ(t) depends on the cell type and the cell area attached to the chip;

iv. The amplitude of recording signal is small, because the higher value of junction conductance gJ;

v. The signals are weak for mammalian neurons due to their small size;

vi. We may optimize recording by:

• Improving the cell-chip contact – reducing cleft width or improve specific resistence;

• Enhancing the inhomogenety of channel distribution (membrane); • Lowering the noise of transistors (improved design and fabrication).




38

Stimulation

NeuroScience

Next step in communication:

Electronic Device Neuron

According to the core coat condurtor model:

•A changing Vs leads to a displacement current through the insulator layer.

•Current in the cleft appears and gives rise to a VJ.

•Voltage gated ions channels may open and a action potential may arise.



NeuroScience

3 different types of response 3 different types of stimulation

Type A stimulation: ion conductance neglectable.

In this approximation, balance equation 2 leads to:

And balance equation 1:

Solving this to a step stimulation the result will be:

with

Response time of ion gated cells should be bigger. Nothing happen??



NeuroScience

Type B stimulation: ion conductance is important, VJ >> VM

With this approximation, balance equation 1 leads to:

That can be solved for a step stimulation:

with

After some hard and boring calculations that can be obtained:

Now the voltage gated ion channels will see a potential:



NeuroScience

If this VM is over some certain value of threshold a action potential may arise.

Experiment with leech neurons, stimulated by step potential of different magnitudes:

•The action potential as a ms time scale

•An action potential arises when VM reaches the threshold value.

•Depending on VS0, the action potential is achieved faster or slower.



NeuroScience

In type C stimulations we don’t really kwon what is going on because there could be very different responses.

In this experiment can be seen all that we have said, we excite neuron with an applied VS, read VM with a micropipette and read VJ with a transistor. The

results are:



NeuroScience

•The immediate response to burst voltages applied are short capacitive transients.

•After third pulse, the threshold is achieved and an action potential arise.




45

Neuron Nets

NeuroScience

Neuronal Nets

•The functions of neuronal networks:

•The requirements of experiments on netwok dynamics:

i. Definition of the growth area of a set of neurons;

ii. Enhancement of synaptic strenght as a consequence of correlated presynaptic and postsynaptic activity.

iii. z

i. A noninvasive supervision of all neurons with respect to stimulation and recording to observe the performance of the net on a long time scale;

ii. A fabrication of neuronal maps with a defined topology of the synaptic connections. For this, we have to control neuronal outgrowth.



NeuroScience

Neuronal Nets

•How we control the neuronal outgrowth ?

Chemical guidance;

Topographical guidance;

Electrical guidance.



NeuroScience

Neuronal Nets

•Chemical Guidance

The motion of neuronal growth cones is guided by chemical guidance. Defined arborizations of leech neurons are achieved by chemical guidance with lanes of extracellular matrix protein wich are fabricated by UV photolithography.

Using linear chemical patterns, we are able to guide the outgrouwth of a pair of neurons. Their growth cones are forced to collide and to form a synaptic connection.

Experiment of a leech neuron

Experiment of snail neurons



NeuroScience

Neuronal Nets

•Chemical Guidance

Problems

1. The stabilitic of neuritic trees is limited, because neurites have tendency to shorten;

2. The substrate provides a restricted area of growth, but it doesn´t define a certain direction of neurites.z

Electronmicrograph of the leech neurites

The shape of a neuritic tree is lost and neuritic tree is not defined by

the pattern !



NeuroScience

Neuronal Nets

•Topographical guidance

The instability of grown neuritic trees in chemical guidance is overcome. There the grown neuritics are immobilized by microscopic grooves. The synaptic connections are checked by impaling with micropipettes.

Problem

Network of three snail neurons

A neuritic tree is not uniquely defined by the guiding pattern !

•Electrical guidance

In order to solve above problems, we may use electrical manipulation at certain positions and times to promote or inhibit the growth and induce or prevent synapse formation.



NeuroScience

Neuronal Nets

•Final considerations

The use of previous methods is still uncertain. An alternative strategy may undergo uncontrolled growth of neurons on a chip consisting of thousands of closed structures of communication.

In this sense, the neurons could be in contact at any time and rearrange a network that would be supervised in its structure and dynamics.




52

Brain Slices

NeuroScience

Brain Silicon Chips

Brain Slices (For neuron net study) Advantages Already grown neuronal nets. Few layers cell thick Conserve major neuronal connections. Disadvantages Dead tissue. Preference for planar networks due to planar nature of silicon chips. Connection with single neuron impossible. Stimulation and recording of populations of neurons

53


NeuroScience

Brain Silicon Chips Model

There are two models for the brain silicon chips.

The first we discuss is the Volume Conductor, where you consider the brain slice to have volume. This is not the most used model.

54 Nanoelectronics and Nanotechnology – 1st Semester 2011/2012 – MEFT

NeuroScience

Sheet-conductor model In this model we consider the brain tissue to be 2D.

Ohmic conductance “shutting effect of the bath”

Resistance “thin tissue”

Capacitance “substrate”

Neuronal current source

Stimulation current Due to changing voltage Vs in the substrate

Continuity/ Conservation relation of current



NeuroScience

We will analyze a series of stimulated and recorded signals across a rat hippocampus.

Transistor recording of brain slice

Gyrus dentatus

The stimulation occured in the DG area and the recording was performed in the CA1 area.

In two deiferent layers: Stratum radiatum (dendrites)

Stratum pyramidale (cell bodies)



NeuroScience

In the pic you can see: Field potentials in the stratum radiatum (top) and in stratum pyramidale (bottom) of the CA1 region. The arrows mark the stimulation artifact The dashed line stands for the measurement with a micropipette electrode. The transistor records with higher voltage resolution. In the dendrites the signal in negative, potential going in. In the cell body is positive, potential coming out.

Transistor recording of brain slice



NeuroScience

Model simplification for recording

1D approach to the hippocampus slice. No stimulation Neglecting the capacitive current .

The current profile considered and the one physiologically meaningful is one with constant density of inward current density in the dendrites and balanced constant outward current in the body cells.



NeuroScience

Model simplification validation

Profile of field potential across the CA1 area. Black Dots - Amplitude of voltage transient plotted versus the position of the transistor. (Experimental) The data are fitted with the Vfield computed using the sheet-conductor model with the presented modifications and with profile equal to the dashed line. The thin lines are for the potential in the stratum pyramidale and radiatrum. The bulk line is the sum of the other two.



NeuroScience

Capacitive Stimulation

We will analyze the stimulation for a specific potential. In this case it will be a circular potential. So we use cylindrical coordinates. And assume

Stationary stimulation implies and



NeuroScience

Capacitive Stimulation

In this case we don’t have any experimental data. We evaluate through the sheet-conductor model which would be the applied field to a slice in case of Being according the dashed line.

The amplitude of the stimuli expected in the neuron is much smaller than the one given to the cell. The bulk line is the sum of the two thin lines. We can make the stimuli more precise by summing a negative potential, with the specified geometry, to a positive one. But this further decreases the amplitude.




62

Bibliography

NeuroScience

• Fromherz, Peter. Neuroelectronic Interfacing: Semiconductor Chips with Ion Channels,

Nerve Cells, and Brain. Berlim, 2003.

•Arthur C. Guyton, MD, and Jonh E. Hall, PhD. Tratado de Fisiologia Médica, translation

of 11th edition

•Barbara Young, James S.Lowe, Alan Stevens, Jonh W. Heath. Histologia Funcional,

translation of 5th edition, Wheater.

NeuroScience

The End



neuroelectronic interfacing: semiconductor chips with ion ......semester 2011/2012 – meft ....

Documents