methods of chromosome analysis - ucoz · sex chromatin analysis x chromatin analysis = barr body...
TRANSCRIPT
-
08.02.2009
1
Methods of chromosome
analysis
He is 4 years old (looks like 2 y.o.)
Knows few words
Inadequate reaction
Abnormal face
Short hands
Heart abnormalities, kidney abnormalities
Plurimapformativesyndrome
What is his karyotype?
1. Collecting of nuclear cells (just leucocytes if b lood is used)
-
08.02.2009
2
2. Cell culturing – cells in different stages of cell cycle
Thermostat
37º C
72 hours
Blood cells
+ growth broth
Cells in different stages of cell cycle
Proliferation
After 72 hours
3. Preparation of chromosomes for analysis
Cells in different stages of cell cycle
Hypotonic solution
Cytostatic -colchicine
Mitosis arresting
Cell sedimentation
Chromosome dispersing
-
08.02.2009
3
Slide with fixed cells Slide with metaphase plates
Painting
4. Painting of chromosomes
5. Karyotype analysis
Printing of picture Cutting individual chromosomes
Preparation of karyotype
-
08.02.2009
4
47,XY,+21 –Down syndrom
Cytogenetic methods used for
karyotype analysis:
To identify numeric aberrations – analysis of
metaphase chromosomes uniformly painted.
To identify numeric or structural aberrations – analysis
of metaphase or prometaphase chromosomes using Q,
G, R banding.
For exact identification of chromosomes – analysis of
metaphase chromosomes using T or C banding.
Analysis of human karyotype
Metaphase chromosomes
Prometapfasechromosomes
Interphasechromosomes
Uniform painting
G,Q,R,C,T banding
G, R banding
X and Y sex chromatin analysis
Molecular citogenetical
methodsFISH, mFISH
SKYCGH
*** No of bands per haploid set: 300-400 m / 550 pm / 850p
-
08.02.2009
5
13
Type of banding Used dye
G Giemsa
Q Quinacrin
(fluorescent)
R (revers) Giemsa or fluorescent
C (centromere) Giemsa or fluorescent
T (telomere) Giemsa or fluorescent
Chromosome staining
Homogenous Banding
G Q R C T
Bands G+ = Q+ = R –
Bands G- = Q- = R +
Cum se colorează diferit acelaşi crs?
-
08.02.2009
6
Uniform staining
-
08.02.2009
7
C banding
Chromosomal banding
Chromosome
Band
Arm
Subband
4p22.2
5q13.4
9p21.3
Region
-
08.02.2009
8
46,XY,del(1)(p11-p34)
1p35
1p22
1q23
1q41
46,XY,del(1)(p11-p34)
46,Y,del(X)(q12.1-q24.3)
-
08.02.2009
9
25
Chromosome 4 Identification of X and 18 Identification of X, Y and 18
Identification of 18 of 21 Identification of 18 and 21
FISH in chromosomal
analysis
46,XX 47,XX,+21
47,XX,+2147,XX,+21
-
08.02.2009
10
SKY
mFISH
-
08.02.2009
11
Karyotype
46,XX
46,XY
46,XX,9qh+
46,XY,16qh-
46,XX,14s++
47,XX,+21
45,XY,-12
48,XXXY
45,X
69,XXX
69,XXY
46,XX,1q-
46,XY,16p+
46,X,r(X)
46,XY,del(5p)
46,XX,t(12,22)
Normal Normal
polymorphisms
Aneuploidy Polyploidy Chromosomal
abberations
Abnormal phenotype
inv
t
rob
Balanced structural aberrations
Fenotip patologic
Trisomy – 47,XXX; 47,XXY; 47,+21; 47,+13; 47,+18; 47,+8
Monosomy – 45,X
Aneuploidies
Abnormal phenotype
Chrs D and G – variations in ph or s:
Chrs 1,9,16,9,Y – variations in qh
Polymorphisms
Normal phenotype
46,XX
46,XY
Normal karyotype
Fenotip patologic
deldup
r
i
Unbalanced structural aberrations
??? Polymorphisms
• p and q – contain coding and non-coding regions
• p+ or p- - abnormality • q+ or q- - abnormality
• c longer or shorter – polymorphism• t longer or shorter – polymorphism
• h+ or h- - polymorphism• s+ or s- - polymorphism
-
08.02.2009
12
Sex chromatin analysis
X chromatin analysis = Barr body test – identification of non-active
X, in interphase nuclei of somatic cells
Y chromatin analysis = F body test – identification of 2/3 of qY
in interphase nuclei of somatic cells or sperms
Normal karyotype
Y chromosome - 344 genes:
• regulatory masculinisation genes
• pseudogenes
• !!! q arm contains constitutive heterochromatin
X chromosome - 1529 genes:
•Structural somatic genes
•Regulatory feminisation genes;
•Structural feminisation genes;
•Structural masculinisation genes
-
08.02.2009
13
!!! Important
• X chromosome – is mandatory for and :
• In 46,XX – only one X is active
• In 46,XY – are active both X and Y
• In 47,XXX - only one X is active
• In 47, XXY- are active only one X and one Y
• In 48, XXXY- are active only one X and one Y
• Y chromosome – is mandatory for
How to explain this?
Sexual dimorphism - balanced
• Primary sexual traits - different
• Secondary sexual traits - different
• Somatic traits - similar
45,X 47,XXY
-
08.02.2009
14
46,XX 46,XY
Active X -euchromatin
Active X -euchromatin
Y chromosome
p arm – active q arm - inactive
Inactive X -heterochromatin
F body
= 0,25 μm
Barr body
= 1μm
-
08.02.2009
15
Barr body – X sex chromatin
NrBarr = X - 1
Barr body test
XXX X XXXX XXXXX
Y YY
F body test
48,XXXY 45,X 50,XXXXYY 49,XXXXX
Barr body testX sexual chromatin:
- represents an inactive X, facultative heterochromatin, in somatic cells 46,XX;
- represents a Barr body 1 m in diameter;
-Barr body test is useful for identification of No of X chromosomes in somatic cells: No X = No Barr + 1.46,XX – 1 Barr body46,XY – 0 47,XXX – 247,XXY - 145,X – 048,XXXX – 3!!! M. Lyon (1961) - explanation of Barr bod y
-
08.02.2009
16
Mary Lyon hypothesis
After 16th day
!!! In 46,XX cells – after 16 th day of development only one X remains active
In 50% of cells – maternal X is active, in 50% - paternal X
46,XX
45,X active +X paternal inactive
45,X active + X maternal inactive
F body testY sexual chromatin:
- represents 2/3 of q arm of Y chromosome, its a constitutive heterochromatin in somatic cells or 50% of sperms (23,Y only);
- represents fluorescent F body 0,25 m in diameter;
- F body test is useful for prenatal identification of gender: No Y = No F bodies
46,XX – 046,XY – 1 47,XYY – 247,XXY - 148,XXYY – 246,X,i(Yp) – 046,X,i(Yq) – 1 (0,5 m)