inquiry 1 reports are due th 9/23 or m 9/27 get help: office hours online calendar

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Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

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Page 1: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Inquiry 1 reports are due Th 9/23 or M 9/27

Get Help:office hours online calendar

Page 2: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Stream Videos- http://fri.cns.utexas.edu/student-resources/stream-sort

Stream Sort:Open houses have begun... homework #2 will ask you to attend at least 2 open houses.Info sessions 9/30-10/6. Application due 10/10

Page 3: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Inquiry 1 Written Report:Title- Concisely describe your experiment.Author(s)- Include your lab time.Abstract- Summarize your work. Do not exceed 250 words.Introduction-Results-Discussion-Materials and Methods-References- include: author name(s), article title, journal or book title, volume and page number, and year of publication

Staple your signed/approved proposal to the back of your written report.

Page 4: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Oral Report, about 5 minutesPrint and bring to lab...a title page with a title for your presentation and your namean introduction page with your question and hypothesesfigures, tables, graphs (do not put too many per page, make it readable from the back of the room)Conclusions with your answer and/or other conclusions, problems, etc.

Page 5: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Building Blocks of Scientific Literature

peer review

What is peer review?

Page 6: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

What happens between collecting the data, writing the paper, and its publication?

Page 7: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Associate Editors

Bonnie Bartel Houston, TX, USAAlan Jones Chapel Hill, NC, USARichard Amasino Madison, WI, USAJulia Bailey-Serres Riverside, CA, USAC. Robin Buell East Lansing, MI, USASheila McCormick Berkeley, CA, USAThomas Mitchell-Olds Durham, NC, USAJohn Ohlrogge East Lansing, MI, USAKathryn A. VandenBosch St. Paul, MN, USASusanne von Caemmerer Canberra City, ACT, Australia

Research Area and SectionsSignal Transduction and Hormone Action

Cell BiologyDevelopment and Hormone Action

Environmental Stress and Adaptation to StressBioinformatics, Breakthrough Technologies, and Genome Analysis

Systems Biology, Molecular Biology, and Gene RegulationGenetics, Genomics, and Molecular Evolution

Biochemical Processes and Macromolecular StructuresPlants Interacting with Other Organisms

Bioenergetics and PhotosynthesisWhole Plant and Ecophysiology

PLANT PHYSIOLOGY September 2008 Volume 148 Number 1An international journal devoted to basic research into how plants function, ranging from the molecular to the cellular to the whole plant levels, and including the interactions of plants with their biotic and abiotic environments.

Editor-in-ChiefDonald R. OrtUSDA/ARS Urbana, IL, USA

Page 8: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Associate Editors

Bonnie Bartel Houston, TX, USAAlan Jones Chapel Hill, NC, USA

Research Area and Sections

Cell BiologyDevelopment and Hormone Action

PLANT PHYSIOLOGY September 2008 Volume 148 Number 1An international journal devoted to basic research into how plants function, ranging from the molecular to the cellular to the whole plant levels, and including the interactions of plants with their biotic and abiotic environments.

Editor-in-ChiefDonald R. OrtUSDA/ARS Urbana, IL, USA

Page 9: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Research Area and SectionsSignal Transduction and Hormone ActionCell BiologyDevelopment and Hormone ActionEnvironmental Stress and Adaptation to StressBioinformatics, Breakthrough Technologies, and Genome AnalysisSystems Biology, Molecular Biology, and Gene RegulationGenetics, Genomics, and Molecular EvolutionBiochemical Processes and Macromolecular StructuresPlants Interacting with Other OrganismsBioenergetics and PhotosynthesisWhole Plant and Ecophysiology

PLANT PHYSIOLOGY September 2008 Volume 148 Number 1An international journal devoted to basic research into how plants function, ranging from the molecular to the cellular to the whole plant levels, and including the interactions of plants with their biotic and abiotic environments.

Page 10: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

After each article is sent to the associate editor, it is then sent to two anonymous reviewers.

Page 11: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

After each article is sent to the associate editor, it is then sent to two anonymous reviewers.

These reviewers send comments back to the associate editor.

Page 12: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

After each article is sent to the associate editor, it is then sent to two anonymous reviewers.

These reviewers send comments back to the associate editor.

They give suggestions for improvement as well as an opinion about whether it should be published or not.

Page 13: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

The associate editor then has three choices:

Page 14: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

The associate editor then has three choices:

Accept paper as is. (rare)

Page 15: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

The associate editor then has three choices:

Accept paper as is. (rare)

Accept paper and ask for some changes.

Page 16: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

The associate editor then has three choices:

Accept paper as is. (rare)

Accept paper and ask for some changes.

Reject paper. (20-80% rejection rate in physical sciences*)

*Scholarly Consensus and Journal Rejection Rates. Lowell L. Hargens (Feb., 1988) American Sociological Review 53: 139-151andBang for Your Buck: Rejection Rates and Impact Factors in Ecological Journals. The Open Ecology Journal (2008) L.W. Aarssen, T. Tregenza, A.E. Budden, C.J. Lortie, J. Koricheva and R. Leimu 1: 14-19

Page 17: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Now what do the author(s) do:

Accept paper as is…

Celebrate

Page 18: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Now what do the author(s) do:

Accept paper and ask for some changes…

Work on changes. May be changes to text, experiments, or both.

Page 19: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Now what do the author(s) do:

Reject paper…

Submit to another journal or try to fix deficiencies and resubmit.

Page 20: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Who reviews papers?

Page 21: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Who reviews papers?

Volunteers.

Other researchers knowledgeable in the field.

Page 22: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Who reviews papers?

Volunteers.

Other researchers knowledgeable in the field.

This can lead to conflicts of interest.

Page 23: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Who reviews papers?

Volunteers.

Other researchers knowledgeable in the field.

Not every reviewer does a great job.

Page 24: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

What makes a “good” or “top ranked” journal?

Best Journal

Ever

Page 25: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

What makes a “good” or “top ranked” journal?

Where the most important papers are published?

Page 26: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

What makes a “good” or “top ranked” journal?

Where the most important papers are published?

Citations = Important

Page 27: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

CA: A Cancer Journal For Clinicians-------69.026New England J. Medicine ------- 52.589Annual Review of Immunology ------- 47.981Review of Modern Physics ------- 38.403Nature Reviews Molecular Cell Biology ------- 31.921Annual Review of Biochemistry ------- 31.19Cell ------- 29.887Physiological Reviews ------- 29.6Nature Reviews Cancer ------- 29.19Nature ------- 28.751Lancet ------- 28.638Nature Reviews Immunology ------- 28.3Nature Medicine ------- 26.382Science ------- 26.372Nature Immunology ------- 26.218Annual Review of Neuroscience ------- 26.077Nature Genetetics ------- 25.556Jama-J. of the American Medical Assoc. ------- 25.547

http://biomedicalsciencesblog.blogspot.com/2008/06/journal-impact-factor-2007-top-500.html

Top Impact Factors (2007)

Page 28: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

CA: A Cancer Journal For Clinicians-------69.026New England J. Medicine ------- 52.589Annual Review of Immunology ------- 47.981Review of Modern Physics ------- 38.403Nature Reviews Molecular Cell Biology ------- 31.921Annual Review of Biochemistry ------- 31.19Cell ------- 29.887Physiological Reviews ------- 29.6Nature Reviews Cancer ------- 29.19Nature ------- 28.751Lancet ------- 28.638Nature Reviews Immunology ------- 28.3Nature Medicine ------- 26.382Science ------- 26.372Nature Immunology ------- 26.218Annual Review of Neuroscience ------- 26.077Nature Genetetics ------- 25.556Jama-J. of the American Medical Assoc. ------- 25.547

http://biomedicalsciencesblog.blogspot.com/2008/06/journal-impact-factor-2007-top-500.html

Top Impact Factors (2007)

Page 29: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Bang for Your Buck: Rejection Rates and Impact Factors in Ecological Journals. The Open Ecology Journal (2008) L.W. Aarssen, T. Tregenza, A.E. Budden, C.J. Lortie, J. Koricheva, R. Leimu 1:14-19

Top journals are more selective.

Page 30: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Publishing in a journal with a high impact factor is “very important” for researchers.

Bang for Your Buck: Rejection Rates and Impact Factors in Ecological Journals. The Open Ecology Journal (2008) L.W. Aarssen, T. Tregenza, A.E. Budden, C.J. Lortie, J. Koricheva, R. Leimu 1:14-19

Page 31: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Building Blocks of Scientific Literature

peer review

What is peer review?

Page 32: Inquiry 1 reports are due Th 9/23 or M 9/27 Get Help: office hours online calendar

Inquiry 1 reports are due Th 9/23 or M 9/27

Get Help:office hours online calendar