herbal medicine knowledge base (hmkb) system
TRANSCRIPT
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Version: 1.0
Herbal Medicine Knowledge
Base (HMKB) System
Supiah Mustaffa Ros’aleza Zarina Ishak Lee Chee Kiam Michelle Lim Sien Niu Nor Ezam Selan (MIMOS Berhad) Mary Sintoh (SEDIA)
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Outline
• Problem Statement
• Knowledge Modeling and Engineering
• Collaborative Knowledge Management
• Value of the Proposition
• Future Works & Conclusion
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Problem Statement
Problem:
• deterioration of herbal medicine knowledge
• scattered and unstructured information data sources
Solution:
• compile the information into a standard, reusable format
and store it into a central repository that can be referred by
different stakeholders
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Objectives
HMKB is developed to : 1) document and preserve Malaysian herbal
medicine knowledge
2) provide collaborative platform for community of
practice
3) boost economic sector related to herbal medicine
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Outline
• Problem Statement
• Knowledge Modeling and Engineering
• Collaborative Knowledge Management
• Value of the Proposition
• Future Works & Conclusion
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http://www.sabahinfomed.com.my/TraditionalMedicine/
http://www.sabahinfomed.com.my/Process/ http://www.sabahinfomed.com.my/Herb/
http://www.sabahinfomed.com.my/Pharmacology/
High level architecture of Herbal
Medicine Knowledge Base (HMKB)
Pharmacology
Traditional
Medicine
ProcessHerb
hasProcesshasHerb
hasInputhas
Pharmacology
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Knowledge Modeling and Engineering
Describe the knowledge about herb include:
-scientific name, family name, origin, distribution location, suitability of
climate, rainfall requirement, soil type, propagation parts and
management information
Pharmacology
Traditional
Medicine
ProcessHerb
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Herb
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Jasminum sambac Soland. Ex Ait.
Arabian jasmine {@en}
Alkoloids
hasSynonymskos:prefLabel
hasChemical
Constituent
Oleaceae
hasFamilyName
India
isOriginatedFrom
China
hasDistributedPlace
Nyctanthes sambac L.
hasNatural
Occurance Forest
hasTemperature
HerbTemperature
has
AnnualRainfall
propagated
By
hasAltitude
Herb
Altitude
Seed
SandyLoamy
Soil
hasSoil
Type
Tropical
hasClimate
hasRequired
Fertilizer
hasDisease
Detail
hasPest
Detail
Nitrogen
JSS
Disease
JSSPest
50
Herb
Annual
Rainfall
hasMinimum
Quantity
hasMeasurement
Unit
40
hasQuantity
hasMeasurement
Unit
800
Meter
hasMinimum
Quantity
hasMeasurement
Unit
25
Celcius
Centimeter
hasMaximum
Quantity
40
hasMaximum
Quantity
LeafSpot
hasDisease
hasDisease
Control Captan
Spray
Apply
Diazinon
Thrips
hasPest
hasPest
Control
<http://www.efloras.org/florataxon.aspx?flora_id=110&ta
xon_id=200017788>
hasImage
Jasminum
Image
hasImageLink
hasFileFormat JPEG
Instance
Datatype property
Annotation property
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Knowledge Modeling and Engineering
Consolidate important information about the prescription of certain
medicine to cure certain diseases
- required quantity of herbs, the disease cured, detailed prescription and
prescription method
Pharmacology
Traditional
Medicine
ProcessHerb
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Traditional Medicine
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Jasminum
sambacLAit
JSLAFor
Gallstone
usedToTreat
Gallstone
hasPlant
PartUsed
Young Leave
hasMedication
Prescription
JSLAForGallstonePrescription1
JasminumSambacHerbUsed1
hasHerb
hasMeasurementUnit
Gramme
10
hasQuantity
hasQuantity
150
hasMeasurement
Unit
Mililiter
hasFrequency
hasTreatmentMethod
Drink
3 times daily
hasDuration
JSLAForGallstoneDuration
hasProcess
JSLAForGallstoneProcess
has
Traditional
Medicine
hasQuantityhasMeasurement
Unit
3
Week
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Knowledge Modeling and Engineering
Explains the sequence of interdependent and linked procedures for
traditional medicine preparation
Pharmacology ProcessHerb
Traditional
Medicine
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Process
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JSLAForGallstoneProcess
expandTo
Boil
Water
10 gram of young leaves, 3 cups of water boiled to become 1 cup.
expandTo
Add
Water
herb:hasDescription
Add up to 450 ml hot water for infusion.
followBy
hasInitial
Process
hasInputJasminum sambac Soland. Ex Ait.
herb:hasDescription
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Knowledge Modeling and Engineering
Consist of pharmacology activity and pharmacology toxicity knowledge
Herb
Traditional
Medicine
ProcessPharmacology
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Pharmacology
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JSLA anti-
stress
chemical
JSLA
Phamacology
Stree
hasProduced
Chemical
hasMeasurement
Unit
Milligram per
kilogram
200
Benzyl acetate
hasPharmacology
protectAgainst
hasQuantity
hasConcentration
UnitIC50
useTestModel
In vitro
hasPharmacology
Activity
Anti-stress hasChemical
Extract
useExtract
JSLA anti-
stress
extract
Microgram
per milliliter200
hasQuantityhasMeasurementUnit
hasConcentration
Unit
Methanol
hasExtract
Type
IC50
extractFrom Stem
Jasminum sambac Soland. Ex Ait.
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Outline
• Problem Statement
• Knowledge Modeling and Engineering
• Collaborative Knowledge Management
• Value of the Proposition
• Future Works & Conclusion
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Collaborative Knowledge Management
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Collaborative Knowledge
Management
Navigation
Search
Authoring
Data Validation
Customized tree view
Semantic Data Access
Layer
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Collaborative Knowledge Management
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Collaborative Knowledge
Management
Navigation
Search
Authoring
Data Validation
Customized tree view
Semantic Data Access
Layer
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Navigation, Search, Authoring
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Search
Navigation
Authoring
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Data Validation
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Collaborative Knowledge Management
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Collaborative Knowledge
Management
Navigation
Search
Authoring
Data Validation
Customized class hierarchy view
Semantic Data Access Layer
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Collaborative Knowledge Management
• Customized tree view
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a b
Original tree (a) versus customized tree (b)
Pharmacology
Traditional medicine
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Collaborative Knowledge Management
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Collaborative Knowledge
Management
Navigation
Search
Authoring
Data Validation
Customized class hierarchy view
Semantic Data Access Layer
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Collaborative Knowledge Management
• Semantic Data Access Layer (DAL)
– Adopted SOA architecture
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Component
A
Component
B
1
2
3
45
6
10
9
11
7
8Delegator
Lookup
KBInterfaceClient
Authenticator
AllegroGraph
Server 3.2
Cache
KBInterface
MySQL
Server 5.0.84
Lucene
Index
Semantic Technology Platform KBInterface
Triple
Store
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Outline
• Problem Statement
• Knowledge Modeling and Engineering
• Collaborative Knowledge Management
• Value of the Proposition
• Future Works & Conclusion
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Value Proposition
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Scalability with SOA architecture
Knowledge enrichment capabilities
Simple approval workflow
Support diagnosis
decision process Drug discovery
Value Proposition
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Comparative Study
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Feature TROPICOS HerbMed HMKB
Free text search √ √ √
Text completion/ suggestion √ X √
Advance search √
Available only for the licensed version of the database. √
Wildcard support √ √ √
Content contribution X X
Subject matter experts are allowed to contribute content
User Guide – User Manual X √ √
Statistic √ X √
Navigation √ √ √
Access Free Subscription fee required Free
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Outline
• Motivation/Problem statement
• Knowledge Modeling and Engineering
• Collaborative Knowledge Management
• Value of the Proposition
• Future Works & Conclusion
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Future Works
1. Deployment stage
2. Impact study
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Future Works
Internal Pilot Test
• involves the internal users identified within SEDIA department
• involve 20 users
• focus on system familiarization, training and data migration and transition
Controlled deployment
• participation from selected government agencies and organizations
• includes engagement of selected subject matter experts
Full deployment
• Herbal Medicine web portal will be made available for public access to information on pharmacology, herbs and traditional medicine
• the community of practice will be able to contribute their knowledge and inputs in the related fields
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1. Deployment stage
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Future Works
2. Impact Study
Economy
• encourage the cash flow
• promote exploration and production activity
• offer job employment
Socio economy
• reduce time required in collecting and accessing herbal medicine knowledge
• increase awareness among users
• increase usage of herbal medicine among users
• promote commercialization of herbal medicine
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Economy Socio economy
Encourage the cash flow in herbal medicine industry
Reduce the time required by the practitioners in collecting and accessing herbal medicine knowledge since the system is available anytime, anywhere
Promote exploration and production activity related to herbal medicine in the country
Increase awareness among the users on the use of herbal medicine as compared to modern drug
Offer job employment in herbal medicine production or herbal plantation/ farming to meet the herbal medicine demand
Increase the usage of herbal medicine as alternative medicine among the user.
Promote the commercialization of herbal medicine to fulfill the user’s demand
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Conclusion
HMKB System:
• preserve the herbal medicine knowledge
• provide collaborative platform for
community of practice
• promote herbal medicine economic
demands
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QUESTION AND
ANSWER
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