biological databases [s2] e nrique b lanco number of slides: 5 expected time: 15 minutes
TRANSCRIPT
![Page 1: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/1.jpg)
Biological Databases [S2] ENRIQUE BLANCO
NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes
![Page 2: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/2.jpg)
Biological Databases [S2] - ENRIQUE BLANCO 2013 [email protected]
1. COMPUTER ANALYSIS
>sequenceTACGTACGTAGCTAGCTAGCTACGTAGCTAGCTAGCTACGTAGCTAATGTCGAAGTAACGTACGATCGTAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGATGCATGCGCTAAACACATCGCTTTGGCACGAGCTAGCTAGCTACTACAGCACGGGGGCACGTAGTGCAGCTAGCAGCCGCCGCATCGCCCCCCGATCGATCGTAGCCGACGATCTACTACGTAGCGACTGACTGATCGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGCTAGCTACGAGCAGCTAGCTAGCTACGAC
+ =
GENE1 FEATURE1 FEATURE2 … FEATUREm
GENE2 FEATURE1 FEATURE2 … FEATUREm
GENEn FEATURE1 FEATURE2 … FEATUREm
…
![Page 3: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/3.jpg)
Biological Databases [S2] - ENRIQUE BLANCO 2013 [email protected]
2. ONE DATA SET
GENE1 FEATURE1 FEATURE2 … FEATUREm
GENE2 FEATURE1 FEATURE2 … FEATUREm
GENEn FEATURE1 FEATURE2 … FEATUREm
…
SORT
REARRANGE
FEATUREm+1
FEATUREm+1
FEATUREm+1
ADD/CONVERT/EXTRACT
FILTER
![Page 4: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/4.jpg)
Biological Databases [S2] - ENRIQUE BLANCO 2013 [email protected]
3. TWO DATA SETS
GENE1FEATURE1 FEATURE2
GENE2FEATURE1 FEATURE2
GENEmFEATURE1 FEATURE2
…
GENE1
GENE2
GENEn
…
FEATURE1 FEATURE3
FEATURE1 FEATURE3
FEATURE1 FEATURE3
![Page 5: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/5.jpg)
Biological Databases [S2] - ENRIQUE BLANCO 2013 [email protected]
4. PIPELINES/WORKFLOWS
>chromosome1TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTAGCTACGTAGCTAATGTCGAAGTAACGTACGATCGTAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGATGCATGCGCTAAACACATCGCTTTGGCACGAGCTAGCTAGCTACTACAGCACGGGGGCACGTAGTGCAGCTAGCAGCCGCCGCATCGCCCCCCGATCGATCGTAGCCGACGATCTACTACGTAGCGACTGACTGATCGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGCTAGCTACGAGCAGCTAGCTAGCTACGAC
>chromosome22TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTAGCTACGTAGCTAATGTCGAAGTAACGTACGATCGTAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGATGCATGCGCTAAACACATCGCTTTGGCACGAGCTAGCTAGCTACTACAGCACGGGGGCACGTAGTGCAGCTAGCAGCCGCCGCATCGCCCCCCGATCGATCGTAGCCGACGATCTACTACGTAGCGACTGACTGATCGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGCTAGCTACGAGCAGCTAGCTAGCTACGAC
…
>sequenceTACGTACGTAGCTAGCTAGCTACGTAGCTAGCTAGCTACGTAGCTAATGTCGAAGTAACGTACGATCGTAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGATGCATGCGCTAAACACATCGCTTTGGCACGAGCTAGCTAGCTACTACAGCACGGGGGCACGTAGTGCAGCTAGCAGCCGCCGCATCGCCCCCCGATCGATCGTAGCCGACGATCTACTACGTAGCGACTGACTGATCGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGCTAGCTACGAGCAGCTAGCTAGCTACGAC
+
![Page 6: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/6.jpg)
Biological Databases [S2] - ENRIQUE BLANCO 2013 [email protected]
5. GALAXYhttps://main.g2.bx.psu.edu/
![Page 7: Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes](https://reader042.vdocuments.site/reader042/viewer/2022032200/56649cd95503460f949a2116/html5/page/7.jpg)
Biological Databases [S2] ENRIQUE BLANCO
NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes