background gregory fischer julie anderson daniel herman department of biology university of...

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Background Background Gregory Fischer Julie Anderson Daniel Herman Department of Biology University of Wisconsin-Eau Claire Heterologous expression of MBP1 from C. albicans in S. cerevisiae: A nontraditional approach MBP1 MBP1 Toxicity in Bacteria Toxicity in Bacteria Restriction mapping to verify the integrity of the MBP1 insert confirmed the sequence was maintained before transformation into bacteria (Figure 5). Post-transformation digests of extracted plasmid found that sequence fidelity was lost. Enzymatic digest of transformant plasmid was unsuccessful due to loss of restriction sites in and around the insert site (Figure 6). MBP1 was digested into two fragments (1.6 kb and 900 bp), ligated into the pESC vectors, and transformed into bacteria. Results confirmed DNA integrity was maintained (Figure 7). Therefore, full-length MBP1 seems to be toxic to bacteria . This faculty/student research collaboration was made possible through Differential Tuition and a generous grant from the Office of Research and Sponsored Programs. Detecting MBP1 Construct via PCR Detecting MBP1 Construct via PCR Future Work Future Work Direction of DNA Synthesis 3’ 5’ PGAL10 MCS1 GAL10R Primer 5’ 5’ 3’ PGAL1 MCS2 5’ GAL1R Primer 5’ 3’ PGAL1 MCS2 3’ 5’ MCS1 PGAL10 MBP1 Insert (2.5 kb) 1. Denaturation of Template 2. Primer Annealing 3. DNA Synthesis By preferentially amplifying a specific region of the vector, the PCR product will confirm if the plasmid was extracted and whether the MBP1 insert is present. 1,000 bp region Leu Ura MBP1 Present: 3.5 kb PCR product No Insert: 1.0 kb PCR product Figure 8: Gel Electrophoresis of Control Vector Samples of pESC-LEU and pESC-URA. Amplification of control samples of both LEU and URA vectors revealed successful amplification of the desired region. However, a PCR test of one sample (10L) did not produce any product. This could be due to insufficient template addition, inadequate DNA extraction from yeast cells, or contamination within the template. Further investigation needs to be carried out in order to use PCR to analyze sample extracts. 10L PCR confirmation of pESC-LEU/URA-MBP1 construct. Introduction of MBP1 into S. cerevisiae mbp1 ∆ strain. A Western Blot procedure to verify the expression of MBP1 in S. cerevisiae. Observation of altered phenotypes due to the expression of MBP1, for example differences in the cell morphology and changes in the regulation of cell division. Development of a simple protocol using yeast to obtain vector constructs with genes known to be toxic to bacteria. pESC-URA & LEU Vector Amp R Leu/Ura ori Lane Enzymes MBP1 Digested With Expected Fragments Fragments Observed in Gel? Before Transformation (Fig 5) Fragments Observed in Gel? After Transformation (Fig 6) 1 Sal1/Xho1 2.5 kb Yes No 2 BamH1 1.6 kb, 4.8 kb Yes No 3 Xba1 5.1 kb, 800 bp, 500 bp Yes No 4 HindIII 2.5 kb, 3.9 kb Yes No 1 2 3 4 1 2 3 4 PCR Transform into bacteria Figure 5: Restriction Digests of MBP1 Fragments to Confirm Sequence integrity. From the gel, all expected DNA fragments were accounted for, confirming DNA sequence integrity. Figure 7: Restriction Digest Results of MBP1 Fragment Ligations. Sixty-six bacterial colonies had pESC-Leu and Ura vector extracted and digested after the ligation of gene fragments (MF and MR) into the vector and transformation into the bacteria. These results indicate that full- length MBP1 is toxic to bacteria, while fragments of MBP1 are not. MF MR MF MR MF MR MF MR Leu MF Leu MF Leu MR Leu MR Leu MR Leu MR Leu MR Ura MR Ura MF Ura MR Ura MF Ura MF Ura MF Ura MF Ura MF Morphogenesis of C. albicans Morphogenesis of C. albicans Figure 3: C. albicans Wild-type Virulence Assay. Varying concentrations of filamentous yeast with functional CPH1 and EFG1 were injected into mice for , 1x107; x, 1x106; +, 1x105; o, 1x104. Cases of hospital-acquired fungal infections, such as oropharyngeal candidiasis (OPC), continue to increase (Figure 1). Recent studies of ICU fungal infections consistently find C. albicans to be the predominant yeast species isolated (Figure 2) (Shoham, et al., 2009). Studies have identified CPH1 and EFG1 proteins as essential for morphogenesis of C. albicans. Understanding the role certain proteins play in morphogenesis may lead to new therapies (Hsiu- Jung, et al., 1997) (Figures 3 and 4). There is evidence that MBP1 plays a role in the filamentous growth of C. albicans and is similar in sequence to the S. cerevisiae MBP1 gene. We have found MBP1 to be toxic to bacteria, therefore traditional methods for obtaining the expression construct will not work. A new protocol is being used where S. cerevisiae is transformed directly with the vector construct and cultured on selective media. Vector is then isolated and PCR amplified to confirm presence of MBP1. Results of this work will contribute to our understanding of yeast morphogenesis and provide a protocol for studying genes that are toxic to bacteria. D istribution ofC olonizing and Infecting C andida Species in IC U Patients 46% 25% 15% 10% 4% 0% 10% 20% 30% 40% 50% C. albicans C . paraps ilos is C . glabrata C . tropic alis C. krusei C andida S pecies % ofFungalInfection C ases Figure 1:Illustration of Oropharyngeal Candidiasis Infection Fungal infections, such as OPC, have increased in recent years as a result of increasing cases of HIV/AIDS and antifungal resistant strains. Figure 2: Distribution of Isolated Yeast Species in ICU Fungal Infections. Recent studies have found that the predominant yeast species isolated in fungal infections to be C. albicans. Figure 4: C. albicans cph1/cph1, efg1/efg1 Mutant Virulence Assay. Varying concentrations of nonfilamentous C. albicans with nonfunctional CPH1 and EFG1 were injected into mice for , 1x10 7 ; x, 1x10 6 ; +, 1x10 5 ; o, 1x10 4 . Figure 6: Restriction Digests of Vector Constructs Containing MBP1 DNA from Figure 5. Notice how complete loss of restriction sites was observed, confirming the loss of sequence integrity in MBP1, suggesting it is toxic in bacteria. Table 1: Restriction Digests Setup of MBP1 Before and After Transformation into Bacteria. Shoham, et al., 2009 Hsiu-Jung, et al., 1997 Hsiu-Jung, et al., 1997 DNA inserts are ligated into the vectors at one of two multiple cloning sites (MCS1 or MCS2). Then, expression of the insert DNA is driven by the respective promoter (PGAL1 or PGAL10) upstream of the insert DNA. With the addition of galactose to drive gene expression, the insert protein product should be produced.

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Page 1: Background Gregory Fischer Julie Anderson Daniel Herman  Department of Biology  University of Wisconsin-Eau Claire Heterologous expression of MBP1 from

BackgroundBackground

Gregory Fischer Julie Anderson Daniel Herman Department of Biology University of Wisconsin-Eau ClaireGregory Fischer Julie Anderson Daniel Herman Department of Biology University of Wisconsin-Eau Claire

Heterologous expression of MBP1 from C. albicans in S. cerevisiae: A nontraditional approach

Heterologous expression of MBP1 from C. albicans in S. cerevisiae: A nontraditional approach

MBP1 MBP1 Toxicity in BacteriaToxicity in Bacteria Restriction mapping to verify the integrity of the MBP1 insert

confirmed the sequence was maintained before transformation into bacteria (Figure 5).

Post-transformation digests of extracted plasmid found that sequence fidelity was lost. Enzymatic digest of transformant plasmid was unsuccessful due to loss of restriction sites in and around the insert site (Figure 6).

MBP1 was digested into two fragments (1.6 kb and 900 bp), ligated into the pESC vectors, and transformed into bacteria. Results confirmed DNA integrity was maintained (Figure 7).

Therefore, full-length MBP1 seems to be toxic to bacteria.

This faculty/student research collaboration was made possible through Differential Tuition and a generous grant from the Office

of Research and Sponsored Programs.

Detecting MBP1 Construct via PCRDetecting MBP1 Construct via PCR

Future WorkFuture Work

Direction of DNA Synthesis

3’ 5’PGAL10

MCS1

GAL10R Primer5’

5’ 3’PGAL1

MCS2

5’

GAL1R Primer

5’ 3’PGAL1

MCS2

3’ 5’

MCS1

PGAL10

MBP1 Insert (2.5 kb)

1. Denaturation of Template2. Primer Annealing3. DNA Synthesis

By preferentially amplifying a specific region of the vector, the PCR product will confirm if the plasmid was extracted and whether the MBP1 insert is

present.

1,000 bp region

Leu Ura

•MBP1 Present: 3.5 kb PCR product

•No Insert: 1.0 kb PCR product

Figure 8: Gel Electrophoresis of Control Vector Samples of pESC-LEU and pESC-URA. Amplification of control samples of both LEU and URA vectors revealed successful amplification of the desired region. However, a PCR test of one sample (10L) did not produce any product. This could be due to insufficient template addition, inadequate DNA extraction from yeast cells, or contamination within the template. Further investigation needs to be carried out in order to use PCR to analyze sample extracts.

10L

PCR confirmation of pESC-LEU/URA-MBP1 construct. Introduction of MBP1 into S. cerevisiae mbp1 ∆ strain. A Western Blot procedure to verify the expression of MBP1 in S.

cerevisiae. Observation of altered phenotypes due to the expression of MBP1,

for example differences in the cell morphology and changes in the regulation of cell division.

Development of a simple protocol using yeast to obtain vector constructs with genes known to be toxic to bacteria.

pESC-URA & LEUVector

AmpR Leu/Uraori

Lane Enzymes MBP1

Digested With

Expected Fragments

Fragments Observed in Gel?

Before Transformation (Fig 5)

Fragments Observed in Gel?

After Transformation (Fig 6)

1 Sal1/Xho1 2.5 kb Yes No

2 BamH1 1.6 kb, 4.8 kb Yes No

3 Xba1 5.1 kb, 800 bp, 500 bp

Yes No

4 HindIII 2.5 kb, 3.9 kb Yes No

1 2 3 4 1 2 3 4

PC

R

Transform intobacteria

Figure 5: Restriction Digests of MBP1 Fragments to Confirm Sequence integrity. From the gel, all expected DNA fragments were accounted for, confirming DNA sequence integrity.

Figure 7: Restriction Digest Results of MBP1 Fragment Ligations. Sixty-six bacterial colonies had pESC-Leu and Ura vector extracted and digested after the ligation of gene fragments (MF and MR) into the vector and transformation into the bacteria. These results indicate that full-length MBP1 is toxic to bacteria, while fragments of MBP1 are not.

MF

MR

MF

MR

MF

MR

MF

MR

Leu MF

Leu MF

Leu MR

Leu

MR

Leu MR

Leu

MR

Leu

MR

Ura MR Ura MF

Ura MR

Ura

MF

Ura

MF

Ura

MF

Ura

MF

Ura

MF

Morphogenesis of C. albicansMorphogenesis of C. albicans

Figure 3: C. albicans Wild-type Virulence Assay.

Varying concentrations of filamentous yeast with functional CPH1 and EFG1 were injected into mice for ∆, 1x107; x, 1x106; +, 1x105; o, 1x104.

Cases of hospital-acquired fungal infections, such as oropharyngeal candidiasis (OPC), continue to increase (Figure 1).

Recent studies of ICU fungal infections consistently find C. albicans to be the predominant yeast species isolated (Figure 2) (Shoham, et al., 2009).

Studies have identified CPH1 and EFG1 proteins as essential for morphogenesis of C. albicans. Understanding the role certain proteins play in morphogenesis may lead to new therapies (Hsiu-Jung, et al., 1997) (Figures 3 and 4).

There is evidence that MBP1 plays a role in the filamentous growth of C. albicans and is similar in sequence to the S. cerevisiae MBP1 gene.

We have found MBP1 to be toxic to bacteria, therefore traditional methods for obtaining the expression construct will not work.

A new protocol is being used where S. cerevisiae is transformed directly with the vector construct and cultured on selective media. Vector is then isolated and PCR amplified to confirm presence of MBP1.

Results of this work will contribute to our understanding of yeast morphogenesis and provide a protocol for studying genes that are toxic to bacteria.

Distribution of Colonizing and Infecting Candida Species in ICU Patients

46%

25%

15%10%

4%

0%

10%

20%

30%

40%

50%

C. albicans C. parapsilosis C. glabrata C. tropicalis C. k rusei

Candida Species

% o

f F

un

gal

In

fect

ion

C

ases

Figure 1:Illustration of Oropharyngeal Candidiasis Infection

Fungal infections, such as OPC, have increased in recent years as a result of increasing cases of HIV/AIDS and antifungal resistant strains.

Figure 2: Distribution of Isolated Yeast Species in ICU Fungal Infections. Recent studies have found that the predominant yeast species isolated in fungal infections to be C. albicans.

Figure 4: C. albicans cph1/cph1, efg1/efg1 ∆ Mutant Virulence Assay.

Varying concentrations of nonfilamentous C. albicans with nonfunctional CPH1 and EFG1 were injected into mice for ∆, 1x107; x, 1x106; +, 1x105; o, 1x104.

Figure 6: Restriction Digests of Vector Constructs Containing MBP1 DNA from Figure 5. Notice how complete loss of restriction sites was observed, confirming the loss of sequence integrity in MBP1, suggesting it is toxic in bacteria.

Table 1: Restriction Digests Setup of MBP1 Before and After Transformation into Bacteria.

Shoham, et al., 2009

Hsiu-Jung, et al., 1997Hsiu-Jung, et al., 1997

DNA inserts are ligated into the vectors at one of two multiple cloning sites (MCS1 or MCS2). Then, expression of the insert DNA is driven by the

respective promoter (PGAL1 or PGAL10) upstream of the insert DNA. With the addition of galactose to drive gene expression, the insert protein product

should be produced.