australian pathology units and terminology

1

AUSTRALIAN PATHOLOGY UNITS

AND TERMINOLOGY

(APUTS)

Reporting Terminology and Codes

Microbiology

(v2.1)

ISBN: Pending

2

State Health Publication Number (SHPN): Pending

Online copyright

© RCPA 2014

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Apart from any use as permitted under the Copyright Act 1968 or as set out

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NSW 2010, Australia.

This material contains content from LOINC® (http://loinc.org). The LOINC table,

LOINC codes and LOINC panels and forms file are copyright © 1995-2012,

Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and

Codes (LOINC) Committee and available at no cost under the license

athttp://loinc.org/terms-of-use.

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by

permission of the International Health Terminology Standards Development

Organisation (IHTSDO®). All rights reserved. SNOMED CT was originally created

by The College of American Pathologists. IHTSDO®, SNOMED® and SNOMED CT®

are registered trademarks of the IHTSDO

First published: February, 2013, 1st Edition (version 1.0)

Terminology for Reporting Pathology: Microbiology

TRIM Document #: D156352

Document History:Version Reason for Change Author Date

1.0Initial Terminology for Microbiology: Organisms mapped to SNOMED CT, published by

the RCPA Pathology Units and Terminology Standardisation Project.

Michael Legg / Dr

Christiaan Swanepoel 12-Feb-13

Changed the name of this spreadsheet from "PUTS Microbiology Urine Microbiology

LOINC subset " to "APUTS Microbiology terminology reference set ".

Added Document Revision History worksheet.

The following are the updates to the 'Terminology for Urine MCS' worksheet:

Corrected "15 Flucytosine" should have been "5 Flucytosine" on the Terminology for

Urine MCS worksheet.

Updated 'Yeast' to now say 'Yeasts'.

Removed "RCPA Pathology Units and Terminology Standardisation Project -

Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1"

title from Urine MCS LOINC subset.

Removed columns that were used during reviewing the SNOMED codes.

Added Terminlogy for Salmonella worksheet, compiled by PITUS-14 WG5.

2.0 Donna Moore 06-Jun-14

Urine Microbiology ReportLOINC Component Property Timing System Scale Method

Specimen

Collection Method 19159-3 Urinalysis specimen collection method Prid Pt Urine Nom

Dipstick/Chemistry

Glucose 25428-4 Glucose ACnc Pt Urine Ord Test strip

Bilirubin 5770-3 Bilirubin ACnc Pt Urine Ord Test strip

Ketones 2514-8 Ketones ACnc Pt Urine Ord Test strip

Specific Gravity 5811-5 Specific gravity Rden Pt Urine Qn Test strip

pH 5803-2 pH LsCnc Pt Urine Qn Test strip

Protein 20454-5 Protein ACnc Pt Urine Ord Test strip

Urobilinogen 5818-0 Urobilinogen ACnc Pt Urine Ord Test strip

Nitrites 5802-4 Nitrite ACnc Pt Urine Ord Test strip

Haemoglobin 5794-3 Hemoglobin ACnc Pt Urine Ord Test strip

Leucocyte Esterase 5799-2 Leukocyte esterase ACnc Pt Urine Ord Test strip

Microscopy

Cells

White blood cell count 30405-5 Leukocytes NCnc Pt Urine Qn

Red blood cell count 30391-7 Erythrocytes NCnc Pt Urine Qn

Red blood cell morphology 53974-2 Erythrocyte morphology Imp Pt Urine sed Nar Microscopy.light

Epithelial cells 30383-4 Epithelial cells NCnc Pt Urine Qn

Microorganisms

Bacteria 50221-1 Bacteria ACnc Pt Urine Ord Automated

Parasites 33017-5 Parasites Naric Pt Urine sed Qn Microscopy.light.LPF

Yeasts 32356-8 Yeast ACnc Pt Urine sed Ord Microscopy.light

Fungi 20457-8 Fungi.filamentous ACnc Pt Urine sed Ord Microscopy.light

Casts

Casts present 24124-0 Casts ACnc Pt Urine sed Ord Microscopy.light

Casts number 9842-6 Casts Naric Pt Urine sed Qn Microscopy.light.LPF

Casts type 58436-7 Casts Type Pt Urine sed Nom Microscopy.light

Crystals

Crystals present 49755-2 Crystals ACnc Pt Urine sed Ord Microscopy.light

Crystals number 38459-4 Crystals Naric Pt Urine sed Qn Microscopy.light.HPF

Crystals type 5782-8 Crystals Prid Pt Urine sed Nom Microscopy.light

Other 58442-5 Prid Pt Urine sed Nom Microscopy.light

Spermatozoa 8248-7 Spermatozoa ACnc Pt Urine sed Ord Microscopy.light

Antibacterial activity

Antibacterial activity 30910-4 Antimicrobials ACnc Pt Urine Ord

Culture

The same LOINC should be used if multiple organisms are cultured. The HL7 Sub ID (OBX-4) field can be used to distiguish organisms from each other and group relevant colony counts and susceptiblity testing.

Culture result/Organism 630-4 Bacteria identified Prid Pt Urine Nom Culture

Colony count 19090-0 Colony count NCnc Pt Urine Qn

Page 2 of 7

Urine Microbiology ReportAntimicrobial Susceptibility

The LOINC terms listed below are an extract from a large selection of antimicrobial substances available.

All are methodless and have the scale property

of OrdQn. The OrdQn scale property allows

results to be reported as as resistant,

intermediate, susceptible or as the mm diameter

of the inhibition

zone/ MIC numeric value.

In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient strip)

Antibacterials

Amikacin 18860-7 Amikacin Susc Pt Isolate OrdQn

Amoxycillin 18861-5 Amoxicillin Susc Pt Isolate OrdQn

Ampicillin 18864-9 Ampicillin Susc Pt Isolate OrdQn

Augmentin 18862-3 Amoxicillin+Clavulanate Susc Pt Isolate OrdQn

Azithromycin 18866-4 Azithromycin Susc Pt Isolate OrdQn

Aztreonam 18868-0 Aztreonam Susc Pt Isolate OrdQn

Cefepime 18879-7 Cefepime Susc Pt Isolate OrdQn

Cefotaxime 18886-2 Cefotaxime Susc Pt Isolate OrdQn

Cefpirome 18889-6 Cefpirome Susc Pt Isolate OrdQn

Ceftazidime 18893-8 Ceftazidime Susc Pt Isolate OrdQn

Ceftriaxone 18895-3 Ceftriaxone Susc Pt Isolate OrdQn

Cephalexin 18897-9 Cephalexin Susc Pt Isolate OrdQn

Cephalothin 18900-1 Cephalothin Susc Pt Isolate OrdQn

Cephazolin 18878-9 Cefazolin Susc Pt Isolate OrdQn

Chloramphenicol 18903-5 Chloramphenicol Susc Pt Isolate OrdQn

Ciprofloxacin 18906-8 Ciprofloxacin Susc Pt Isolate OrdQn

Clarithromycin 18907-6 Clarithromycin Susc Pt Isolate OrdQn

Daptomycin 35789-7 Daptomycin Susc Pt Isolate OrdQn

Doripenem 60535-2 Doripenem Susc Pt Isolate OrdQn

Ertapenem 35802-8 Ertapenem Susc Pt Isolate OrdQn

Erythromycin 18919-1 Erythromycin Susc Pt Isolate OrdQn

Flucloxacillin/ 18923-3 Floxacillin Susc Pt Isolate OrdQn

Flucloxacillin/Dicloxacillin 18916-7 Dicloxacillin Susc Pt Isolate OrdQn

Fosfomycin 25596-8 Fosfomycin Susc Pt Isolate OrdQn

Fusidic acid 18927-4 Fusidate Susc Pt Isolate OrdQn

Gentamicin 18928-2 Gentamicin Susc Pt Isolate OrdQn

Gentamicin (high level) 18929-0 Gentamicin.high potency Susc Pt Isolate OrdQn

Linezolid 29258-1 Linezolid Susc Pt Isolate OrdQn

lmipenem 18932-4 Imipenem Susc Pt Isolate OrdQn

Meropenem 18943-1 Meropenem Susc Pt Isolate OrdQn

Methicillin 18945-6 Methicillin Susc Pt Isolate OrdQn

Metronidazole 18946-4 Metronidazole Susc Pt Isolate OrdQn

Page 3 of 7

Urine Microbiology ReportMoxifloxacin 31039-1 Moxifloxacin Susc Pt Isolate OrdQn

Mupirocin 20389-3 Mupirocin Susc Pt Isolate OrdQn

Nitrofurantoin 18955-5 Nitrofurantoin Susc Pt Isolate OrdQn

Norfloxacin 18956-3 Norfloxacin Susc Pt Isolate OrdQn

Penicillin 18964-7 Penicillin Susc Pt Isolate OrdQn

Piperacillin 18969-6 Piperacillin Susc Pt Isolate OrdQn

Polymyxin B (Colistin) 18972-0 Polymyxin B Susc Pt Isolate OrdQn

Quinupristin/Dalfopristin (Synercid) 23640-6 Quinupristin+Dalfopristin Susc Pt Isolate OrdQn

Rifampicin 18974-6 Rifampin Susc Pt Isolate OrdQn

Streptomycin (high level) 18983-7 Streptomycin.high potency Susc Pt Isolate OrdQn

Tazocin 18970-4 Piperacillin+Tazobactam Susc Pt Isolate OrdQn

Teicoplanin 18989-4 Teicoplanin Susc Pt Isolate OrdQn

Tetracycline 18993-6 Tetracycline Susc Pt Isolate OrdQn

Tigecycline 42357-4 Tigecycline Susc Pt Isolate OrdQn

Timentin 18995-1 Ticarcillin+Clavulanate Susc Pt Isolate OrdQn

Tobramycin 18996-9 Tobramycin Susc Pt Isolate OrdQn

Trimethoprim 18997-7 Trimethoprim Susc Pt Isolate OrdQn

Vancomycin 19000-9 Vancomycin Susc Pt Isolate OrdQn

Amphotericin B 18863-1 Amphotericin B Susc Pt Isolate OrdQn

5 Flucytosine 18855-7 5-Fluorocytosine Susc Pt Isolate OrdQn

Fluconazole 18924-1 Fluconazole Susc Pt Isolate OrdQn

Itraconazole 32603-3 Itraconazole Susc Pt Isolate OrdQn

ESBL 6984-9 Beta lactamase.extended spectrum Susc Pt Isolate OrdQn

Metallo Beta lactamase XXXXX-X

Other

54217-5 Public health notifiable condition Prid Pt XXX Nom

11323-3 General health Find Pt ^Patient Nom Reported

Page 4 of 7

Salmonella Infection ReportLOINC Component Property Timing System Scale Method Long Name

Request Information

Clinical information 55752-0 Clinical information Find Pt ^Patient Nar Clinical information

Specimen Information

Laboratory Accession number 57723-9 Unique bar code number ID Pt Current sample Nom Unique bar code number of Current sample

Culture

Identification

Name of pathogen Refer to PUTS Microbiology Subset of Organisms mapped to Snomed CT

Method of identification XXXXX-X

Subtyping

Salmonella sp serovar 65756-9 Salmonella sp serovar Type Pt Isolate Nom Salmonella sp serovar [Type] in Isolate

Salmonella sp phage type 73672-8 Salmonella sp phage type Type Pt Isolate Nom Salmonella sp phage type in Isolate

MLVA type XXXXX-X

MLST type Code to be progressed by International harmonisation effort

SNP type Code to be progressed by International harmonisation effort

Antibiotic Susceptibility

The LOINC terms listed below are an extract from a large selection of antimicrobial substances available.

Suggest to flag antibiotics as released or unreleased.

First line or released antibiotics susceptibility results must to be reported to the reference laboratory. The suppressed second line antibiotics susceptibility results are optional.

All are methodless and have the scale property of OrdQn. The OrdQn scale property allow results to be reported as as resistant, intermediate, susceptible or as the mm diameter of the inhibition zone/ MIC numeric value.

In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient strip)

Antibacterials

Amikacin 18860-7 Amikacin Susc Pt Isolate OrdQn

Amoxycillin 18861-5 Amoxicillin Susc Pt Isolate OrdQn

Ampicillin 18864-9 Ampicillin Susc Pt Isolate OrdQn

Augmentin 18862-3 Amoxicillin+Clavulanate Susc Pt Isolate OrdQn

Azithromycin 18866-4 Azithromycin Susc Pt Isolate OrdQn

Aztreonam 18868-0 Aztreonam Susc Pt Isolate OrdQn

Cefepime 18879-7 Cefepime Susc Pt Isolate OrdQn

Cefotaxime 18886-2 Cefotaxime Susc Pt Isolate OrdQn

Cefpirome 18889-6 Cefpirome Susc Pt Isolate OrdQn

Ceftazidime 18893-8 Ceftazidime Susc Pt Isolate OrdQn

Ceftriaxone 18895-3 Ceftriaxone Susc Pt Isolate OrdQn

Cephalexin 18897-9 Cephalexin Susc Pt Isolate OrdQn

Cephalothin 18900-1 Cephalothin Susc Pt Isolate OrdQn

Cephazolin 18878-9 Cefazolin Susc Pt Isolate OrdQn

Chloramphenicol 18903-5 Chloramphenicol Susc Pt Isolate OrdQn

Ciprofloxacin 18906-8 Ciprofloxacin Susc Pt Isolate OrdQn

Clarithromycin 18907-6 Clarithromycin Susc Pt Isolate OrdQn

Daptomycin 35789-7 Daptomycin Susc Pt Isolate OrdQn

Doripenem 60535-2 Doripenem Susc Pt Isolate OrdQn

Ertapenem 35802-8 Ertapenem Susc Pt Isolate OrdQn

Erythromycin 18919-1 Erythromycin Susc Pt Isolate OrdQn

Flucloxacillin/ 18923-3 Floxacillin Susc Pt Isolate OrdQn

Flucloxacillin/Dicloxacillin 18916-7 Dicloxacillin Susc Pt Isolate OrdQn

Fosfomycin 25596-8 Fosfomycin Susc Pt Isolate OrdQn

Fusidic acid 18927-4 Fusidate Susc Pt Isolate OrdQn

Gentamicin 18928-2 Gentamicin Susc Pt Isolate OrdQn

Gentamicin (high level) 18929-0 Gentamicin.high potency Susc Pt Isolate OrdQn

Linezolid 29258-1 Linezolid Susc Pt Isolate OrdQn

lmipenem 18932-4 Imipenem Susc Pt Isolate OrdQn

Meropenem 18943-1 Meropenem Susc Pt Isolate OrdQn

Methicillin 18945-6 Methicillin Susc Pt Isolate OrdQn

Metronidazole 18946-4 Metronidazole Susc Pt Isolate OrdQn

Moxifloxacin 31039-1 Moxifloxacin Susc Pt Isolate OrdQn

Mupirocin 20389-3 Mupirocin Susc Pt Isolate OrdQn

Nitrofurantoin 18955-5 Nitrofurantoin Susc Pt Isolate OrdQn

Norfloxacin 18956-3 Norfloxacin Susc Pt Isolate OrdQn

Penicillin 18964-7 Penicillin Susc Pt Isolate OrdQn

Piperacillin 18969-6 Piperacillin Susc Pt Isolate OrdQn

Polymyxin B (Colistin) 18972-0 Polymyxin B Susc Pt Isolate OrdQn

Quinupristin/Dalfopristin (Synercid) 23640-6 Quinupristin+Dalfopristin Susc Pt Isolate OrdQn

Rifampicin 18974-6 Rifampin Susc Pt Isolate OrdQn

Streptomycin (high level) 18983-7 Streptomycin.high potency Susc Pt Isolate OrdQn

Tazocin 18970-4 Piperacillin+Tazobactam Susc Pt Isolate OrdQn

Teicoplanin 18989-4 Teicoplanin Susc Pt Isolate OrdQn

Tetracycline 18993-6 Tetracycline Susc Pt Isolate OrdQn

Tigecycline 42357-4 Tigecycline Susc Pt Isolate OrdQn

Timentin 18995-1 Ticarcillin+Clavulanate Susc Pt Isolate OrdQn

Tobramycin 18996-9 Tobramycin Susc Pt Isolate OrdQn

Trimethoprim 18997-7 Trimethoprim Susc Pt Isolate OrdQn

Vancomycin 19000-9 Vancomycin Susc Pt Isolate OrdQn

Ancillary

Immunochemistry

Salmonella paratyphi AH Ab 21511-1 Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A H Ab [Titer] in Serum by Agglutination

Salmonella paratyphi AO Ab 33470-6 Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A O Ab [Titer] in Serum by Agglutination

Salmonella paratyphi BH Ab 21513-7 Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi B H Ab [Titer] in Serum by

AgglutinationSalmonella paratyphi B H Ab [Titer] in Serum by

AgglutinationSalmonella paratyphi BO Ab 27938-0 Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi B O Ab [Titer] in Serum by Agglutination

Salmonella typhi H Ab 34371-5 Salmonella typhi H Ab Titr Pt Ser Qn Aggl Salmonella typhi H Ab [Titer] in Serum by Agglutination

Salmonella typhi O Ab 34372-3 Salmonella typhi O Ab Titr Pt Ser Qn Aggl Salmonella typhi O Ab [Titer] in Serum by AgglutinationSalmonella

typhi O Ab [Titer] in Serum by Agglutination

Interpretative comment 8251-1 Service comment Imp Pt XXX Nom Service comment

Note: Multiple comment LOINC codes available in the range 8251-1 (Service comment)…..8263-6 (Service comment 20).

Molecular

Salmonella sp DNA 49612-5 Salmonella sp DNA ACnc Pt XXX Ord Probe.amp.tar Salmonella sp DNA [Presence] in Unspecified specimen by Probe

and target amplification method

Salmonella typhi DNA 70021-1 Salmonella typhi DNA Threshold Pt Bld Ord Probe.amp.tar Salmonella typhi DNA [Presence] in Blood by Probe and target

amplification method

Interpretative comment 8251-1 Service comment Imp Pt XXX Nom Service comment

Note: Multiple comment LOINC codes available in the range 8251-1 (Service comment)…..8263-6 (Service comment 20).

Comment

Comment 22638-1 Path report.comments Imp Pt Specimen Nar Pathology report comments Narrative

Report type

Preliminary 73703-1 Path report.preliminary diagnosis Imp Pt Specimen Nom Pathology report preliminary diagnosis [interpretation] in

Specimen

Final 34574-4 Path report.final diagnosis Imp Pt Specimen Nom Pathology report final diagnosis

Notifying Infection / Public Health departments

Testing laboratory

Name of laboratory 68994-3 Performing laboratory name ID Pt Facility Nom Performing laboratory name

Laboratory address 68989-3 Performing laboratory Addr Pt Facility Nom Performing laboratory [Address]

Laboratory telephone XXXXX-X

Type of report

Preliminary 73703-1 Path report.preliminary diagnosis Imp Pt Specimen Nom Pathology report preliminary diagnosis [interpretation] in

Specimen

Final 34574-4 Path report.final diagnosis Imp Pt Specimen Nom Pathology report final diagnosis

Public health notification 11323-3 General health Find Pt ^Patient Nom Reported General health - Reported

54217-5 Public health notifiable condition Prid Pt XXX Nom Public health notifiable condition

Urine MCS

SpecimenSpecimen Type

MacroTime

Chemistry

Glucose

BilirubinKetones

Specific GravitypH

ProteinUrobilinogen

NitritesHaemoglobin

Leucocyte Esterases

Microscopy

Cells

White blood cell count

Red blood cells

Epithelial cells

Microorganisms

Bacteria

Parasites

Yeasts

Casts

Crystals

Other elements

Antibacterial Activity

Culture 630-4LOINC

No growth

Mixed growth

No significant growth

Significant growth

Organism 1

Identification

BacteriaKlebsiella sp.

ESBL Klebsiella pneumoniae

Virus

Fungi

Colony Count19090-0LOINC

Range or number

Growth of >10^8 org/L

10^7 to 10^8 organism/L of mixedgrowth of 3 organisms

>10^8 organisms/L

SusceptibilityAntibiotics

e.g. Ampicillin 18864-9LOINC

Method

Released/suppressed

None

Organism 2

Organism 3

Organism 4

Comment

None

Consistent with UTIProbable contamination

Growth unlikely to be significantPlease submit a repeat specimen fortesting if clinically indicated

Catheter commentsSterile pyuria

Notification to infection controland public health departments

PUTS Urine Microbiology Information Model v1.mmap - 12/02/2013 - Mindjet

Patient with symptoms

of food poisoning

Laboratory Information

System 1 Jurisdictional Public

Health Registry

Pathologist 1

Clinical Information

System

Clinical encounter Public health registry Pathology testing and reporting

Clinician

Request Salmonella Identified

Yes No

Request for characterisation

Positive Report (Preliminary)

Negative Report (Final)

Laboratory Information

System 2

Public Health Notification 1

Public Health Notification 2

Salmonella clustered

Negative Report (Final)

Epidemiologist

Public Health Alert

Salmonella confirmed & characterised

Positive Report (Final)

National Public Health Registry

No

Yes

Yes

Primary pathology provider

Jurisdictional reference laboratory

Pathologist 2

Does it fulfil

CDNA case definition

?

Information and terminology for Salmonella reporting

Terminology standard

Minimum information required by Jurisdictional

Reference Laboratory from


Minimum information required for Public health

Notification 1 from



Notification 2 from


Requesting doctor

Name - Yes Yes Yes

Address of the practice - Yes Yes Yes

Telephone - Yes Yes Yes

Fax - Yes Yes Yes

Medicare provider number - Yes Yes Yes

Patient demographics

Name - Yes Yes Yes

Sex - Yes Yes Yes

Date of birth - Yes Yes Yes

Residential address (Including state and postcode)

- Yes

Yes Yes

Medical Record Number - If admitted If admitted If admitted






Notification 1 from



Notification 2 from


Clinical information

Main symptoms - If available If available If available

Immunosuppression - If available If available If available

Hospital admission - If available If available If available

Travel history - If available If available If available

Specimen attributes

Laboratory accession number - Yes Yes Yes

Type (e.g. stool, rectal swab, etc.) SNOMED-CT-AU Yes Yes Yes

Date of collection - Yes Yes Yes

Date of receipt - - - Yes







Notification 1 from



Notification 2 from


Results

Name of the pathogen SNOMED-CT-AU Genus level Genus level Species and subspecies

levels

Method of identification LOINC Yes Yes Yes

Subtyping information e.g. serovar, phage type, MLVA type, MLST type, SNP type etc.

LOINC

- - Yes

Antibiotic susceptibility results LOINC If available If available If available

Date of the result to a clinician - Yes Yes Yes

Testing laboratory

Name LOINC Yes Yes Yes

Contact details (address, telephone, fax, email, website)

LOINC Yes Yes Yes

Type of the report (e.g. preliminary, final, supplementary)

LOINC Yes Yes Yes

Date of notification to a registry - Yes Yes Yes


Salmonella reportingInformation Model

Ancillary findings (if requested)

Immunochemistry

Antibodies

Salmonella paratyphi AH Ab21511-1LOINC

Salmonella paratyphi AO Ab33470-6LOINC

Salmonella paratyphi BH Ab21513-7LOINC

Salmonella paratyphi BO Ab27938-0LOINC

Salmonella typhi H Ab34371-5LOINC

Salmonella typhi O Ab34372-3LOINC

Interpretive comment8251-1LOINC

Molecular

Salmonella sp DNA49612-5LOINC

Salmonella typhi DNA70021-1LOINC


Other Test result type

Result


Comment22638-1LOINC

Report typePreliminary

73703-1LOINC

Final

34574-4LOINC

Report from Primary Pathologyprovider to JurisdictionalReference laboratory

Testing laboratory information

Name of laboratory68994-3LOINC

Laboratory contact details

Address68989-3LOINC

TelephoneXXXXX-XLOINC

Fax

Email

Website

Type of the report

Preliminary73703-1LOINC

Final34574-4LOINC

Date of notification

Name of pathogenSpecify genus level

Antibiotic susceptibilitySpecify first line or released antibiotics susceptibility results

Suppressed second line antibiotics susceptibility results (optional)

Report from JurisdictionalReference laboratory toJurisdictional Public Healthregistry

Testing laboratory information

Name of laboratory68994-3LOINC

Laboratory contact details

Address68989-3LOINC

TelephoneXXXXX-XLOINC

Fax

Email

Website

Type of the report

Preliminary73703-1LOINC

Final34574-4LOINC

Date of notification

Name of pathogenSpecify species and subspecies level

Antibiotic susceptibilitySpecify first line or released antibiotics susceptibility results

Suppressed second line antibiotics susceptibility results (as required)

Culture

No growth

264868006 | No growth |SNOMED CT

Growth

Identification

Method of identificationXXXXX-XLOINC

Name of the pathogen

e.g. Salmonella species372342007 | Salmonella species |SNOMED CT

e.g. Salmonella Typhi5595000 | Salmonella Typhi |SNOMED CT

Note: For more SNOMED CT codes for Salmonella organisms referto Microbiology Organisms subset mapped to Snomed CT

Subtyping information

Salmonella sp serovar65756-9LOINC

Salmonella sp phage type73672-8LOINC

MLVA typeXXXXX-XLOINC

MLST type

SNP type

Antibiotic Susceptibility

None

Antibiotics [1...*]e.g. Ciprofloxacin18906-8

LOINC

Resistant30714006 | Resistant |SNOMED CT

Susceptible131196009 | Susceptible |SNOMED CT

For the complete list of antibiotics, refer to the Terminology for Salmonellatab of the PUTS Microbiology terminology reference set.

Specimen information

Laboratory Accession number

57723-9LOINC

Specimen type

Rectal258528007 | Rectal swab |SNOMED CT

Swab257261003 | Swab |SNOMED CT

Stool119339001 | Stool specimen |SNOMED CT

Date of collectionDate of receipt

Request information

Requesting doctor

Name

Address of the practice

Telephone

Fax

Provider number

Patient demographics

Name

Sex

Date of Birth

Residential address

Street number and street

Suburb

Postcode

State

Medical Record Numberif patient admitted

Clinical information55752-0LOINC

Main symptoms

Immunosuppression

Hospital admission

Travel history

Otherfree text

Notification by Primary Pathology provider

Notification by Jurisdictional Reference laboratory

National Public Health registry

Refer to Salmonella Case Definitionhttp://www.health.gov.au/internet/main/publishing.nsf/Content/cda-phlncd-salmonella.htm

Jurisdictional Public Health registry

APUTS Salmonella report information model v1.0.mmap - 16/05/2014 - Mindjet

Terminology for Reporting Pathology: Microbiology Serology and Molecular



1.0

Initial Terminology for Reporting Pathology for Microbiology Serology and

Molecular, published by the RCPA Pathology Units and Terminology

Standardisation Project.

Michael Legg / Dr Christiaan

Swanepoel 12-Feb-13


Changed filename from "PUTS Microbiology Serology Molecular pathology LOINC

and UNITS terminology reference se t" to "APUTS Microbiology Serology Molecular

Pathology terminology reference set ".

Updated Terminology for Reporting Path worksheet for the following:

Removed heading, and placed it on this worksheet.

Removed columns that were used during reviewing the Loinc codes.

Added Length column. This is the number of characters for the "Preferred

term" column.

Also added LOINC Long Name columns to the view.

Changed "PUTS Unit" to "Unit".

Corrected spelling mistakes in the preferred name column. Changed

'Toxoplasmosis' to 'Toxoplasma gondii'.

2.1 After public feedback and approval by PITUS steering committee the following

changes were made: Donna Moore 24-Oct-14

- changed from 'Epstein Barr virus virus capsid Ab IgM' to 'Epstein Barr virus

capsid Ab IgM'.

- changed 'Methicillin resistant Staphylococcus DNA' to 'Methicillin resistant

Staphylococcus aureus DNA'


- changed 'Influenza B Total' to 'Influenza B Total Ab'

- changed 'Influenza B Total Complement Fixation' to 'Influenza B Total

Complement Fixation Ab'

- changed 'Influenza B Total HAI' to 'Influenza B Total HAI Ab'

- changed 'Influenza B Total Methodless' to 'Influenza B Total Methodless Ab'

- changed 'Q fever Total' to 'Q fever Total Ab' (both lines for Q fever have been

changed)

- changed from 'Leptospira interrogans serovar Tarassovi Ab' to 'Leptospira

interrogans serovar Tarrasovi Ab'.

Preferred term Synonyms Usage guidance Length Specimen Unit LOINC Component Property Timing System Scale Method LongName

Alphavirus group 16 Any No Unit 51663-3 Alphavirus RNA ACnc Pt XXX Ord Probe.amp.tar Alphavirus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Bacillus anthracis DNA 22 Any No Unit 41623-0 Bacillus anthracis DNA ACnc Pt XXX Ord Probe.amp.tar Bacillus anthracis DNA [Presence] in Unspecified specimen by Probe and target amplification method

Bacterial 16S rRNA 18 Any No Unit 66885-5 Bacterial 16S rRNA sequencing Prid Pt XXX Nom Bacterial 16S rRNA sequencing [Identifier] in Unspecified specimen

Barmah Forest virus IgG Ab 26 Blood/Serum No Unit 31247-0 Barmah forest virus Ab.IgG ACnc Pt Ser Ord

Barmah Forest virus IgM Ab 26 Blood/Serum No Unit 31248-8 Barmah forest virus Ab.IgM ACnc Pt Ser Ord

Barmah Forest virus RNA 23 Any No Unit XXXXX-X Barmah forest virus DNA or RNA ACnc Pt XXX Ord Probe.amp.tar Barmah forest virus DNA or RNA [Presence] in Unspecified specimen by Probe and target amplification method

Barmah Forest virus total Ab 28 Blood/Serum titre XXXXX-X Barmah forest virus Ab Titr Pt Ser Qn

Bartonella henselae DNA 23 Any No Unit 33986-1 Bartonella henselae DNA ACnc Pt XXX Ord Probe.amp.tar Bartonella henselae DNA [Presence] in Unspecified specimen by Probe and target amplification method

Bartonella quintana DNA 23 Any No Unit 57910-2 Bartonella quintana DNA ACnc Pt XXX Ord Probe.amp.tar Bartonella quintana DNA [Presence] in Unspecified specimen by Probe and target amplification method

BK virus DNA For qualitative reporting 12 Any No Unit 47251-4 BK virus DNA ACnc Pt XXX Ord Probe.amp.tar BK virus DNA [Presence] in Unspecified specimen by Probe and target amplification method

BK virus DNA For quantitative reporting in international units/mL 12 Any IU/mL 42587-6 BK virus DNA ACnc Pt XXX Qn Probe.amp.tar BK virus DNA [Units/volume] (viral load) in Unspecified specimen by Probe and target amplification method

BK virus DNA For quantitative reporting in log copies/mL 12 Any log copies/mL 43201-3 BK virus DNA LnCnc Pt XXX Qn Probe.amp.tar BK virus DNA [Log #/volume] (viral load) in Unspecified specimen by Probe and target amplification method

BK virus DNA For quantitative reporting in copies/mL 12 Any copies/mL 48309-9 BK virus DNA NCnc Pt XXX Qn Probe.amp.tar BK virus DNA [#/volume] (viral load) in Unspecified specimen by Probe and target amplification method

Bordetella pertussis DNA 24 Any No Unit 23826-1 Bordetella pertussis DNA ACnc Pt XXX Ord Probe.amp.tar Bordetella pertussis DNA [Presence] in Unspecified specimen by Probe and target amplification method

Bordetella pertussis IgA Ab 27 Blood/Serum No Unit 29672-3 Bordetella pertussis Ab.IgA ACnc Pt Ser Ord

Bordetella pertussis IgG Ab For qualitative reporting 27 Blood/Serum No Unit 29674-9 Bordetella pertussis Ab.IgG ACnc Pt Ser Ord

Bordetella pertussis IgG Ab 27 Blood/Serum U/mL 9363-3 Bordetella pertussis Ab.IgG ACnc Pt Ser Qn

Bordetella pertussis IgM Ab 27 Blood/Serum No Unit 29673-1 Bordetella pertussis Ab.IgM ACnc Pt Ser Ord

Bordetella pertussis toxin IgA Ab 33 Blood/Serum IU/mL 23830-3 Bordetella pertussis.toxin Ab.IgA ACnc Pt Ser Qn

Bordetella pertussis toxin IgG Ab 33 Blood/Serum IU/mL 23831-1 Bordetella pertussis.toxin Ab.IgG ACnc Pt Ser Qn

Bordetella pertussis toxin IgM Ab 33 Blood/Serum ??? 23832-9 Bordetella pertussis.toxin Ab.IgM ACnc Pt Ser Qn

Brucella Ab For use with agglutination assay 11 Blood/Serum titre 19053-8 Brucella sp Ab Titr Pt Ser Qn Aggl

Brucella Ab For use with complement fixation test 12 Blood/Serum titre 6325-5 Brucella abortus Ab Titr Pt Ser Qn Comp fix

Brucella IgG Ab 16 Blood/Serum No Unit 24396-4 Brucella sp Ab.IgG ACnc Pt Ser Ord

Brucella IgM Ab 15 Blood/Serum No Unit 24397-2 Brucella sp Ab.IgM ACnc Pt Ser Ord

Chikungunya virus RNA 21 Any No Unit 51664-1 Chikungunya virus RNA ACnc Pt XXX Ord Probe.amp.tar Chikungunya virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Chikungunya virus Total Ab 26 Blood/Serum titre 43064-5 Chikungunya virus Ab Titr Pt Ser Qn

Chlamydia sp IgA Ab 21 Blood/Serum No Unit 29677-2 Chlamydia sp Ab.IgA ACnc Pt Ser Ord

Chlamydia sp IgG Ab 21 Blood/Serum No Unit 21185-4 Chlamydia sp Ab.IgG ACnc Pt Ser Ord

Chlamydia sp IgM Ab 21 Blood/Serum No Unit 21186-2 Chlamydia sp Ab.IgM ACnc Pt Ser Ord

Chlamydia sp total Ab 21 Blood/Serum No Unit 45012-2 Chlamydia sp Ab ACnc Pt Ser Ord

Chlamydia trachomatis DNA 25 Any No Unit 21613-5 Chlamydia trachomatis DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis DNA [Presence] in Unspecified specimen by Probe and target amplification method

Chlamydia trachomatis IgA Ab 28 Blood/Serum No Unit 45005-6 Chlamydia trachomatis Ab.IgA ACnc Pt Ser Ord

Chlamydia trachomatis IgG Ab 28 Blood/Serum No Unit 43848-1 Chlamydia trachomatis Ab.IgG ACnc Pt Ser Ord

Chlamydia trachomatis IgM Ab 28 Blood/Serum No Unit 41157-9 Chlamydia trachomatis Ab.IgM ACnc Pt Ser Ord

Chlamydia trachomatis L2 DNA) Lymphogranuloma venerum 29 Any No Unit 47211-8 Chlamydia trachomatis L2 DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis L2 DNA [Presence] in Unspecified specimen by Probe and target amplification method

Chlamydia trachomatis total Ab 30 Blood/Serum titre 22187-9 Chlamydia trachomatis Ab Titr Pt Ser Qn

Chlamydia trachomatis total Ab

For qualitative reporting other than immunofluoresence

methods 30 Blood/Serum No Unit 30204-2 Chlamydia trachomatis Ab ACnc Pt Ser Ord

Chlamydia trachomatis total Ab

For qualitative reporting with immunofluoresence

methodsmethods 31 Any No Unit 6355-2 Chlamydia trachomatis Ag ACnc Pt XXX Ord IF

Chlamydophila pneumoniae IgA Ab Chlamydia pneumoniae IgA Ab For qualitative reporting 31 Blood/Serum No Unit 44982-7 Chlamydophila pneumoniae Ab.IgA ACnc Pt Ser Ord

Chlamydophila pneumoniae IgA Ab 34 Blood/Serum titre 22170-5 Chlamydophila pneumoniae Ab.IgA Titr Pt Ser Qn

Chlamydophila pneumoniae IgG Ab For qualitative reporting 33 Blood/Serum No Unit 44981-9 Chlamydophila pneumoniae Ab.IgG ACnc Pt Ser Ord

Chlamydophila pneumoniae IgG Ab 34 Blood/Serum titre 22172-1 Chlamydophila pneumoniae Ab.IgG Titr Pt Ser Qn

Chlamydophila pneumoniae IgM Ab For qualitative reporting 33 Blood/Serum No Unit 24004-4 Chlamydophila pneumoniae Ab.IgM ACnc Pt Ser Ord

Chlamydophila pneumoniae IgM Ab 34 Blood/Serum titre 22174-7 Chlamydophila pneumoniae Ab.IgM Titr Pt Ser Qn

Chlamydophila pneumoniae Total Ab 36 Blood/Serum titre 11254-0 Chlamydophila pneumoniae Ab Titr Pt Ser Qn

Chlamydophila psittaci Total Ab Chlamydia psittaci Total Ab 31 Blood/Serum titre 22176-2 Chlamydophila psittaci Ab Titr Pt Ser Qn

Clostridium difficile DNA 25 Any No Unit 61367-9 Clostridium difficile DNA ACnc Pt XXX Ord Probe.amp.tar Clostridium difficile DNA [Presence] in Unspecified specimen by Probe and target amplification method

Clostridium difficile glutamate dehydrogenase 45 Stool No Unit 57901-1 Clostridium difficile glutamate dehydrogenaseACnc Pt Stool Ord Clostridium difficile glutamate dehydrogenase [Presence] in Stool

Clostridium difficile toxin A+B 31 Stool No Unit 34713-8 Clostridium difficile toxin A+B ACnc Pt Stool Ord Clostridium difficile toxin A+B [Presence] in Stool

Clostridium difficile toxin genes faeces For molecular assay 40 Stool No Unit 54067-4 Clostridium difficile toxin genes ACnc Pt Stool Ord Probe.amp.tar Clostridium difficile toxin genes [Presence] in Stool by Probe and target amplification method

Cryptococcus Ag 15 Blood/Serum No Unit 31790-9 Cryptococcus sp Ag ACnc Pt Ser Ord

Cryptococcus Ag 16 Blood/Serum titre 40768-4 Cryptococcus sp Ag Titr Pt Ser Qn

Cryptococcus Ag CSF 19 CSF No Unit 31788-3 Cryptococcus sp Ag ACnc Pt CSF Ord Cryptococcus sp Ag [Presence] in Cerebral spinal fluid

Cryptococcus Ag CSF 19 CSF titre 9819-4 Cryptococcus sp Ag Titr Pt CSF Qn LA Cryptococcus sp Ag [Titer] in Cerebral spinal fluid by Latex agglutination

Cytomegalovirus Ab IgG avidity 30 Blood/Serum % 52984-2 Cytomegalovirus Ab.IgG avidity Ratio Pt Ser Qn EIA Cytomegalovirus IgG Ab avidity [Ratio] in Serum by Immunoassay

Cytomegalovirus DNA For qualitative reporting 19 Any No Unit 5000-5 Cytomegalovirus DNA ACnc Pt XXX Ord Probe.amp.tar Cytomegalovirus DNA [Presence] in Unspecified specimen by Probe and target amplification method

Cytomegalovirus DNA For quantitative reporting in log copies/mL 19 Any log copies/mL 53763-9 Cytomegalovirus DNA LnCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus DNA [Log #/volume] (viral load) in Unspecified specimen by Probe and target amplification method

Cytomegalovirus DNA For quantitative reporting in copies/mL 19 Any copies/mL 33006-8 Cytomegalovirus DNA NCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus DNA [#/volume] (viral load) in Unspecified specimen by Probe and target amplification method

Cytomegalovirus IgG Ab For qualitative reporting 23 Blood/Serum No Unit 22244-8 Cytomegalovirus Ab.IgG ACnc Pt Ser Ord

Cytomegalovirus IgG Ab 23 Blood/Serum U/mL 7852-7 Cytomegalovirus Ab.IgG ACnc Pt Ser Qn

Cytomegalovirus IgM Ab For qualitative reporting 23 Blood/Serum No Unit 30325-5 Cytomegalovirus Ab.IgM ACnc Pt Ser Ord

Cytomegalovirus IgM Ab For quantitative reporting in titres 24 Blood/Serum titre 22249-7 Cytomegalovirus Ab.IgM Titr Pt Ser Qn

Cytomegalovirus IgM Ab For quantitative reporting in units/mL 24 Blood/Serum U/mL 7853-5 Cytomegalovirus Ab.IgM ACnc Pt Ser Qn

Cytomegalovirus Total Ab 24 Blood/Serum titre 22241-4 Cytomegalovirus Ab Titr Pt Ser Qn

Dengue virus 1 RNA 18 Blood/Serum No Unit 60262-3 Dengue virus 1 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 1 RNA [Presence] in Serum by Probe and target amplification method




Dengue virus group RNA 22 Blood/Serum No Unit 7855-0 Dengue virus 1, 2, 3, 4 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 1, 2, 3, 4 RNA [Presence] in Serum by Probe and target amplification method

Dengue virus IgG Ab 21 Blood/Serum No Unit 29676-4 Dengue virus Ab.IgG ACnc Pt Ser Ord

Dengue virus IgM Ab 20 Blood/Serum No Unit 25338-5 Dengue virus Ab.IgM ACnc Pt Ser Ord

Dengue virus IgM Ab 20 Blood/Serum titre 6812-2 Dengue virus Ab.IgM Titr Pt Ser Qn

Dengue virus NS1 Ag 19 Blood/Serum No Unit 31798-2 Dengue virus Ag ACnc Pt Ser Ord

Dengue virus total Ab 21 Blood/Serum titre 33606-5 Dengue virus Ab Titr Pt Ser Qn

Entamoeba histolytica Ab 25 Blood/Serum titre 22286-9 Entamoeba histolytica Ab Titr Pt Ser Qn

Enterovirus RNA 15 Any No Unit 29591-5 Enterovirus RNA ACnc Pt XXX Ord Probe.amp.tar Enterovirus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Enterovirus subtype RNA 23 Any No Unit 60528-7 Enterovirus subtype Type Pt XXX Nom Probe.amp.tar Enterovirus subtype [Type] in Unspecified specimen by Probe and target amplification method

Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For quantitative reporting in units/mL 39 Blood/Serum U/mL 7885-7 Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Qn

Epstein Barr virus virus capsid Ab IgM EBV VCA IgM 39 Blood/Serum No Unit 30340-4 Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Ord

Epstein Barr virus Ab VCA IgG avidity 37 Blood/Serum % XXXXX-X Epstein Barr virus capsid Ab.IgG avidity Ratio Pt Ser Qn EIA Epstein Barr virus capsid IgG Ab avidity [Ratio] in Serum by Immunoassay

Epstein Barr virus capsid Ab IgM EBV VCA IgM 32 Blood/Serum titre 20491-7 Epstein Barr virus capsid Ab.IgM Titr Pt Ser Qn

Epstein Barr virus capsid Ab IgM EBV VCA IgM 32 Blood/Serum U/mL 7886-5 Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Qn

Epstein Barr virus early Ab IgA EBV EA IgA 32 Blood/Serum titre 47435-3 Epstein Barr virus early Ab.IgA Titr Pt Ser Qn

Epstein Barr virus early Ab IgG EBV EA IgG 32 Blood/Serum No Unit 22295-0 Epstein Barr virus early Ab.IgG ACnc Pt Ser Ord

Epstein Barr virus nuclear Ab IgG EBNA IgG For qualitative reporting 34 Blood/Serum No Unit 7883-2 Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Ord

Epstein Barr virus nuclear Ab IgG EBNA IgG 35 Blood/Serum U/mL 31374-2 Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Qn

Page 3 of 8


Epstein Barr virus nuclear Ab IgM EBNA IgM 34 Blood/Serum No Unit 7884-0 Epstein Barr virus nuclear Ab.IgM ACnc Pt Ser Ord

Epstein Barr virus capsid Ab IgG EBV VCA IgG For qualitative reporting 32 Blood/Serum No Unit 30339-6 Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Ord

Epstein Barr virus capsid Ab IgG EBV VCA IgG For quantitative reporting in titres 32 Blood/Serum titre 20490-9 Epstein Barr virus capsid Ab.IgG Titr Pt Ser Qn

Flavivirus Group RNA 20 Any No Unit 51665-8 Flavivirus RNA ACnc Pt XXX Ord Probe.amp.tar Flavivirus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Francisella tularensis DNA 26 Any No Unit 33679-2 Francisella tularensis DNA ACnc Pt XXX Ord Probe.amp.tar Francisella tularensis DNA [Presence] in Unspecified specimen by Probe and target amplification method

Helicobacter pylori IgA Ab For qualitative reporting 27 Blood/Serum No Unit 16125-7 Helicobacter pylori Ab.IgA ACnc Pt Ser Ord

Helicobacter pylori IgA Ab 28 Blood/Serum U/mL 7901-2 Helicobacter pylori Ab.IgA ACnc Pt Ser Qn

Helicobacter pylori IgG Ab For qualitative reporting 27 Blood/Serum No Unit 16126-5 Helicobacter pylori Ab.IgG ACnc Pt Ser Ord

Helicobacter pylori IgG Ab 28 Blood/Serum U/mL 7902-0 Helicobacter pylori Ab.IgG ACnc Pt Ser Qn

Hendra virus RNA 16 Any No Unit XXXXX-X Hendra virus RNA ACnc Pt XXX Ord Probe.amp.tar Hendra virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Helicobacter pylori Total Ab For qualitative reporting 28 Blood/Serum No Unit 22310-7 Helicobacter pylori Ab ACnc Pt Ser Ord

Helicobacter pylori Total Ab 28 Blood/Serum U/mL 7900-4 Helicobacter pylori Ab ACnc Pt Ser Qn

Hepatitis A IgG Ab 19 Blood/Serum No Unit 32018-4 Hepatitis A virus Ab.IgG ACnc Pt Ser Ord

Hepatitis A IgM Ab 19 Blood/Serum No Unit 22314-9 Hepatitis A virus Ab.IgM ACnc Pt Ser Ord

Hepatitis A Total Ab 20 Blood/Serum No Unit 20575-7 Hepatitis A virus Ab ACnc Pt Ser Ord

Hepatitis B core Ab 19 Blood/Serum No Unit 16933-4 Hepatitis B virus core Ab ACnc Pt Ser Ord

Hepatitis B core IgM Ab 23 Blood/Serum No Unit 31204-1 Hepatitis B virus core Ab.IgM ACnc Pt Ser Ord

Hepatitis B e Ab 17 Blood/Serum No Unit 22320-6 Hepatitis B virus little e Ab ACnc Pt Ser Ord

Hepatitis B e Ag 16 Blood/Serum No Unit 31844-4 Hepatitis B virus little e Ag ACnc Pt Ser Ord

Hepatitis B surface Ab 23 Blood/Serum IU/L 16935-9 Hepatitis B virus surface Ab ACnc Pt Ser Qn

Hepatitis B surface Ag 22 Blood/Serum IU/mL 58452-4 Hepatitis B virus surface Ag ACnc Pt Ser Qn

Hepatitis B surface Ag For qualitative reporting 22 Blood/Serum No Unit 5195-3 Hepatitis B virus surface Ag ACnc Pt Ser Ord

Hepatitis B Surface Ag Use as supplementary assay 22 Blood/Serum No Unit 65633-0 Hepatitis B virus surface Ag ACnc Pt Ser Ord Confirm

Hepatitis B Surface Ag Use as supplementary assay - neutralisation 23 Blood/Serum No Unit 7905-3 Hepatitis B virus surface Ag ACnc Pt Ser Ord Neut

Hepatitis B virus DNA For qualitative reporting 21 Blood/Serum No Unit 29610-3 Hepatitis B virus DNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis B virus DNA [Presence] in Serum or Plasma by Probe and target amplification method

Hepatitis B virus DNA For quantitative reporting in international units/mL 21 Blood/Serum IU/mL 42595-9 Hepatitis B virus DNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA [Units/volume] (viral load) in Serum or Plasma by Probe and target amplification method

Hepatitis B virus DNA For quantitative reporting in log international units/mL 21 Blood/Serum log IU/mL 49600-0 Hepatitis B virus DNA LaCnc Pt XXX Qn Probe.amp.tar Hepatitis B virus DNA [log units/volume] (viral load) in Unspecified specimen by Probe and target amplification method

Hepatitis B virus DNA fluid For qualitative reporting 27 Any No Unit 5009-6 Hepatitis B virus DNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis B virus DNA [Presence] in Unspecified specimen by Probe and target amplification method

Hepatitis B virus DNA fluid For quantitative reporting in log international units/mL 27 Any log IU/mL 48398-2 Hepatitis B virus DNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA [log units/volume] (viral load) in Serum or Plasma by Probe and target amplification method

Hepatitis B virus DNA fluid For quantitative reporting in international units/mL 27 Any IU/mL 49360-1 Hepatitis B virus DNA ACnc Pt XXX Qn Probe.amp.tar Hepatitis B virus DNA [Units/volume] (viral load) in Unspecified specimen by Probe and target amplification method

Hepatitis C Ab Use for screening and supplementary tests 14 Blood/Serum No Unit 16128-1 Hepatitis C virus Ab ACnc Pt Ser Ord

Hepatitis C Ag, Ab New LOINC required 19 Blood/Serum No Unit XXXXX-X Hepatitis C virus 1 Ab, Ag ACnc Pt Ser Ord Hepatitis C virus 1 Ab, Ag [Presence] in Serum

Hepatitis C Ab immunoblot Use as supplementary test - immunoblot 25 Blood/Serum No Unit 5199-5 Hepatitis C virus Ab ACnc Pt Ser Ord IB

Hepatitis C Ag 14 Blood/Serum pg/ml 54914-7 Hepatitis C virus Ag ACnc Pt Ser Qn EIA

Hepatitis C virus Genotyping 28 Blood/Serum No Unit 32286-7 Hepatitis C virus genotype Prid Pt Ser/Plas Nom Probe.amp.tar Hepatitis C virus genotype [Identifier] in Serum or Plasma by Probe and target amplification method

Hepatitis C virus RNA 21 Blood/Serum No Unit 11259-9 Hepatitis C virus RNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis C virus RNA [Presence] in Serum or Plasma by Probe and target amplification method

Hepatitis C virus RNA For quantitative reporting in international units/mL 21 Blood/Serum IU/mL 11011-4 Hepatitis C virus RNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA [Units/volume] (viral load) in Serum or Plasma by Probe and target amplification method

Hepatitis C virus RNA For quantitative reporting in log international units/mL 21 Blood/Serum log IU/mL 38180-6 Hepatitis C virus RNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA [log units/volume] (viral load) in Serum or Plasma by Probe and target amplification method

Hepatitis C virus RNA fluid 27 Any No Unit 5012-0 Hepatitis C virus RNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis C virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Hepatitis D D Ag 17 Blood/Serum No Unit 33464-9 Hepatitis D virus Ag ACnc Pt Ser Ord

Hepatitis D IgM Ab 19 Blood/Serum No Unit 34597-5 Hepatitis D virus Ab.IgM ACnc Pt Ser Ord

Hepatitis D Total Ab 20 Blood/Serum No Unit 13248-0 Hepatitis D virus Ab ACnc Pt Ser Ord

Hepatitis E IgG Ab 18 Blood/Serum No Unit 14211-7 Hepatitis E virus Ab.IgG ACnc Pt Ser Ord

Hepatitis E IgM Ab 18 Blood/Serum No Unit 14212-5 Hepatitis E virus Ab.IgM ACnc Pt Ser Ord

Hepatitis E Total Ab 20 Blood/Serum No Unit 13294-4 Hepatitis E virus Ab ACnc Pt Ser Ord

Herpes simplex 1 IgG Ab For quantitative reporting in titre 26 Blood/Serum titre XXXXX-X Herpes simplex virus 1 Ab.IgG Titr Pt Ser Qn Herpes simplex virus 2 IgG Ab [Titer] in Serum

Herpes simplex 1 IgG Ab For qualitative reporting 26 Blood/Serum No Unit 17850-9 Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Ord

Herpes simplex 1 IgG Ab For quantitative reporting in units/mL 26 Blood/Serum U/mL 7909-5 Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Qn

Herpes simplex 1 IgM Ab For qualitative reporting 24 Blood/Serum No Unit 32687-6 Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Ord

Herpes simplex 1 IgM Ab For quantitative reporting in titre 27 Blood/Serum titre 21326-4 Herpes simplex virus 1 Ab.IgM Titr Pt Ser Qn

Herpes simplex 1 IgM Ab For quantitative reporting in units/mL 27 Blood/Serum U/mL 7910-3 Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Qn

Herpes simplex 2 IgG Ab For qualitative reporting 26 Blood/Serum No Unit 17851-7 Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Ord

Herpes simplex 2 IgG Ab For quantitative reporting in titre 27 Blood/Serum titre 24014-3 Herpes simplex virus 2 Ab.IgG Titr Pt Ser Qn

Herpes simplex 2 IgG Ab For quantitative reporting in units/mL 27 Blood/Serum U/mL 7912-9 Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Qn

Herpes simplex 2 IgM Ab For qualitative reporting 24 Blood/Serum No Unit 32688-4 Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Ord

Herpes simplex 2 IgM Ab For quantitative reporting in titre 27 Blood/Serum titre 21327-2 Herpes simplex virus 2 Ab.IgM Titr Pt Ser Qn

Herpes simplex 2 IgM Ab For quantitative reporting in units/mL 27 Blood/Serum U/mL 7913-7 Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Qn

Herpes simplex 1 & 2 IgG Ab For quantitative reporting in units/mL 29 Blood/Serum U/mL 31411-2 Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Qn

Herpes simplex 1 & 2 IgG Ab For quantitative reporting in titre 29 Blood/Serum titre 34613-0 Herpes simplex virus 1, 2 Ab.IgG Titr Pt Ser Qn

Herpes simplex 1 & 2 IgG Ab For qualitative reporting 29 Blood/Serum No Unit 36921-5 Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Ord

Herpes simplex 1 & 2 IgM Ab For qualitative reporting 27 Blood/Serum No Unit 41149-6 Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Ord

Herpes simplex 1 & 2 IgM Ab For quantitative reporting in titre 30 Blood/Serum titre 34152-9 Herpes simplex virus 1, 2 Ab.IgM Titr Pt Ser Qn

Herpes simplex 1 & 2 IgM Ab For quantitative reporting in units/mL 30 Blood/Serum U/mL 43030-6 Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Qn

Herpes simplex Virus 1 & 2 total Ab For qualitative reporting 35 Blood/Serum No Unit 22339-6 Herpes simplex virus Ab ACnc Pt Ser Ord

Herpes simplex Virus 1 & 2 total Ab For qualitative reporting with immunoblot 35 Blood/Serum No Unit 16942-5 Herpes simplex virus Ab ACnc Pt Ser Ord IB

Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in titre 37 Blood/Serum titre 22341-2 Herpes simplex virus Ab Titr Pt Ser Qn

Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in units/mL 37 Blood/Serum U/mL 7907-9 Herpes simplex virus Ab ACnc Pt Ser Qn

Herpes simplex Virus 1 & 2 total Ab CSF 39 CSF titre 22340-4 Herpes simplex virus Ab Titr Pt CSF Qn

Herpes simplex virus type 1 DNA fluid 37 Any No Unit 16130-7 Herpes simplex virus 1 DNA ACnc Pt XXX Ord Probe.amp.tar Herpes simplex virus 1 DNA [Presence] in Unspecified specimen by Probe and target amplification method

Herpes simplex virus type 2 DNA fluid 37 Any No Unit 16131-5 Herpes simplex virus 2 DNA ACnc Pt XXX Ord Probe.amp.tar Herpes simplex virus 2 DNA [Presence] in Unspecified specimen by Probe and target amplification method

HIV 1 gp41 band With western blot method 16 Blood/Serum No Unit 9662-8 HIV 1 gp41 Ab ACnc Pt Ser Ord IB

HIV 1 p15 band With western blot method 15 Blood/Serum No Unit 12872-8 HIV 1 p15 Ab ACnc Pt Ser Ord IB


HIV 1 p17, p18 bands With western blot method 21 Blood/Serum No Unit 32827-8 HIV 1 p17, p18 Ab ACnc Pt Ser Ord IB




HIV 1 p32 band With western blot method 15 Blood/Serum No Unit 35564-4 HIV 1 p31, p32 Ab ACnc Pt Ser Ord IB







HIV 1 Ag confirmatory Test 26 Blood/Serum No Unit 33660-2 HIV 1 p24 Ag ACnc Pt Ser Ord Neut

Page 4 of 8


HIV 1 confirmatory test With western blot method 23 Blood/Serum No Unit 13499-9 HIV 1 Ab band pattern Imp Pt Ser Nom IB



HIV 1 RNA For specimens other than blood 9 Any log copies/mL 49890-7 HIV 1 RNA LnCnc Pt XXX Qn Probe.amp.tar HIV 1 RNA [Log #/volume] (viral load) in Unspecified specimen by Probe and target amplification method

HIV 1 RNA 10 Blood/Serum copies/mL 20447-9 HIV 1 RNA NCnc Pt Ser/Plas Qn Probe.amp.tar HIV 1 RNA [#/volume] (viral load) in Serum or Plasma by Probe and target amplification method

HIV 1 RNA For specimens other than blood 10 Any copies/mL 25836-8 HIV 1 RNA NCnc Pt XXX Qn Probe.amp.tar HIV 1 RNA [#/volume] (viral load) in Unspecified specimen by Probe and target amplification method

HIV 2 confirmatory test With western blot method 23 Blood/Serum No Unit 31073-0 HIV 2 Ab band pattern Imp Pt Ser Nom IB


HIV 2 RNA Quantitative With western blot method 22 Blood/Serum IU/mL 69354-9 HIV 2 RNA ACnc Pt Ser/Plas Qn Probe.amp.tar HIV 2 RNA [Units/volume] (viral load) in Serum or Plasma by Probe and target amplification method

HIV Ab 7 Blood/Serum No Unit 48345-3 HIV 1, O, 2 Ab ACnc Pt Ser/Plas Ord

HIV Ag Rapid tests 18 Blood/Serum No Unit 24012-7 HIV 1 Ag ACnc Pt Ser Ord

HIV Ag/Ab Combination 22 Blood/Serum No Unit 56888-1 HIV 1, 2 Ab, HIV1 p24 Ag ACnc Pt Ser Ord EIA HIV 1, 2 Ab, HIV1 p24 Ag [Presence] in Serum by Immunoassay

HIV p24 Ag 11 Blood/Serum pg/mL 42339-2 HIV 1 p24 Ag MCnc Pt Ser Qn EIA

HIV p24 Ag 11 Blood/Serum No Unit 9821-0 HIV 1 p24 Ag ACnc Pt Ser Ord

HIV2 Ab 8 Blood/Serum No Unit 7919-4 HIV 2 Ab ACnc Pt Ser Ord

HTLV Ab 8 Blood/Serum No Unit 22362-8 HTLV 1, 2 Ab ACnc Pt Ser Ord HTLV 1, 2 Ab [Presence] in Serum

HTLV Ab Supplementary test with immunoblot 8 Blood/Serum No Unit 16982-1 HTLV 1, 2 Ab ACnc Pt Ser Ord IB HTLV 1, 2 Ab [Presence] in Serum by Immunoblot (IB)

Human Papilloma virus DNA 26 Any No Unit 44547-8 Human papilloma virus DNA ACnc Pt XXX Ord Probe.amp.sig Human papilloma virus DNA [Presence] in Unspecified specimen by Probe and signal amplification method

Human Papilloma virus Genotyping 32 Any No Unit 48560-7 Human papilloma virus genotype Prid Pt XXX Nom Probe.amp.tar Human papilloma virus genotype [Identifier] in Unspecified specimen by Probe and target amplification method

Human Papilloma virus high risk type DNA

For use with Digene method detecting high risk types 16, 18,

31, 33, 35, 39, 45, 51, 52, 56, 58, 59 and 68 40 Cervical No Unit 30167-1 Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68 DNAACnc Pt Cvx Ord Probe.amp.sig

Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68 DNA [Presence] in Cervix by Probe and signal

amplification method

Human Papilloma virus high risk type DNA

For use with Roche Cobas 4800 Human Papilloma virus assay

detecting high risk types 31, 33, 35, 39, 45, 51, 52, 56,58, 59,

66 and 68 40 Cervical No Unit 71431-1 Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68 DNAThreshold Pt Cvx Ord Probe.amp.tar

Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68 DNA [Presence] in Cervix by Probe and target amplification

method

Human Papilloma virus type 16 DNA 34 Cervical No Unit 59263-4 Human papilloma virus 16 DNA ACnc Pt Cvx Ord Probe.amp.sig Human papilloma virus 16 DNA [Presence] in Cervix by Probe and signal amplification method

Human Papilloma virus type 18 DNA 33 Cervical No Unit 59264-2 Human papilloma virus 18 DNA ACnc Pt Cvx Ord Probe.amp.sig Human papilloma virus 18 DNA [Presence] in Cervix by Probe and signal amplification method

Hydatid total Ab For qualitative reporting 16 Blood/Serum No Unit 25339-3 Echinococcus sp Ab ACnc Pt Ser Ord

Hydatid total Ab 18 Blood/Serum titre 25867-3 Echinococcus sp Ab Titr Pt Ser Qn

Influenza A Ag For qualitative reporting with immunochromatographic test 14 Any No Unit 31859-2 Influenza virus A Ag ACnc Pt XXX Ord

Influenza A Ag For qualitative reporting with immunofluorescence method 14 Any No Unit 5863-6 Influenza virus A Ag ACnc Pt XXX Ord IF

Influenza A IgA Ab 18 Blood/Serum No Unit 43851-5 Influenza virus A Ab.IgA ACnc Pt Ser Ord

Influenza A IgG Ab 18 Blood/Serum No Unit 43837-4 Influenza virus A Ab.IgG ACnc Pt Ser Ord

Influenza A IgM Ab 18 Blood/Serum No Unit 43838-2 Influenza virus A Ab.IgM ACnc Pt Ser Ord

Influenza A RNA 15 Any No Unit 34487-9 Influenza virus A RNA ACnc Pt XXX Ord Probe.amp.tar Influenza virus A RNA [Presence] in Unspecified specimen by Probe and target amplification method

Influenza A Subtype 19 Any No Unit 22827-0 Influenza virus A subtype Prid Pt XXX Nom Probe.amp.tar Influenza virus A subtype [Identifier] in Unspecified specimen by Probe and target amplification method

Influenza A total Ab For qualitative reporting 20 Blood/Serum No Unit 22096-2 Influenza virus A Ab ACnc Pt Ser Ord

Influenza A total Ab For quantitative reporting with complement fixation method 20 Blood/Serum titre 5229-0 Influenza virus A Ab Titr Pt Ser Qn Comp fix

Influenza A total Ab For quantitative reporting with complement fixation method 20 Blood/Serum titre 22824-7 Influenza virus A Ab Titr Pt Ser Qn HAI

Influenza A total Ab

For quantitative reporting with methods other than

hemagglutination inhibition assay or complement fixation

method 20 Blood/Serum titre 22365-1 Influenza virus A Ab Titr Pt Ser Qn

Influenza B Ag For qualitative reporting with complement fixation method 14 Any No Unit 31864-2 Influenza virus B Ag ACnc Pt XXX Ord

Influenza B Ag For qualitative reporting with immunofluorescence method 14 Any No Unit 5867-7 Influenza virus B Ag ACnc Pt XXX Ord IF

Influenza B IgA Ab 18 Blood/Serum No Unit 43852-3 Influenza virus B Ab.IgA ACnc Pt Ser Ord

Influenza B IgG Ab 18 Blood/Serum No Unit 43839-0 Influenza virus B Ab.IgG ACnc Pt Ser Ord

Influenza B IgM Ab 18 Blood/Serum No Unit 43840-8 Influenza virus B Ab.IgM ACnc Pt Ser Ord

Influenza B RNA 15 Any No Unit 40982-1 Influenza virus B RNA ACnc Pt XXX Ord Probe.amp.tar Influenza virus B RNA [Presence] in Unspecified specimen by Probe and target amplification method

Influenza B Total Ab 20 Blood/Serum No Unit 44570-0 Influenza virus B Ab ACnc Pt Ser Ord

Influenza B Total Complement Fixation Ab For quantitative reporting with complement fixation method 40 Blood/Serum titre 5230-8 Influenza virus B Ab Titr Pt Ser Qn Comp fix

Influenza B Total HAI Ab For quantitative reporting with complement fixation method 24 Blood/Serum titre 50709-5 Influenza virus B Ab Titr Pt Ser Qn HAI

Influenza B Total Methodless Ab

For quantitative reporting with methods other than

hemagglutination inhibition assay or complement fixation

method 31 Blood/Serum titre 22367-7 Influenza virus B Ab Titr Pt Ser Qn

Interferon gamma release assay For use with assays like QuantiFERON®-TB 30 Blood/Serum No Unit 45323-3 Mycobacterium tuberculosis tuberculin stimulated gamma interferonACnc Pt Bld Ord

Kunjin virus RNA 16 Any No Unit XXXXX-X Kunjin virus RNA ACnc Pt XXX Ord Probe.amp.tar Kunjin virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Japanese encephalitis virus RNA 32 Any No Unit 51666-6 Japanese encephalitis virus RNA ACnc Pt XXX Ord Probe.amp.tar Japanese encephalitis virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

JC virus DNA 12 Any No Unit 42921-7 JC virus DNA ACnc Pt XXX Ord Probe.amp.tar JC virus DNA [Presence] in Unspecified specimen by Probe and target amplification method

Legionella Ag Urine pneumophila 1 specific assay 19 Urine No Unit 31868-3 Legionella pneumophila 1 Ag ACnc Pt Urine Ord

Legionella longbeachae 1 IgM Ab 31 Blood/Serum No Unit 17054-8 Legionella longbeachae 1 Ab.IgM ACnc Pt Ser Ord

Legionella longbeachae 2 IgM Ab For qualitative reporting 31 Blood/Serum No Unit 17056-3 Legionella longbeachae 2 Ab.IgM ACnc Pt Ser Ord

Legionella longbeachae total Ab 31 Blood/Serum No Unit 13255-5 Legionella longbeachae 1, 2 Ab ACnc Pt Ser Ord

Legionella longbeachae total Ab 31 Blood/Serum titre 32694-2 Legionella longbeachae 1, 2 Ab Titr Pt Ser Qn

Legionella pneumophila 1 IgM Ab 31 Blood/Serum titre 22382-6 Legionella pneumophila 1 Ab.IgM Titr Pt Ser Qn

Legionella pneumophila 1 IgM Ab For qualitative reporting 32 Blood/Serum No Unit 35395-3 Legionella pneumophila 1 Ab.IgM ACnc Pt Ser Ord

Legionella pneumophila 1 total Ab 33 Blood/Serum titre 17060-5 Legionella pneumophila 1 Ab Titr Pt Ser Qn

Legionella pneumophila 1 total Ab 34 Blood/Serum No Unit 40840-1 Legionella pneumophila 1 Ab ACnc Pt Ser Ord

Legionella pneumophila IgG Ab 29 Blood/Serum titre 21362-9 Legionella pneumophila Ab.IgG Titr Pt Ser Qn IF

Legionella pneumophila IgM Ab 29 Blood/Serum No Unit 49914-5 Legionella pneumophila 1, 2, 3, 4, 5, 6 Ab.IgMACnc Pt Ser Ord

Legionella sp IgM Ab 20 Blood/Serum No Unit XXXXX-X Legionella sp Ab.IgM ACnc Pt Ser Ord Legionella sp IgM Ab [Presence] in Serum

Legionella pneumophila Total Ab 32 Blood/Serum titre 5237-3 Legionella pneumophila Ab Titr Pt Ser Qn IF

Legionella sp IgG Ab 20 Blood/Serum No Unit 49915-2 Legionella sp Ab.IgG ACnc Pt Ser Ord

Leptospira borgpetersenii serovar Arborea Ab 44 Serum titre XXXXX-X Leptospira borgpetersenii serovar Arborea AbTitr Pt Ser Qn Aggl Leptospira interrogans sv Arborea Ab [Titer] in Serum by Agglutination

Legionella sp IgM Ab 22 Blood/Serum titre 39559-0 Legionella sp Ab.IgM Titr Pt Ser Qn

Legionella sp total Ab 24 Blood/Serum titre 22399-0 Legionella sp Ab Titr Pt Ser Qn

Leptospira borgpetersenii serovar Ballum Ab 43 Serum titre 42996-9 Leptospira borgpetersenii serovar Ballum AbTitr Pt Ser Qn Leptospira borgpetersenii sv Ballum Ab [Titer] in Serum

Leptospira borgpetersenii serovar Tarassovi Ab 46 Blood/Serum titre 42995-1 Leptospira borgpetersenii serovar Tarrasovi AbTitr Pt Ser Qn

Leptospira interrogans Ab 25 Blood/Serum titre 56952-5 Leptospira interrogans Ab Titr Pt Ser Qn Aggl

Leptospira interrogans serovar Bulgarica Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Bulgarica Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Bulgarica Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Australis Ab 43 Blood/Serum titre 59370-7 Leptospira interrogans serovar Australis Ab Titr Pt Ser Qn Aggl

Leptospira interrogans serovar Celledoni Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Celledoni Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Celledoni Ab [Titer] in Serum by Agglutination

Page 5 of 8


Leptospira interrogans serovar Copenhageni Ab 45 Serum titre XXXXX-X Leptospira interrogans serovar Copenhageni AbTitr Pt Ser Qn Aggl Leptospira interrogans sv Copenhageni Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Cynopteri Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Cynopteri Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Cynopteri Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Cynopteri Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Cynopteri Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Cynopteri Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Bataviae Ab 42 Blood/Serum titre 59368-1 Leptospira interrogans serovar Bataviae Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Bataviae Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Canicola Ab 42 Blood/Serum titre 22401-4 Leptospira interrogans serovar Canicola Ab Titr Pt Ser Qn

Leptospira interrogans serovar Grippotyphosa Ab 47 Blood/Serum titre 15478-1 Leptospira interrogans serovar Grippotyphosa AbTitr Pt Ser Qn Aggl

Leptospira interrogans serovar Hardjo Ab 40 Blood/Serum titre 15479-9 Leptospira interrogans serovar Hardjo Ab Titr Pt Ser Qn Aggl

Leptospira interrogans serovar Kremastos Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Kremastos AbTitr Pt Ser Qn Aggl Leptospira interrogans sv Kremastos Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Medanensis Ab 44 Serum titre XXXXX-X Leptospira interrogans serovar Medanensis AbTitr Pt Ser Qn Aggl Leptospira interrogans sv Medanensis Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Panama Ab 40 Serum titre XXXXX-X Leptospira interrogans serovar Panama Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Panama Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Icterohaemorrhagiae

Ab 53 Blood/Serum titre 15480-7 Leptospira interrogans serovar Icterohaemorrhagiae AbTitr Pt Ser Qn Aggl

Leptospira interrogans serovar Javanica Ab 42 Blood/Serum titre 59422-6 Leptospira interrogans serovar Javanica Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Javanica Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Robinsoni Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Robinsoni Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Robinsoni Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Shermani Ab 42 Serum titre XXXXX-X Leptospira interrogans serovar Shermani Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Shermani Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Szwajizak Ab 43 Serum titre XXXXX-X Leptospira interrogans serovar Szwajizak Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Szwajizak Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Pomona Ab 40 Blood/Serum titre 15481-5 Leptospira interrogans serovar Pomona Ab Titr Pt Ser Qn Aggl

Leptospira interrogans serovar Zanoni Ab 40 Serum titre XXXXX-X Leptospira interrogans serovar Zanoni Ab Titr Pt Ser Qn Aggl Leptospira interrogans sv Zanoni Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Pyrogenes Ab 43 Blood/Serum titre 59364-0 Leptospira interrogans serovar Pyrogenes AbTitr Pt Ser Qn Aggl Leptospira interrogans sv Pyrogenes Ab [Titer] in Serum by Agglutination

Leptospira interrogans serovar Tarassovi Ab 43 Blood/Serum titre 59367-3 Leptospira interrogans serovar Tarassovi Ab Titr Pt Ser Qn Aggl

Leptospira weilii serovar Topaz Ab 34 Serum titre XXXXX-X Leptospira weilii serovar Topaz Ab Titr Pt Ser Qn Aggl Leptospira weilii sv Topaz Ab [Titer] in Serum by Agglutination

Leptospira sp IgM Ab 20 Blood/Serum No Unit 23202-5 Leptospira sp Ab.IgM ACnc Pt Ser Ord

Leptospira sp total Ab 22 Blood/Serum titre 7959-0 Leptospira sp Ab Titr Pt Ser Qn

M. tuberculosis ethambutol resistance Molecular assay for (embB) gene mutations 38 Isolate No Unit 46247-3 Mycobacterium tuberculosis ethambutol resistance (embB) genePrid Pt Isolate Nom Probe.amp.tar Mycobacterium tuberculosis ethambutol resistance (embB) gene [Identifier] by Probe and target amplification method

M. tuberculosis isoniazid resistance Molecular assay for (katG , inhA) genes mutations 37 Any No Unit 48175-4 Mycobacterium tuberculosis isoniazid resistance (katG , inhA) genesACnc Pt XXX Ord Probe.amp.tar

Mycobacterium tuberculosis.isoniazid resistantMycobacterium tuberculosis isoniazid resistance (katG , inhA) genes

[Presence] by Probe and target amplification method

M. tuberculosis rifampin resistance Molecular assay for (rpoB) gene mutations 36 Any No Unit 48176-2 Mycobacterium tuberculosis rifampin resistance (rpoB) geneACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis rifampin resistance (rpoB) gene [Presence] by Probe and target amplification method

Measles IgG Ab For qualitative reporting 14 Blood/Serum No Unit 20479-2 Measles virus Ab.IgG ACnc Pt Ser Ord

Measles IgG Ab For quantitative reporting in titres 15 Blood/Serum titre 22502-9 Measles virus Ab.IgG Titr Pt Ser Qn

Measles IgG Ab For quantitative reporting in units/mL 15 Blood/Serum IU/mL 7962-4 Measles virus Ab.IgG ACnc Pt Ser Qn

Measles IgM Ab For qualitative reporting 16 Blood/Serum No Unit 21503-8 Measles virus Ab.IgM ACnc Pt Ser Ord

Measles IgM Ab 16 Blood/Serum titre 22506-0 Measles virus Ab.IgM Titr Pt Ser Qn

Measles Total Ab 17 Blood/Serum titre 22499-8 Measles virus Ab Titr Pt Ser Qn

Measles Total Ab For qualitative reporting 17 Blood/Serum No Unit 46197-0 Measles virus Ab ACnc Pt Ser Ord

Measles virus RNA 17 Any No Unit 48508-6 Measles virus RNA ACnc Pt XXX Ord Probe.amp.tar Measles virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Methicillin resistant Staphylococcus aureus DNA MRSA Molecular assays detecting mecA / nuc gene 47 Any No Unit 35492-8 Staphylococcus aureus.methicillin resistant DNAACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] by Probe and target amplification method

Methicillin resistant Staphylococcus aureus DNA MRSA DNA 47 Any No Unit 35492-8 Staphylococcus aureus.methicillin resistant DNAACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] by Probe and target amplification method

Mumps IgG Ab For qualitative reporting 14 Blood/Serum No Unit 22415-4 Mumps virus Ab.IgG ACnc Pt Ser Ord

Mumps IgG Ab For quantitative reporting in titres 15 Blood/Serum titre 22417-0 Mumps virus Ab.IgG Titr Pt Ser Qn

Mumps IgG Ab For quantitative reporting in units/mL 15 Blood/Serum U/mL 7966-5 Mumps virus Ab.IgG ACnc Pt Ser Qn

Mumps IgG Ab CSF 18 CSF No Unit 39011-2 Mumps virus Ab.IgG ACnc Pt CSF Ord

Mumps IgM Ab For qualitative reporting 14 Blood/Serum No Unit 22418-8 Mumps virus Ab.IgM ACnc Pt Ser Ord

Mumps IgM Ab 14 Blood/Serum titre 22420-4 Mumps virus Ab.IgM Titr Pt Ser Qn

Mumps IgM Ab CSF 18 CSF No Unit 41131-4 Mumps virus Ab.IgM ACnc Pt CSF Ord

Murray Valley encephalitis virus Ab IgG For qualitative reporting 39 Blood/Serum No Unit XXXXX-X Murray Valley encephalitis virus Ab.IgG ACnc Pt Ser Ord Murray Valley encephalitis virus IgG Ab [Presence] in Serum

Murray Valley encephalitis virus Ab IgG 39 Blood/Serum titre XXXXX-X Murray Valley encephalitis virus Ab.IgG Titr Pt Ser Qn Murray Valley encephalitis virus IgG Ab [Titer] in Serum

Murray Valley encephalitis virus Ab IgM For qualitative reporting 39 Blood/Serum No Unit XXXXX-X Murray Valley encephalitis virus Ab.IgM ACnc Pt Ser Ord Murray Valley encephalitis virus IgM Ab [Presence] in Serum

Murray Valley encephalitis virus Ab IgM 39 Blood/Serum titre XXXXX-X Murray Valley encephalitis virus Ab.IgM Titr Pt Ser Qn Murray Valley encephalitis virus IgM Ab [Titer] in Serum

Murray Valley encephalitis virus RNA 36 Any No Unit XXXXX-X Murray Valley Encephalitis virus RNA ACnc Pt XXX Ord Probe.amp.tar Murray Valley Encephalitis virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Murray Valley encephalitis virus Total Ab 41 Blood/Serum No Unit XXXXX-X Murray Valley encephalitis virus Ab ACnc Pt Ser Ord Murray Valley encephalitis virus Ab [Presence] in Serum

Murray Valley encephalitis virus Total Ab 41 Blood/Serum No Unit XXXXX-X Murray Valley encephalitis virus Ab ACnc Pt Ser Ord Murray Valley encephalitis virus Ab [Presence] in Serum

Murray Valley encephalitis virus Total Ab 41 Blood/Serum titre XXXXX-X Murray Valley encephalitis virus Ab Titr Pt Ser Qn Murray Valley encephalitis virus Ab [Titre] in Serum

Mumps Total Ab 16 Blood/Serum titre 22414-7 Mumps virus Ab Titr Pt Ser Qn

Mumps Total Ab For qualitative reporting 16 Blood/Serum No Unit 31503-6 Mumps virus Ab ACnc Pt Ser Ord

Mumps Total Ab CSF 18 CSF U/mL 17292-4 Mumps virus Ab ACnc Pt CSF Qn

Mycobacterium avium complex rRNA 32 Any No Unit 20463-6 Mycobacterium avium complex rRNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium avium complex rRNA [Presence] in Unspecified specimen by Probe and target amplification method

Mycobacterium tuberculosis DNA 30 Any No Unit 38379-4 Mycobacterium tuberculosis complex DNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis complex DNA [Presence] in Unspecified specimen by Probe and target amplification method

Mycobacterium tuberculosis rRNA 31 Any No Unit 48174-7 Mycobacterium tuberculosis complex rRNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis complex rRNA [Presence] in Unspecified specimen by Probe and target amplification method

Mycoplasma genitalium DNA 25 Any No Unit 69935-5 Mycoplasma genitalium DNA Threshold Pt XXX Ord Probe.amp.tar Mycoplasma genitalium DNA [Presence] in Unspecified specimen by Probe and target amplification method

Mycoplasma IgA Ab 18 Blood/Serum No Unit 31515-0 Mycoplasma pneumoniae Ab.IgA ACnc Pt Ser Ord

Mycoplasma IgG Ab For qualitative reporting 18 Blood/Serum No Unit 46198-8 Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Ord

Mycoplasma IgG Ab For quantitative reporting in titres 19 Blood/Serum titre 22426-1 Mycoplasma pneumoniae Ab.IgG Titr Pt Ser Qn

Mycoplasma IgG Ab For quantitative reporting in units/mL 19 Blood/Serum U/mL 7970-7 Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Qn

Mycoplasma IgM Ab 18 Blood/Serum No Unit 21406-4 Mycoplasma pneumoniae Ab.IgM ACnc Pt Ser Ord

Mycoplasma pneumoniae DNA 25 Any No Unit 29257-3 Mycoplasma pneumoniae DNA ACnc Pt XXX Ord Probe.amp.tar Mycoplasma pneumoniae DNA [Presence] in Unspecified specimen by Probe and target amplification method

Mycoplasma Total Ab 19 Blood/Serum titre 22425-3 Mycoplasma pneumoniae Ab Titr Pt Ser Qn

Neisseria gonorrhoeae DNA 25 Any No Unit 24111-7 Neisseria gonorrhoeae DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria gonorrhoeae DNA [Presence] in Unspecified specimen by Probe and target amplification method

Neisseria gonorrhoeae RNA 25 Any No Unit 43305-2 Neisseria gonorrhoeae rRNA ACnc Pt XXX Ord Probe.amp.tar Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by Probe and target amplification method

Neisseria meningitidis DNA 26 Any No Unit 49671-1 Neisseria meningitidis DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria meningitidis DNA [Presence] in Unspecified specimen by Probe and target amplification method

Neisseria meningitidis serogroup DNA 36 Any No Unit 71788-4 Neisseria meningitidis serogroup DNA Prid Pt XXX Nom Probe.amp.tar Neisseria meningitidis serogroup DNA [Identifier] in Unspecified specimen by Probe and target amplification method

O.tsutsugamushi Scrub Typhus total Ab 37 Blood/Serum titre 22485-7 Orientia tsutsugamushi Ab Titr Pt Ser Qn

Parvovirus B19 DNA 18 Any No Unit 9571-1 Parvovirus B19 DNA ACnc Pt XXX Ord Probe.amp.tar Parvovirus B19 DNA [Presence] in Unspecified specimen by Probe and target amplification method

Parvovirus IgG Ab 19 Blood/Serum titre 25630-5 Parvovirus B19 Ab.IgG Titr Pt Ser Qn

Parvovirus IgG Ab For qualitative reporting 19 Blood/Serum No Unit 29675-6 Parvovirus B19 Ab.IgG ACnc Pt Ser Ord

Parvovirus IgM Ab 20 Blood/Serum titre 25631-3 Parvovirus B19 Ab.IgM Titr Pt Ser Qn

Parvovirus IgM Ab For qualitative reporting 20 Blood/Serum No Unit 7981-4 Parvovirus B19 Ab.IgM ACnc Pt Ser Ord

Pneumocystis jiroveci DNA For qualitative reporting 25 Any No Unit 6521-9 Pneumocystis jiroveci DNA ACnc Pt XXX Ord Probe.amp.tar Pneumocystis jiroveci DNA [Presence] in Unspecified specimen by Probe and target amplification method

Pneumocystis jiroveci DNA For quantitative reporting with copies/mL 25 Any copies/mL 49441-9 Pneumocystis jiroveci DNA NCnc Pt XXX Qn Probe.amp.tar Pneumocystis jiroveci DNA [#/volume] in Unspecified specimen by Probe and target amplification method

Q fever DNA Coxiella burnetii 11 Any No Unit 23024-3 Coxiella burnetii DNA ACnc Pt XXX Ord Probe.amp.tar Coxiella burnetii DNA [Presence] in Unspecified specimen by Probe and target amplification method

Q fever IgG Ab For quantitative reporting in units/mL 15 Blood/Serum U/mL 16677-7 Coxiella burnetii Ab.IgG ACnc Pt Ser Qn

Q fever IgG Ab For quantitative reporting in titres 15 Blood/Serum titre 25335-1 Coxiella burnetii Ab.IgG Titr Pt Ser Qn

Page 6 of 8


Q fever IgG Ab For qualitative reporting 16 Blood/Serum No Unit 30212-5 Coxiella burnetii Ab.IgG ACnc Pt Ser Ord

Q fever IgM Ab For quantitative reporting in units/mL 16 Blood/Serum U/mL 16678-5 Coxiella burnetii Ab.IgM ACnc Pt Ser Qn

Q fever IgM Ab For quantitative reporting in titres 16 Blood/Serum titre 25336-9 Coxiella burnetii Ab.IgM Titr Pt Ser Qn

Q fever IgM Ab For qualitative reporting 16 Blood/Serum No Unit 30213-3 Coxiella burnetii Ab.IgM ACnc Pt Ser Ord

Q fever Phase 1 IgA Ab 22 Blood/Serum titre 9706-3 Coxiella burnetii phase 1 Ab.IgA Titr Pt Ser Qn

Q fever Phase 1 IgG Ab 22 Blood/Serum titre 9708-9 Coxiella burnetii phase 1 Ab.IgG Titr Pt Ser Qn

Q fever Phase 1 IgM Ab 22 Blood/Serum titre 9710-5 Coxiella burnetii phase 1 Ab.IgM Titr Pt Ser Qn

Q fever Phase 1 Total 21 Blood/Serum titre 43050-4 Coxiella burnetii phase 1 Ab Titr Pt Ser Qn

Q fever Phase 2 IgA Ab 22 Blood/Serum titre 9707-1 Coxiella burnetii phase 2 Ab.IgA Titr Pt Ser Qn

Q fever Phase 2 IgG Ab 22 Blood/Serum titre 9709-7 Coxiella burnetii phase 2 Ab.IgG Titr Pt Ser Qn

Q fever Phase 2 IgM Ab 22 Blood/Serum titre 9711-3 Coxiella burnetii phase 2 Ab.IgM Titr Pt Ser Qn

Q fever Phase 2 Total 21 Blood/Serum titre 38389-3 Coxiella burnetii phase 2 Ab Titr Pt Ser Qn

Q fever Total Ab 16 Blood/Serum titre 22211-7 Coxiella burnetii Ab Titr Pt Ser Qn

Q fever Total Ab For qualitative reporting 16 Blood/Serum No Unit 23020-1 Coxiella burnetii Ab ACnc Pt Ser Ord

Rickettsia australis Total Ab 29 Blood/Serum titre 29668-1 Rickettsia australis Ab Titr Pt Ser Qn

Rickettsia conorii IgG Ab 26 Blood/Serum titre 21492-4 Rickettsia conorii Ab.IgG Titr Pt Ser Qn

Rickettsia conorii IgM Ab 26 Blood/Serum titre 21493-2 Rickettsia conorii Ab.IgM Titr Pt Ser Qn

Rickettsia conorii Total Ab 28 Blood/Serum titre 29678-0 Rickettsia conorii Ab Titr Pt Ser Qn

Rickettsia prowazekii IgG Ab 28 Blood/Serum titre 25603-2 Rickettsia prowazekii Ab.IgG Titr Pt Ser Qn

Rickettsia prowazekii IgM Ab 28 Blood/Serum titre 25604-0 Rickettsia prowazekii Ab.IgM Titr Pt Ser Qn

Rickettsia prowazekii Total Ab 30 Blood/Serum titre 29682-2 Rickettsia prowazekii Ab Titr Pt Ser Qn

Rickettsia rickettsii Total Ab 31 Blood/Serum titre 29737-4 Rickettsia rickettsii Ab Titr Pt Ser Qn

Rickettsia typhi IgG Ab 23 Blood/Serum titre 22489-9 Rickettsia typhi Ab.IgG Titr Pt Ser Qn

Ross river virus RNA 20 Any No Unit XXXXX-X Ross river virus RNA ACnc Pt XXX Ord Probe.amp.tar Ross river virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

Rickettsia typhi IgM Ab 23 Blood/Serum titre 22490-7 Rickettsia typhi Ab.IgM Titr Pt Ser Qn

Rickettsia typhi Total Ab 25 Blood/Serum titre 29684-8 Rickettsia typhi Ab Titr Pt Ser Qn

Ross River virus IgG Ab 23 Blood/Serum No Unit 31614-1 Ross river virus Ab.IgG ACnc Pt Ser Ord

Ross River virus IgM Ab 23 Blood/Serum No Unit 31615-8 Ross river virus Ab.IgM ACnc Pt Ser Ord

Ross River virus Total Ab 25 Blood/Serum No Unit 26672-6 Ross river virus Ab ACnc Pt Ser Ord

Rotavirus Ag stool For qualitative reporting with agglutination assays 18 Stool No Unit 5879-2 Rotavirus Ag ACnc Pt Stool Ord Aggl Rotavirus Ag [Presence] in Stool by Agglutination

Rotavirus Ag stool For qualitative reporting with immuno assays 18 Stool 5880-0 Rotavirus Ag ACnc Pt Stool Ord EIA Rotavirus Ag [Presence] in Stool by Immunoassay

Rotavirus RNA 13 Any No Unit 62859-4 Rotavirus RNA ACnc Pt XXX Ord Probe.amp.tar Rotavirus RNA [Presence] in Unspecified specimen by Probe and target amplification method

RPR RPR 5 Blood/Serum No Unit 20507-0 Reagin Ab ACnc Pt Ser Ord RPR

RPR RPR 5 Blood/Serum titre 31147-2 Reagin Ab Titr Pt Ser Qn RPR

RSV Ag ICT For qualitative reporting with immunochromatographic test 10 Any No Unit 31950-9 Respiratory syncytial virus Ag ACnc Pt XXX Ord

RSV Ag IFA For qualitative reporting with immunofluorescence method 10 Any No Unit 5877-6 Respiratory syncytial virus Ag ACnc Pt XXX Ord IF

Rubella Ab IgG avidity 22 Blood/Serum % 52986-7 Rubella virus Ab.IgG avidity Ratio Pt Ser Qn EIA Rubella virus IgG Ab avidity [Ratio] in Serum by Immunoassay

Rubella IgG Ab For qualitative reporting 16 Blood/Serum No Unit 25514-1 Rubella virus Ab.IgG ACnc Pt Ser Ord

Rubella IgG Ab 17 Blood/Serum IU/mL 8014-3 Rubella virus Ab.IgG ACnc Pt Ser Qn

Rubella IgM Ab 16 Blood/Serum No Unit 31616-6 Rubella virus Ab.IgM ACnc Pt Ser Ord

Rubella Total Ab 18 Blood/Serum No Unit 22496-4 Rubella virus Ab ACnc Pt Ser Ord

Salmonella paratyphi AH Ab 26 Blood/Serum titre 21511-1 Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl

Salmonella paratyphi AO Ab 26 Blood/Serum titre 33470-6 Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl

Salmonella paratyphi BH Ab 26 Blood/Serum titre 21513-7 Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl

Salmonella paratyphi BO Ab 26 Blood/Serum titre 27938-0 Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl

Salmonella typhi H Ab 21 Blood/Serum titre 34371-5 Salmonella typhi H Ab Titr Pt Ser Qn Aggl

Salmonella typhi O Ab 21 Blood/Serum titre 34372-3 Salmonella typhi O Ab Titr Pt Ser Qn Aggl

Schistosoma IgG Ab 20 Blood/Serum U/mL 13277-9 Schistosoma sp Ab.IgG ACnc Pt Ser Qn

Schistosoma IgG Ab 20 Blood/Serum No Unit 33317-9 Schistosoma sp Ab.IgG ACnc Pt Ser Ord

Schistosoma total Ab 20 Blood/Serum titre 34594-2 Schistosoma sp Ab Titr Pt Ser Qn

Sindbis virus total Ab 22 Blood/Serum titre 42954-8 Sindbis virus Ab Titr Pt Ser Qn

Spotted fever group IgG Ab 26 Blood/Serum titre 22477-4 Rickettsia spotted fever group Ab.IgG Titr Pt Ser Qn

Spotted fever group IgM Ab 27 Blood/Serum titre 22479-0 Rickettsia spotted fever group Ab.IgM Titr Pt Ser Qn

Spotted fever group total Ab 28 Blood/Serum titre 22475-8 Rickettsia spotted fever group Ab Titr Pt Ser Qn

Streptococcus AntiDNase B Ab 29 Blood/Serum titre 14207-5 DNAse B Ab.Streptococcal Titr Pt Ser Qn

Streptococcus AntiDNase B Ab 29 Blood/Serum U/mL 5133-4 DNAse B Ab.Streptococcal ACnc Pt Ser Qn

Streptococcus O Ab ASOT For quantitative reporting in units/mL 18 Blood/Serum IU/mL 5370-2 Streptolysin O Ab ACnc Pt Ser Qn

Streptococcus O Ab ASOT For qualitative reporting 18 Blood/Serum No Unit 9788-1 Streptolysin O Ab ACnc Pt Ser Ord

Streptococcus O Ab ASOT For quantitative reporting in titres 19 Blood/Serum titre 22568-0 Streptolysin O Ab Titr Pt Ser Qn

Toxoplasma gondii Ab IgG avidity 32 Blood/Serum % 56990-5 Toxoplasma gondii Ab.IgG avidity Ratio Pt Ser Qn EIA Toxoplasma gondii IgG Ab avidity [Ratio] in Serum by Immunoassay

Toxoplasma gondii IgA Ab 25 Blood/Serum U/mL 22578-9 Toxoplasma gondii Ab.IgA ACnc Pt Ser Qn

Toxoplasma gondii IgA Ab For qualitative reporting 25 Blood/Serum No Unit 33459-9 Toxoplasma gondii Ab.IgA ACnc Pt Ser Ord

Toxoplasma gondii IgG Ab 25 Blood/Serum No Unit 22580-5 Toxoplasma gondii Ab.IgG ACnc Pt Ser Ord

Toxoplasma gondii IgG Ab For quantitative reporting in titres 26 Blood/Serum titre 22582-1 Toxoplasma gondii Ab.IgG Titr Pt Ser Qn

Toxoplasma gondii IgG Ab For quantitative reporting in units/mL 26 Blood/Serum IU/mL 8039-0 Toxoplasma gondii Ab.IgG ACnc Pt Ser Qn

Toxoplasma gondii IgM Ab For qualitative reporting 25 Blood/Serum No Unit 25542-2 Toxoplasma gondii Ab.IgM ACnc Pt Ser Ord

Toxoplasma gondii IgM Ab 25 Blood/Serum U/mL 8040-8 Toxoplasma gondii Ab.IgM ACnc Pt Ser Qn

Treponema pallidum Ab All agglutination tests including TPHA 21 Blood/Serum No Unit 24312-1 Treponema pallidum Ab ACnc Pt Ser Ord Aggl

Treponema pallidum DNA 22 Any No Unit 41163-7 Treponema pallidum DNA ACnc Pt XXX Ord Probe.amp.tar Treponema pallidum DNA [Presence] in Unspecified specimen by Probe and target amplification method

Treponema pallidum FTA Ab 25 Blood/Serum No Unit 5393-4 Treponema pallidum Ab ACnc Pt Ser Ord IF

Treponema pallidum FTA IgM Ab 31 Blood/Serum No Unit 17729-5 Treponema pallidum Ab.IgM ACnc Pt Ser Ord IF

Treponema pallidum IgM Ab 27 Blood/Serum No Unit 6562-3 Treponema pallidum Ab.IgM ACnc Pt Ser Ord

Treponema pallidum immunoblot 30 Blood/Serum No Unit 57032-5 Treponema pallidum Ab ACnc Pt Ser Ord IB

Treponema pallidum Total Ab 29 Blood/Serum No Unit 22587-0 Treponema pallidum Ab ACnc Pt Ser Ord

Typhus group IgG Ab 19 Blood/Serum titre 22493-1 Rickettsia typhus group Ab.IgG Titr Pt Ser Qn

Typhus group IgM Ab 19 Blood/Serum titre 22494-9 Rickettsia typhus group Ab.IgM Titr Pt Ser Qn

Typhus group Total Ab 21 Blood/Serum titre 22492-3 Rickettsia typhus group Ab Titr Pt Ser Qn

Vancomycin resistance vanA gene Use for to test fro vancomycin resistant Enterococcus species 31 Any No Unit 48814-8 Bacterial vancomycin resistance (vanA) geneACnc Pt XXX Ord Probe.amp.tar Bacterial vancomycin resistance (vanA) gene [Presence] by Probe and target amplification method

Vancomycin resistance vanA, vanB genes Use for to test fro vancomycin resistant Enterococcus species 38 Any No Unit 62261-3 Bacterial vancomycin resistance (vanA, vanB) genesACnc Pt XXX Ord Probe.amp.tar Bacterial vancomycin resistance (vanA , vanB) genes [Presence] by Probe and target amplification method

Varicella Zoster IgG Ab For qualitative reporting 23 Blood/Serum No Unit 19162-7 Varicella zoster virus Ab.IgG ACnc Pt Ser Ord

Varicella Zoster IgG Ab For quantitative reporting in titres 25 Blood/Serum titre 22602-7 Varicella zoster virus Ab.IgG Titr Pt Ser Qn

Varicella Zoster IgG Ab For quantitative reporting in units/mL 25 Blood/Serum IU/mL 8047-3 Varicella zoster virus Ab.IgG ACnc Pt Ser Qn

Varicella Zoster IgM Ab For qualitative reporting 24 Blood/Serum No Unit 21597-0 Varicella zoster virus Ab.IgM ACnc Pt Ser Ord

Varicella Zoster IgM Ab 25 Blood/Serum titre 22606-8 Varicella zoster virus Ab.IgM Titr Pt Ser Qn

Varicella Zoster Total Ab For qualitative reporting 26 Blood/Serum No Unit 22600-1 Varicella zoster virus Ab ACnc Pt Ser Ord

Varicella Zoster Total Ab 28 Blood/Serum titre 21594-7 Varicella zoster virus Ab Titr Pt Ser Qn

Varicella zoster virus DNA 27 Any No Unit 11483-5 Varicella zoster virus DNA ACnc Pt XXX Ord Probe.amp.tar Varicella zoster virus DNA [Presence] in Unspecified specimen by Probe and target amplification method

Page 7 of 8


VDRL CSF VDRL 8 CSF titre 31146-4 Reagin Ab Titr Pt CSF Qn VDRL

VDRL CSF For qualitative reporting 8 CSF No Unit 5290-2 Reagin Ab ACnc Pt CSF Ord VDRL

West Nile virus RNA 19 Any No Unit 34892-0 West Nile virus RNA ACnc Pt XXX Ord Probe.amp.tar West Nile virus RNA [Presence] in Unspecified specimen by Probe and target amplification method

West Nile virus Total Ab 24 Blood/Serum titre 41225-4 West Nile virus Ab Titr Pt Ser Qn

Yellow fever virus total Ab 27 Blood/Serum titre 22618-3 Yellow fever virus Ab Titr Pt Ser Qn

Yellow fever virus RNA 23 Blood/Serum No Unit 8057-2 Yellow fever virus RNA ACnc Pt Ser Ord Probe.amp.tar Yellow fever virus RNA [Presence] in Serum by Probe and target amplification method

Yellow fever virus IgG Ab 25 Blood/Serum U/mL 8055-6 Yellow fever virus Ab.IgG ACnc Pt Ser Qn

Yellow fever virus IgM Ab 25 Blood/Serum U/mL 8056-4 Yellow fever virus Ab.IgM ACnc Pt Ser Qn

Page 8 of 8

Terminology for Microbiology: Organisms mapped to SNOMED CT



1.0 Initial Terminology for Microbiology: Organisms mapped to SNOMED CT, published by the

RCPA Pathology Units and Terminology Standardisation Project.

Michael Legg / Dr Christiaan

Swanepoel

12-Feb-13


Changed filename from "PUTS Microbiology Subset of Organisms mapped to Snomed CT " to

"APUTS Microbiology Subset of Organisms mapped to Snomed CT ".

Removed columns that were used during reviewing the SNOMED codes.

Removed duplicate Grimontia hollisae SNOMED: 433669003 | Grimontia hollisae |.

Corrected all organisms in upper case to the standardised organism format.

Changed column title from "Source Organism names provided by working group members"

to "Preferred Organism name"

After public feedback and approval by PITUS steering committee the following changes were

made:

- Correct spelling for Salmonella bongori, it now is Salmonella Bongori .

- Changed SNOMED code for Bacteroides corrodens to 450602004 | Campylobacter

ureolyticus | (was 36392001 | Bacteroides ureolyticus | )

- Changed SNOMED code for Cryptococcus gatti (C.neoformans var gatti) to 450862004 |

cryptococcus gattii | (was 243467007 | Cryptococcus neoformans var gattii |)

- Changed SNOMED code for Legionella bozemanii to 450611004 | Legionella bozemanae

| (was 113719008 | Fluoribacter bozemanae |)

- Changed SNOMED code for Peptostreptococcus productus to 698205008 | Blautia

producta | (was 113946007 | Ruminococcus productus |)

- Changed SNOMED code for Rhinovirus to 1838001 | human rhinovirus | (was 90389005

| Genus Rhinovirus |)

- The SNOMED code for Neisseria meningitidis group D was removed, as it is marked as

an erroneous code. A submission will be made for a new SNOMED code.

- Changed SNOMED code for Coronavirus to 84101006 | human coronavirus | (was

243608008 | Coronavirus |).

- Changed the preferred name for any organism where 'Virus' was in the name, it is now

'virus'.

- Added Measles virus.

Please note: The PITUS steering committee held a meeting on 9 October 2014 and decided

to keep the preferred name as 'Streptococcus downei ', and not change it to 'Streptococcus

dolonei'.


2.1 30-Oct-14Donna Moore

australian pathology units and terminology

Documents