9th international symposium on wild boar and others suids, hannover 2012 factors influencing wild...

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9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability modelling approach Kevin Morelle Lejeune Philipppe

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Page 1: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

9th International Symposium on Wild Boar and others Suids, Hannover 2012

Factors influencing wild boar presence

in agricultural landscape: a habitat

suitability modelling approachKevin Morelle

Lejeune Philipppe

Page 2: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Wild boar (Sus scrofa) populations have increased worldwide

In parallel, distribution of the species has enlarged, out of forest habitat → plasticity of the species can explain partly the phenomenon

Ability to make « home range shift » [Keuling et al. 2009]

Consequently, agricultural areas have become new « home » for wild boar, providing cover and food

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 3: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Cultural cycle offers cover all over the year for wild boar

Page 4: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Why modelling distribution?

Habitat management policy [Park at al. 2003]

Conservation planning [Park at al. 2003]

Species invasion [Evangelista et al. 2008]

Forecast distribution (climate change…)

Risk mapping - damage [Saito et al. 2012]

- disease transmission [Nexton-Cross et al. 2007]

→ Give informations on environmental correlates influencing the patterns of distribution of a species

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 5: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Situation in Belgium

Page 6: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

What are main drivers of wild boar distribution in these agricultural landscape?

1 - identifying environmental variables that explain seasonal distribution of the species

2 - defining habitat suitability map in agricultural landscape

3 - extrapolate the best model to the north of Wallonia

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 7: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

We used Condroz as study site to buildour model

• agricultural area with patchily distributed forest • « recently » (10-30 y) colonized by wild boar

STUDY AREA

Page 8: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

2 « presence » datasets : agricultural damages & hunting records• covering same period (2009-2010)• differences within year (april-october vs. october-december)

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

DATASETS

Page 9: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Set of 18 predictors defining habitat, agricultural cover, topography and human presence

cell size of 300m (and landscape metrics) were derivated using R packages raster (Hijmans), SpatStat (Baddeley) and dismo.

Environmental predictors are represented as raster thematic layers.

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

PREDICTORS

Page 10: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

MaxEnt is a program for modelling species distribution from presence-only data→ minimizing the entropy between two probability density, presence & background

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

MODELING TECHNIQUE: MaxEnt [Phillips et al. 2006]

From Elith et al. (2011)

Page 11: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Training data: to fit the modelTest data : to evaluate the predictive ability of the model (20%)Background sample of 2000 points ~ # hunting/damage records

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

MODELING TECHNIQUE: MaxEnt [Phillips et al. 2006]

Model evaluation

receiver operating characteristic (ROC) - Area under curve (AUC)

→ measure of the prediction success

→ ROC curve is obtained by plotting all true positive values (sensitivity fraction) against their equivalent false positive values (1-specificity fraction)

Page 12: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Hunting data

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 13: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Hunting data

Response curve of distance to forest variables

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 14: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Damage data

Response curve

Page 15: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Damage data - Response curves

Habitat

Cover fields

Potato fields

Road density

Page 16: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Both dataset

Page 17: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Both dataset

Response curves

Road density

Distance to forest

Page 18: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model evaluation

Classical – ROC curve analysis

AUC

Page 19: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

Page 20: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

Comparison with known presence of wild boar

Page 21: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection« Hunting model »

« Damage model »

Page 22: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection« Both model »

« Damage model »

Page 23: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

How to fix a probability threshold to create a presence/absence map?

→ Theoritically: maximizing sensitivity while minimizing specificity [Philips 2006]

Page 24: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

How to fix a probability threshold to create a presence/absence map?

→ BUT to conservative approach! (175 km² of predicted area vs. already 250 km² of presence area)

Page 25: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

How to fix a probability threshold to create a presence/absence map?

→ BUT to conservative approach! (175 km² of predicted area vs. already 250 km² of presence area)

0

400

800

1200

1600

2000

0,1 0,2 0,3 0,4 0,5

threshold value

pred

icte

d ar

ea (k

m²)

0%

20%

40%

60%

80%

100%

over

lap

true

pre

senc

e

damage_km hunting_km both_km damage_pc hunting_pc both_pc

Page 26: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

Current species range could increase up to 535 km² if wild boar occupies all the areas predicted as suitable by the MaxEnt model

Page 27: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

Current species range could increase up to 1116 km² if wild boar occupies all the areas predicted as suitable by the MaxEnt model

Page 28: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Model projection

Current species range could increase up to 879 km² if wild boar occupies all the areas predicted as suitable by the MaxEnt model

35 km

Page 29: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Factors’ analysis

Distribution model show differences in environmental covariates between

→ autumn/winter: decrease in cover/food in agricultural plain + acorn

availability: switch to forest habitat after crop harvesting

→ spring/summer: intensive use of fields providing cover & food

BUT…reliability of presence model for a highly mobile species? How to take into account movement ability of the wild boar?

Model prediction/projection

Prediction show that range could increase into suitable clustered patches

→ now hunting pressure is high and maintain population low, but …?

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 30: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

ReferencesEvangelista, P. H., S. Kumar, T. J. Stohlgren, C. S. Jarnevich, A. W. Crall, J. B. Norman Iii, and D. T. Barnett. 2008. Modelling invasion for a habitat generalist and a specialist plant species. Diversity and Distributions 14:808-817.

Mateo-Tomás, P. and P. P. Olea. 2010. Anticipating Knowledge to Inform Species Management: Predicting Spatially Explicit Habitat Suitability of a Colonial Vulture Spreading Its Range. PLoS ONE 5:e12374.

Newton-Cross, G., P. C. L. White, and S. Harris. 2007. Modelling the distribution of badgers Meles meles: comparing predictions from field-based and remotely derived habitat data. Mammal Review 37:54-70.

Park, C.-R. and W.-S. Lee. 2003. Development of a GIS-based habitat suitability model for wild boar Sus scrofa in the Mt. Baekwoonsan region, Korea. Mammal Study 28:17-21.

Phillips, S. J., R. P. Anderson, and R. E. Schapire. 2006. Maximum entropy modeling of species geographic distributions. Ecological Modelling 190:231-259.

Saito, M., H. Momose, T. Mihira, and S. Uematsu. 2012. Predicting the risk of wild boar damage to rice paddies using presence-only data in chiba prefecture, Japan. International Journal of Pest Management 58:65-71.

DISCUSSIONRESULTSMETHODOBJECTIVESCONTEXT

Page 31: 9th International Symposium on Wild Boar and others Suids, Hannover 2012 Factors influencing wild boar presence in agricultural landscape: a habitat suitability

Thank you for your attention

P. Taymans