vivo: vision for research information, 2020 brussels, september 10, 2012 michael conlon, phd
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VIVO: Vision for Research Information, 2020 Brussels, September 10, 2012 Michael Conlon, PhD Clinical and Translational Science Institute University of Florida. Learned a field, learned the scientific method, did science. Research Process 1972. Science and Scientists. - PowerPoint PPT PresentationTRANSCRIPT
VIVO: Vision for Research Information, 2020Brussels, September 10, 2012
Michael Conlon, PhDClinical and Translational Science Institute
University of Florida
Learned a field, learned the scientific method, did
science
Research Process 1972
Hypothesis
Experiment
Publication
Science and Scientists
Research Process 2012Hypothes
is
Consults
Assemble Team
Write proposal
Get Funded
Create Virtual Organi-zation
Augment Data
Systems
Conduct Experi-ments
Publish results
Archive data
Six Trends
1. Rise of the small
2. Increasing volume of science
PubMed new publications per year
The Problems Got Hard
3. Increasing complexity of scientific problems
Data Got Big (IDR Slide)
4. Data reuse grows
Lots of Competitors
2011 Shanghai ranking of world universities http://en.wikipedia.org/wiki/Academic_Ranking_of_World_Universities
5. Competition rises
6. Internet disintermediation of science continues
How can we know what is going on,
build teams, solve data-driven
problems?
Research Discovery
ResearchDiscovery
… And the connections between them
VIVO: Data, Tools and Community
Simple tools for presentation, traversal,
search
processOrg<-function(uri){ x<-xmlParse(uri) u<-NULL name<-xmlValue(getNodeSet(x,"//rdfs:label")[[1]]) subs<-getNodeSet(x,"//j.1:hasSubOrganization") if(length(subs)==0) list(name=name,subs=NULL) else { for(i in 1:length(subs)){ sub.uri<-getURI(xmlAttrs(subs[[i]])["resource"]) u<-c(u,processOrg(sub.uri)) } list(name=name,subs=u) }}
VIVO produces both HTML and RDF
Software reads VIVO RDF and displays
Ontology Process
Community
ScienceMap. Examine collections of publications for individuals, work groups, institutions
Augmenting data
VIVO Searchlight
Mentoring
4th Annual VIVO ConferenceAugust 14-15, 2013St. Louis, Missouri, USAhttp://vivoweb.org/conference