research discovery, social networks and vivo chicago, october 8, 2012 michael conlon, phd
DESCRIPTION
Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD Clinical and Translational Science Institute University of Florida. Learned a field, learned the scientific method, did science. Research Process 1972. Science and Scientists. Research Process 2012. - PowerPoint PPT PresentationTRANSCRIPT
![Page 1: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/1.jpg)
Research Discovery, Social Networks and VIVO
Chicago, October 8, 2012
Michael Conlon, PhD
Clinical and Translational Science Institute
University of Florida
![Page 2: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/2.jpg)
Learned a field, learned the scientific method, did
science
![Page 3: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/3.jpg)
Research Process 1972
Hypothesis
Experiment
Publication
![Page 4: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/4.jpg)
Science and Scientists
![Page 5: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/5.jpg)
Research Process 2012
Hypothesis
Consults
Assemble Team
Write proposal
Get Funded
Create Virtual Organi-zation
Augment Data
Systems
Conduct Experi-ments
Publish results
Archive data
![Page 6: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/6.jpg)
Six Trends
![Page 7: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/7.jpg)
1. Rise of the small
![Page 8: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/8.jpg)
2. Increasing volume of science
PubMed new publications per year
![Page 9: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/9.jpg)
The Problems Got Hard
3. Increasing complexity of scientific problems
![Page 10: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/10.jpg)
Data Got Big (IDR Slide)
4. Data reuse grows
![Page 11: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/11.jpg)
Lots of Competitors
2011 Shanghai ranking of world universities http://en.wikipedia.org/wiki/Academic_Ranking_of_World_Universities
5. Competition rises
![Page 12: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/12.jpg)
6. Internet disintermediation of science continues
![Page 13: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/13.jpg)
How can we know what is going on,
build teams, solve data-driven
problems?
![Page 14: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/14.jpg)
Research Discovery
ResearchDiscovery
![Page 15: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/15.jpg)
… And the connections between them
![Page 16: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/16.jpg)
VIVO: Data, Tools and Community
![Page 17: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/17.jpg)
Simple tools for presentation, traversal,
search
![Page 18: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/18.jpg)
Ontology Process
![Page 19: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/19.jpg)
![Page 20: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/20.jpg)
ScienceMap. Examine collections of publications for individuals, work groups, institutions
![Page 21: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/21.jpg)
processOrg<-function(uri){ x<-xmlParse(uri) u<-NULL name<-xmlValue(getNodeSet(x,"//rdfs:label")[[1]]) subs<-getNodeSet(x,"//j.1:hasSubOrganization") if(length(subs)==0) list(name=name,subs=NULL) else { for(i in 1:length(subs)){ sub.uri<-getURI(xmlAttrs(subs[[i]])["resource"]) u<-c(u,processOrg(sub.uri)) } list(name=name,subs=u) }}
VIVO produces both HTML and RDF
Software reads VIVO RDF and displays
![Page 22: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/22.jpg)
2008
2012
Main Component: what changes have occurred between 2008 and 2012?• In 2008 the network is split into two groups of approximately the same size – CTSI/HSC versus everything
else• In 2012 the network consists of one big connected region, with the CTSI acting as a broker between several
more marginal subgroups• In 2012 more of the authors with the highest number of publications are under the CTSI umbrella (note that
2012 publications data are incomplete)
Co-Author Network
• Data source: Thomson Reuters via UF VIVO• Each node represents one author• Nodes are sized by Total Publications and linked by a common VIVO publication URI
Chris McCarty, Assoc. Prof. & Raffaele Vacca
![Page 23: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/23.jpg)
Co-Funded Network2008
2012
Main Component: what changes have occurred between 2008 and 2012?• More of Health Science Center comes under the CTSI umbrella• The CTSI has a broader reach in the whole network• Increasingly the CTSI incorporates all researchers in relevant areas (areas not relevant to
CTSI research fields naturally remain out of its network)
Chris McCarty, Assoc. Prof. & Raffaele Vacca
• Data source: UF Division of Sponsored Research (DSR) database• Each node represents one Contract PI, Project PI or Co-PI linked by a common PeopleSoft Contract number• Nodes are sized by Total Awarded in UF fiscal year (July-June)
![Page 24: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/24.jpg)
![Page 25: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/25.jpg)
Augmenting data
![Page 26: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/26.jpg)
VIVO Searchlight
![Page 27: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/27.jpg)
Collaboration and Coordination• At UF – Libraries, CTSI, AHC IT, Office of Research, Enterprise Systems,
Registrar, Business Services• Federal – OSTP, NIH, NLM, NSF, USDA, EPA, FDA, NASA, FDP, …• Partners -- Symplectic, Pivot, Elsevier, Thomson-Reuters, ORCID,
CiteSeer, CrossRef, OCLC, DuraSpace, CNI, Total-Impact, …• Ontology– EuroCRIS, CASRAI, NCBO, Eagle-I, CTSAconnect, …• Professional Societies – APA, AAAS, AIRI, AAMC, ABRF, …• International – Australia, China, Netherlands, UK, Canada, Brazil, …• Semantic Web community – DERI, Tim Berners-Lee, MyExperiment,
Concept Web Alliance, Open Pharma Space (EU), Linked Data, …• Social Network Analysis Community – Northwestern, Davis, UCF, …• Universities -- Melbourne, Duke, Penn, Colorado, Eindhoven, Pittsburgh,
Leicester, Cambridge, Stony Brook, Weill, Indiana, Scripps, Washington U, Ponce, Northwestern, Iowa, Harvard, UCSF, Florida, Stanford, MIT, Brown, Johns Hopkins, OHSU, Minnesota, and the CTSA consortium
• Application and service providers – over 100• Software downloads (over 30,000) and contact list (over 1,600)
![Page 28: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/28.jpg)
Community
![Page 29: Research Discovery, Social Networks and VIVO Chicago, October 8, 2012 Michael Conlon, PhD](https://reader033.vdocuments.site/reader033/viewer/2022051401/56814969550346895db6bec5/html5/thumbnails/29.jpg)
4th Annual VIVO ConferenceAugust 14-15, 2013St. Louis, Missouri, USAhttp://vivoweb.org/conference