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UNIVERSITY COLLEGE DUBLIN DUBLIN CITY UNIVERSITY TYNDALL NATIONAL INSTITUTE Utilising the Ubiquity of the Cell Phone to Record Physiological Activities Aiden Doherty Mentor: Kristin Tolle External Research, Microsoft Research & CLARITY: Centre for Sensor Web Technologies, Dublin, Ireland

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Page 1: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Utilising the Ubiquity of the Cell Phone to Record Physiological 

Activities

Aiden DohertyMentor: Kristin Tolle

External Research, Microsoft Research&

CLARITY: Centre for Sensor Web Technologies, Dublin, Ireland

Page 2: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Overview

• BACKGROUND• Cell Phone Ubiquity• Lifelogging

• CELL PHONE DATA LOGGER• A Cell Phone Data Logging Framework

• MY PHYSIOLOGICAL DIARY• Reviewing Physiological Data Using Contextual Information

• ONGOING WORK

Page 3: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

CLARITYPrincipal Investigators

Prof. Barry Smyth - Personalization, recommender systems, mobile computingProf. Alan Smeaton - Content-based information retrievalProf. Dermot Diamond - Materials research, wearable sensorsProf. Noel O’Connor - Audio-visual analysis, multi-modal information processingMr. Gregory O’Hare - Ubiquitous computing, multi-agent systems

Principal Investigators Principal Investigators Principal Investigators

Prof. Paddy Nixon - Pervasive computing, middleware, security, trust, privacyProf. Niall Moyna - Sports Science, wearable sensingDr. Simon Dobson - Middleware, pervasive computingDr. Cian O’Mathuna - Sensor devices, energy-aware hardwareDr. Brian Caulfield - Physiotherapy, therapeutic gaming, wearable sensors

Associate PIs

Prof. Paddy Nixon - Pervasive computing, middleware, security, trust, privacyProf. Niall Moyna - Sports Science, wearable sensingDr. Simon Dobson - Middleware, pervasive computingDr. Cian O’Mathuna - Sensor devices, energy-aware hardwareDr. Brian Caulfield - Physiotherapy, therapeutic gaming, wearable sensors

•$21.4M over 5 years ($15.4M from Irish government, $6M from industry)•84 researchers (28 academics, 31 post-docs, 25 PhD students)•12 support staff

Quick Stats

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UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

CLARITY

CLARITY What ? “The Sensor Web”– Increasing availability of cheap, robust, and deployable sensor technologies ushering in a wave of new information sources;

– Ubiquitous, dynamic, noisy, reactive and yielding unstructured data‐streams == sensor web

– Realizing the sensor web demands a large‐scale, multi‐disciplinary research effort == CLARITY

– Moving beyond our research silos to novel research interactions;

– Demonstrator projects in:Personal health and wellness;

Environmental monitoring;

Page 5: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Cell phone ubiquity

Source: http://www.dialaphone.co.uk/blog/?p=1485

-4 billion Cell Phones in World

-Approx 1bn PCs

- Almost 70% of new cell phone subscriptionscome from developing nations (Source: International Telecommunications Union)

- Bluetooth is now standard on most cell phones

Page 6: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

RPF on Cellphone as Platform for Healthcare• 14 universities supported

• Cell phones can provide people with access to technology‐based healthcare solutions

•Who otherwise would have no such opportunities

Page 7: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

How often do you visit your Doctor?

Visits to Dr.

My Life

Page 8: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE  8

Lifelogging

Lifelogging is about digitally recording your daily life

Sometimes its for a reason Work e.g. security personnel, medical staff, etc.Personal e.g. diaries, etc.

Sometimes its for posterityRecording vacations, family gatherings, social occasions

Sometimes its because we canAnd we’re not yet sure what we’ll do with it e.g. MyLifeBits

Page 9: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE  9

Lifelogging DevicesMuch past research focus on miniaturising hardware and increasing battery‐life + storage e.g. visual lifelogging domain

Tano et. al. University of Electro-Communications, Tokyo, Japan Microsoft Research SenseCam

Steve Mann. Wearable computing: a first step toward personal imaging. Computer, 30:25–32, Feb 1997.

TIMELINETIMELINE

Page 10: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Aims of this project

• Utilise cell phone ubiquity• Logging platform on Windows Mobile devices

• Framework allows easy integration of new BT sensors

• Reviewing physiological values• Interface to monitor, analyse & browse through huge 

volumes of sensor data

• “Individualise” medical baselines

Page 11: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Overview

• BACKGROUND• Cell Phone Ubiquity• Lifelogging

• CELL PHONE DATA LOGGER• A Cell Phone Data Logging Framework

• MY PHYSIOLOGICAL DIARY• Reviewing Physiological Data Using Contextual Information

• ONGOING WORK

Page 12: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

SmartLogger Overview

XML

Cellular Wi‐FiLAN

ActiveSync…

Data Store

Body Temperature

Images

Heart Rate

Location

Page 13: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Easily include new sensors

Sleep apnea neck cuff with oximeter, accelerometer, microphone, & gsr sensors

Zephyr HxM: An example of a modern biometric sensor sending out BT readings

Body Temperature

Images

Heart Rate

Location

XML

Page 14: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Data Logger Summary

• .NET Windows Mobile

• Easy to incorporate additional Bluetooth sensors

• Has to deal with incomplete and heterogeneous data

Page 15: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Overview

• BACKGROUND• Cell Phone Ubiquity• Lifelogging

• CELL PHONE DATA LOGGER• A Cell Phone Data Logging Framework

• MY PHYSIOLOGICAL DIARY• Reviewing Physiological Data Using Contextual Information

• ONGOING WORK

Page 16: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

How to review lots of data?

Physiological data:

Little emphasis on visualisation

IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, VOL. 8, NO. 4, DECEMBER 2004 439A Wireless PDA-Based Physiological Monitoring System for Patient TransportYuan-Hsiang Lin, I-Chien Jan, Patrick Chow-In Ko, Yen-Yu Chen, Jau-Min Wong, and Gwo-Jen Jan

Page 17: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Simple view of Human Memory

•SENSORY

•SHORT – TERM

•LONG – TERM–PROCEDURAL–DECLARATIVE

• Semantic

• EPISODIC/ AUTOBIOGRAPHICAL

Page 18: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Cued Recall & Visual Encoding

•“Cued Recall” better than “Free Recall” (Purdy, ’01)

•Memories can be temporally encoded (Larsen, ’96)

•Distinct memories are more strongly encoded (Purdy, ’01)

•Memories stored by association (Baddeley, ’04)

Page 19: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Our Take…

To effectively help people understand their physiological data:

• Passively logged cell phone data gives potential “cues”

• Query data on “temporal” axes (calendar constraints)

• Highlightmore “distinctive” events (charts)

• “Associate” related events (location + images)

Page 20: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary

CONTEXTPANEL

CONTEXTPANEL

CHARTPANELCHARTPANEL

QUERYPANELQUERYPANEL

Page 21: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Location Context

Page 22: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Image Context

Page 23: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Compare across days/months/years

Page 24: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Display normalised values

Page 25: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Delve deeper into data

Page 26: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

My Physiological Diary:Adaptively query based on time

Page 27: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Result – OpenSource

• Allows sensor device researchers concentrate on the their hardware/chemistry/physics strengths

• Will allow machine learning researchers easily aggregate data to apply their techniques

• Will allow health conscious individuals more easily make sense of the data they’ve been collecting

Page 28: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Overview

• BACKGROUND• Cell Phone Ubiquity• Lifelogging

• CELL PHONE DATA LOGGER• A Cell Phone Data Logging Framework

• MY PHYSIOLOGICAL DIARY• Reviewing Physiological Data Using Contextual Information

• ONGOING WORK

Page 29: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Use Case – Sleep Apnea

• 12 million people in USA have sleep apnea

• Process of diagnosis can involve going to “sleep lab”

• In preliminary discussions with Sleep Disorders Center in UW Medical School

Sleep apnea neck cuff with oximeter, accelerometer, microphone, & gsr sensors

Page 30: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Future challenge – Security

XML

Cellular Wi‐FiLAN

ActiveSync…

Data Store

Body Temperature

Images

Heart Rate

Location

Page 31: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Future – Health Vault

XML

Cellular Wi‐FiLAN

ActiveSync…

Data Store

Body Temperature

Images

Heart Rate

Location

Page 32: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Future – Symptom detection

XML

Cellular Wi‐FiLAN

ActiveSync…

Data Store

Body Temperature

Images

Location

Heart Rate

Hey it looks like you’re writing a letter!!!

Hey it looks like you’re writing a letter!!!Only kidding !!!Only kidding !!!

You appear to be showing some symptoms of sleep 

aponea

You appear to be showing some symptoms of sleep 

aponea

Page 33: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Dublin SenseCam Work

ActivityRecognition

27 “concepts”

Outputs manually judged on ~95k images (5 users)

Page 34: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

steeringWheeleating

insideVehicle

vehiclesExternalreading holdingPhone

-1.5

-0.5

0.5

1.5

2.5

3.5

user 1 user 2 user 3 user 4 user 5

stan

dard

dev

iatio

ns a

way

from

sam

ple

mea

n

steeringWheel

eating

insideVehicle

vehiclesExternal

reading

holdingPhone

Comparison of Lifestyle Within Social Groups

Page 35: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Future – Zigbee

XML

Cellular Wi‐FiLAN

ActiveSync…

Data Store

Body Temperature

Images

Heart Rate

Location

Page 36: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Conclusions•Utilising cell phone ubiquity

• Logging platform on Windows Mobile devices• Framework allows easy integration of new BT

sensors

•Reviewing physiological values• Interface to monitor, analyse & browse through

huge volumes of sensor data• “Individualise” medical baselines

•Lot’s of exciting future directions!!!

Page 37: Utilising the Ubiquity of the Cell Phone to Record Physiologicaldoras.dcu.ie/15058/1/Aiden_Doherty_CLARITY_Dublin.pdfRecording vacations, family gatherings, social occasions Sometimes

UNIVERSITY COLLEGE DUBLIN    DUBLIN CITY UNIVERSITY    TYNDALL NATIONAL INSTITUTE 

Thank YouSpecial thanks to Kristin Tolle, Tim Chou, Mike Sinclair, Kristin Lauter, Eric 

Horvitz, Roger Barga, and Jim Gemmell.

further information:http://www.cdvp.dcu.ie/SenseCam