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Three dimensional modelling of hydrodynamics and dissolved oxygen in Lake Erie using ELCOM- CAEDYM Luis F. Leon, Bob Hecky, Ralph Smith, Stephanie Guildford, Kevin Lamb (U. Waterloo) Jose Romero, Jason Antenucci (U. West. Australia)

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Page 1: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Three dimensional modelling of hydrodynamics and dissolved oxygen

in Lake Erie using ELCOM-CAEDYM

Luis F. Leon, Bob Hecky, Ralph Smith, Stephanie Guildford, Kevin Lamb (U. Waterloo)Jose Romero, Jason Antenucci (U. West. Australia)

Page 2: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

CAEDYM (Computational Aquatic Ecosystem Dynamics Model)

• designed to be linked to hydrodynamic models...

– ELCOM as the 3D hydrodynamic model driving CAEDYM,– model includes comprehensive process representation of the C, N, P, Si and DO cycles,– several size classes of inorganic suspended solids, and phytoplankton dynamics,– operates on any sub-daily time step to resolve algal processes (diurnal photosynthesis and nocturnal respiration),– generally runs at the same time interval as the hydrodynamic model.

Developed, supported, and distributed by Centre for Water Research, University of Western Australia

Page 3: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

‘Dead Zone’ in Lake Erie...

Source: US EPA http://www.epa.gov/glnpo/glindicators/water/oxygenb.html

Page 4: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Initial Testing: 1994• Including main tributaries and tracers setup...

– river tracers (flow weighted)– area tracers (i.e. basin exchanges)

TP Loads (concentrations)

Next step: Setup initial conditions & output sites…

With assistance and collaboration of Dave Schwab (GLERL) and Dave Dolan (UWGB).

Page 5: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Sampling Sites...

Page 6: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Initial Conditions...Average values for post-invasion years (1989-1993) in SpringParameter Unit West Central East

TP µgP/l 20.3 10.7 10.3SRP µgP/l 2.8 2.8 4.6NO3 mgN/l 0.8 0.28 0.28TKN mgN/l 0.18 0.16 0.14NH3 µgN/l 34.9 6.6 4.3

Silicate mg/l 1.4 0.4 0.7Chla µg/l 4.1 3.8 1.3

• IC (constant values by basin)

• IC (spatial variation)

Source: Makarewicz et al. 2000 JGLR 26:82

Source: Cruise values from NWRI Star Database

Page 7: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Config & Datablock Output...

Sheets:Surface Layer

Vertical Averages

Bottom Layer

Curtains:Longitudinal

West-Central

Central-East

Profiles:Profile (6 sites)

Profile WQ (27 sites)

TS @ 3m depth

TS@ -3m

Page 8: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Schematic of oxygen cycle in CAEDYM

Page 9: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Results (Animations)...

1994_85d_Erie_5sht.movSheets: Average5 Parameters (i.e. Temp, DO, TP, TN & Chla)

1994_85d_Erie_3Params.movSheets: Average & Curtains: Longitudinal

3 Parameters (i.e. Temp, DO & TP)

1994_85d_Erie_TEMPsvb.mov1994_85d_Erie_DOsvb.mov

Sheets: Surface, Average & Bottom

Individual Parameters (i.e. Temp & DO)

1994_85d_Erie_Temp.mov1994_85d_Erie_DO.mov

Sheet: Average & Curtain: Longitudinal

Individual Parameters (i.e. Temp & DO)

MoviesDescriptionOutput

Simulation Details:Starting Date: 12-May-1994 Time Step: 900s 8,160 iterations (85 days) Running Time: 27hrs Ratio: 80 (with CAEDYM, 350 ELCOM only)

Page 10: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Results (Profiles)...

Page 11: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Verification (DO spatial)...

Page 12: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Verification (DO profiles)...MSN 879 (23,151) : Sound Depth 62.5 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

MSN 940 (29,154) : Sound Depth 44 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

MSN 880 (57-77) : Sound Depth 25 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

MSN 965 (79-42) : Sound Depth 13 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

MSN 972 (58_15) : Sound Depth 8 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

MSN 968 (66_32) : Sound Depth 10 m

0

10

20

30

40

50

600 5 10 15

DO (mg/l)

Dep

th (m

)

West Central East

Page 13: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Verification (TP spatial)...

Page 14: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS - Main Variables...

Page 15: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS - Dissolved Oxygen...

Details…

Page 16: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Schematic of P cycle in CAEDYM

Page 17: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

P components (PO4)...

Back…

Page 18: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

P components (POP)...

Back…

Page 19: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

P components (DOP)...

Back…

Page 20: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS - Nitrogen...

Details…

Details…

Details…

Details…

Page 21: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS – Phytoplankton (Cryptophytes & Diatoms)...Details…

Page 22: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS – Phytoplankton (Cyanobacteria & Nodularia)...

Page 23: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Next steps...

• Fine tune parameters, initial data and loads...– Revise algal group parameterization (done)– Gather Grand River daily flows (done).– Extend simulation to October (done)

• Additional setup for...– 2002 (loading and cruise data). LETS– 2004 & eventually 2005.– Detailed (higher resolution) nearshore East Basin.

Page 24: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

N components (NO3)...

Back…

Page 25: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

N components (NH4)...

Back…

Page 26: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

N components (DON)...

Back…

Page 27: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

N components (PON)...

Back…

Page 28: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Phytoplankton TS-Output...

Back…

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Page 29: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Objectives...

• Learn how to use the coupled ELCOM-CAEDYM & preliminary setup-testing in Lake Erie...

– Program setup for version 2.2 and running executables.– Input file generation (loads and initial conditions, output definition, parameter configuration file, etc.).– Output transformation to netCD files (web and in-house scripts).– CWR Modeler as a quick output browser.– MatLab as the output visualization tool (plots, contours, time series, animations, etc.).

Page 30: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

TS - Phosphorus...

Details…

Details…

Details…

Page 31: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Main Processes...

Page 32: Three dimensional modelling of hydrodynamics and dissolved ...web2.uwindsor.ca/lemn/LEMNConf2006_files/Presentations/Smith,R.pdf · Three dimensional modelling of hydrodynamics and

Programs Schematic...