supplemental data file for zhai et al. predicted secondary...
TRANSCRIPT
![Page 1: Supplemental data file for Zhai et al. Predicted secondary …genesdev.cshlp.org/content/suppl/2011/12/07/25.23.2540... · 2011-12-07 · CentroidFold predicts an RNA secondary structure](https://reader034.vdocuments.site/reader034/viewer/2022050314/5f76560811c9fb512c0e7b46/html5/thumbnails/1.jpg)
Supplemental data file for Zhai et al. Predicted secondary structures for new Glycine max miRNAs.
The following pages are secondary structures of miRNA precursors generated using the web based service from CentroidFold (http://www.ncrna.org/centroidfold) (Hamada et al. 2009). Since miREAP checks only for the base‐pairing of miRNA/miRNA* but not the overall secondary structure of the precursor, CentroidFold (Hamada et al. 2009) was used to predict each precursor structure and these were checked by eye to remove those that do not have a typical stem‐loop.
For each sequence, we have shown the output of CentroidFold, which includes both a standard base‐pair notation and a graphical representation of the folded sequence. In the folded sequence, the nucleotides are colored with a color gradation from blue to red which corresponds to a probability of pairing, scored in the likelihood range of 0 to 1.
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CentroidFold predicts an RNA secondary structure from an RNA sequence. FASTA and one-sequence-in-a-line format are accepted for predicting a secondary structure per sequence. It also predicts a consensus secondary structure when a multiple alignment (CLUSTALW format) is given.
Seq/Fold: >soy-m0075 GGAAGAAGAGCTTGAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGGATAACAGCGTCTCTATGATTAATTGTTGTGTTGTTTATTCTTTTGCCGATTCCACCCATTCCTATGATTTTCTTTGGTTCCTTTCTTTC ((((((((((((.((((((((.((((((.(((((.(((((((((((((((((((((((..(.(.......).)..)))))))).).)))))))))))).)).))))))))))).)))))))).)))))..)))))))
Energy: -54.20 Kcal/mol
Graph:
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Seq/Fold: >soy-m0077 GATTGGAAGCATGAGCTTCAAAACCAAGAGGTTGTTTAGAGATTGCCTTCACAACAAATTTTCTATTGCATTCTTGATATGTAGACCCTCCTCTGATGCATTTGTAATGATGATCCAAACTTGGTTGTTGGAACCTCAAAACATTATGTTCTATTTGAGTTTCCCTTTTGTGTCGTGAAGCTTTTGATATCCAAGA ..(((((..((.((((((((...(((((((...................................................................................................((((.((((((.............)))))).)))))))))).)...)))))))).))...)))))..
Energy: -27.05 Kcal/mol
Graph:
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Seq/Fold: >soy-m0119 ATTGATTCATCATGGAAGTGAATCGGGTGACTCTTCCATGTTGATCTCTCCTCCACCACCTCCTTAAGGTGATGGCAAATTTCTGAGTTTCCCGAATTTGCTTCCATGGTGAATCAATC (((((((((((((((((((((((((((.(((((........((.........(((.(((((.....))))).))))).......))))).))))).)))))))))))))))))))))).
Energy: -51.96 Kcal/mol
Graph:
![Page 5: Supplemental data file for Zhai et al. Predicted secondary …genesdev.cshlp.org/content/suppl/2011/12/07/25.23.2540... · 2011-12-07 · CentroidFold predicts an RNA secondary structure](https://reader034.vdocuments.site/reader034/viewer/2022050314/5f76560811c9fb512c0e7b46/html5/thumbnails/5.jpg)
Seq/Fold: >soy-m0126 TGTTAGACCAGTCAGCTGAATCCTCTTATGATCAAGAGCTGTAATGCATATCAGTTTTGTTATCAGTTTGAACCGTATTTTCTTTGAATTACCGTAACAGCCCTTCATCATAGGAGGAATCAACTGGCTGGTCTAACA (((((((((((((((.(((.((((((((((((.(((.(((((.(((..............................................))).))))).))).)))))))))))).))).)))))))))))))))
Energy: -55.45 Kcal/mol
Graph:
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Seq/Fold: >soy-m0284 GGTTATGGTCTAACCCGTCTTAGTATAGTTCACTTTCTACGACGGTTATACATGTAACCGTATTAGAAAGTGAACTATACAAAGACGGTTATTCCAAAAAC .....(((..(((.(((((((.(((((((((((((((((..((((((((....))))))))..))))))))))))))))).))))))))))..))).....
Energy: -51.70 Kcal/mol
Graph:
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Seq/Fold: >soy-m0285 GGTTATGGTCTAACCCGTCTTAGTATAGTTCACTTTCTACGACGGTTATACATGTAACCGTATTAGAAAGTGAACTATACAAAGACGGTTATTCCAAAAAC .....(((..(((.(((((((.(((((((((((((((((..((((((((....))))))))..))))))))))))))))).))))))))))..))).....
Energy: -51.70 Kcal/mol
Graph:
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Seq/Fold: >soy-m0327 TCACAGCACAACCAGTATTCTTGTCCGCGGAAGGACCACCCCCGACGGCCAAAGAAAGAAGGAAACTCGATCTCCTCGAGGAGAGATTGAGGGTTGTTTAAGGCTTTGGTGACTATCCATTCGCGGACATGATGGATCTTTGCTTGG ....((((...(((....((.((((((((((.(((............(((((((..........(((((((((((....))..))))))))..).........))))))).....))).)))))))))).))))).....))))...
Energy: -37.84 Kcal/mol
Graph:
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Seq/Fold: >soy-m0458 ACAGGTCGAACGAAACGTTGAGGTATATGTGGACTACATGGTTGTCAAGTCTCCAAGCATACCCCAACATGTGGCAGACCTAG ..(((((...((....((((.(((((.(.(((((((((....)))..))))..)).).))))).))))...))...)))))..
Energy: -21.20 Kcal/mol
Graph:
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Seq/Fold: >soy-m0523 TGTTCCTTTTCTTGCTTCTACTCACCCCCATGACCATTAGTTTATACTTAGTCCAAGTTGTACTTTATTTTGCTGTGGAAGAAGAATAAGACCAAGGTTTTAATTAGAGCCTCGTTTGTGCAAGTGAAAAATAGGATCACATTGACCTATTCTTTTTTCAAGCTCTTTTAATTGTCTTGGGAAGAAAATGAACCCAGAAATGAATGGGGTTGAGGCTGAGAAGAGGCAAGAGAATGGACA (((((.(((((((((((((.((((.((((((......(.((((((......((((((..............(((.(((((((((((((..((..(((((((....))))))).)).....(((((((.........)))).)))...))))))))))))))))............))))))......)))))).........))))))).......)))).))))))))))))).)))))
Energy: -61.27 Kcal/mol
Graph:
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Seq/Fold: >soy-m0550 TGGGTGCTCTTGGAGGACCTTTGAAGGTGCAATTTGATACACAAATCGGACACCATTAAACTCACCATTAAGACAGAGACCTTGTAGTGTTGACACAAGGGAACAGATCCT ...................(((((.(((((.(((((.....))))).)..)))).)))))...................((((((.((....))))))))...........
Energy: -15.30 Kcal/mol
Graph:
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Seq/Fold: >soy-m0590 CTGGAAAGACTATTCTGGATTCAAATTGTTACTTTTAGAATAGATTTTTCGTAAGTGCAATACTGATCTTCGGAACCCCCTTTCTA .(((((((....(((((((.(((.(((((.((((...(((.......)))..)))))))))..)))..)))))))....)))))))
Energy: -19.50 Kcal/mol
Graph:
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Seq/Fold: >soy-m0626 TTTATCTCCTTCGTCGGCATCATTGACTTGACATATTTGCATATAGAGTATTGTACAGGATTAAAAAAATAAATTTAATGGCATTTTCAACGGCCAAAAGCATGATTCAACTTAAGACCATGAAGGGAATATAATGTGATGAGGGAAATGAAGACGACGAAGTAGTCAAA .....((.((((((((.(.(((((..((((.((((((...............................................................................................)))))).))))...))))).).)))))))).)).....
Energy: -21.07 Kcal/mol
Graph:
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Seq/Fold: >soy-m0704 GGATATTTCTTTAGGACTATGGTTTGGACGAGTCACTACTCAGCAGAGAACATGCTAATTGATTTGTGTGCACCGCAAAAGGGGAATAAGATTTTCTACCTATGGCGAGGTATATGTCTGTTGATTTTGGTTATGTTCTCATAACTTTTATTGTTTTCAGCTTTTAGTCCAAAATCGTGCAGAGCTTGATAACACAGAAGAGTTCAGTTGCCACTTGTCCAATCCATAGTTTTAAAGGAATGAACCC ((.(((((((((((((((((((.((((((((((..(.(((.....(((((((((((((((((.....((((..(((.(.(((((((.......)))).))).).)))..)))).......)))))..)))).))))))))..(((((((..((((.((((((((................)))))).)).))))...))))))).))).)..)))))))))).)))))))))))))))))))..)).
Energy: -76.99 Kcal/mol
Graph:
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Seq/Fold: >soy-m0719 TATTTCCTTTTACTTGGTGAATTGTTGGATCACTCTGTGTCAACCAACCATATTGGATTTGGAGCTTCATGCAGAAGACAAAAGAGATGCAAGCCAGAGGAAATATAGAATGATCCAACATTTCACTATGTAAAAGGATTGC ....(((((((((.(((((((.((((((((((.(((((((...(((.......)))........((((.....)))).........................))))))).)))))))))).))))))).)))))))))....
Energy: -48.20 Kcal/mol
Graph:
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Seq/Fold: >soy-m0723 TTTAGGGACTCCTGTCGTAGGAGAGATGACGCCTTCTGTTAGGTAATTAATATGTTGCAAAGCCAACTTGAATTAGCAGTAGCTGTCATCTTTCCTCGGCTGAAGCCCCTTCA ...((((.((.(.((((.(((((((((((((.((.(((((((...........((((......)))).....))))))).)).))))))))))))))))).).)).))))...
Energy: -41.79 Kcal/mol
Graph:
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Seq/Fold: >soy-m0877 AGAGGAGGCATCCAAAGGGATCACATTGATCCCAAATCCAAGCTTCAATGTTCTTCTCTCTTTCTCACTCAAAATATTAATTTTATTTGGGATCATGCTATCCCTTTGGACTTCTC .((((((...(((((((((((..((.(((((((((((...............................................)))))))))))))..)))))))))))))))))
Energy: -36.93 Kcal/mol
Graph:
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Seq/Fold: >soy-m0904 GGGAGAAGAGCTTGAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGAATATATCTGAGACTCGACTCAATCTCGATCTCTCTCAGTGTTGTGTTGTTTTGTTTATCCTTTTGCCGATTCCACCCATTCCTATGATTTCCTTCGGTTCCTCTCTTTC ((((((.(((((.((((((((.((((((.(((((.((((((((((((.(((...((((((.((((.......))))....)))))).................))).).))))))))).)).))))))))))).)))))))).))))).))))))..
Energy: -60.45 Kcal/mol
Graph:
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Seq/Fold: >soy-m1008 CCCTGGGTGATTCAGAAGTTGTTAAGGAATTTACAAGGATAGTGGAAATCTCAAGTGGATTGCTTAAGGACTGGACGTAGG ................((((.(((((.(((((((..((((.......))))...))))))).))))).)))).........
Energy: -16.90 Kcal/mol
Graph:
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Seq/Fold: >soy-m1049 TCATTTTTCTGTGGTCACTTCTGCTCTGGGTGAGAGAAACACGTATTGAAGAAGGTTCATGGCTTAGACAATAAGTTGCTACTTTGCTGAACTCACCATTTTATGTGAAGAAGTGGCTATGCTAATTGTTTGATTCTGTACACGTACGATACGGGTCGCTCTCACCTGGAGTAGGGCTGCCCAAAGCTTTGATAAA ........((.(((.((.((((((((((((((((((..((.(((((((......((.((.((.(((((((((.(((.((((((((.......((((........)))).))))))))...))).))))))))).)))).)).....))))))).))..)))))))))))))))))).)).))).))..........
Energy: -70.10 Kcal/mol
Graph:
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Seq/Fold: >soy-m1063 GTTTTTTTTCTTTTGTGTCGTGAAGCTTTTGATGCCTAAGAACCCTAGAGCACCAATTATTAGATGTAGTATTAGTGGCCAAGCACAAAAAAAAAAAAAA .((((((((.((((((((...(..(((...(((((.................................)))))...))))..)))))))).)))))))).
Energy: -12.81 Kcal/mol
Graph:
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Seq/Fold: >soy-m1071 GTCGCAAGCAAGAATGTGAGTTAGAGTGAGCATCCCTAAAAAAAGAATTTCAAATTCTATATTTTTGAGAGAATTTGAAATCCCACTATTTTAGTCTGTCGCAACCTACCTTACGACG ...............(((((.(((......((...((((((...(.((((((((((((.(.......).)))))))))))).).....))))))..)).......))).)))))....
Energy: -16.12 Kcal/mol
Graph:
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Seq/Fold: >soy-m1090 GATTTTCTTATTTTTAAAAGGTTCAGTTAGGTCCTTTATTTTTTAAAATGGGTTCAATTTGGTCCCACTTAAACTCATTTTTTGAAAATGTTCGAAGCTGTTGGAAGAAAATGGGACCAACCCAATTTAAAAAATAAAAGACCTAATTGAACCTTTTAAAAATAAAGGGACCA ....(((((((((((((((((((((((((((((.(((((((((((((.(((((......((((((((............(((((((....)))))))..............))))))))))))).))))))))))))).)))))))))))))))))))))))))).)))....
Energy: -68.37 Kcal/mol
Graph:
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Seq/Fold: >soy-m1107 ACGAGTTTGAGCTGGCGTCGACACGTGGCATGGGACTAGTCAGTTAAACTGGCGATTTGTAAGTAGCAGGGCTCCTCAGCTTTTTCAGGGTTGCAGCTCAGCTTTTTCAGGGTTGTAGGCACGCGTGAAGGCAGCAGGAGCAGCACTTGA ...(((((.((((((((((..((.......)).)))..))))))))))))...............((...(((((((.((((((.(.(.((((((((((.(......).))))))).))).)..).)))))).).)))))).))......
Energy: -37.70 Kcal/mol
Graph:
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Seq/Fold: >soy-m1128 ATCTTTGATCTGGGTGAGAGAAACGCGTATCGATGAGATTCAGGGCTTACTAGTTCACACAGTTGCATCCACACACCAATTGTTTTAACAATTTGGAGTGAGTGTGTTTTGATCGATACGGGTCCTCTCACCTAGACTAGAGTT ..(((((.((((((((((((..((.(((((((((........(((((....))))).........((..(.(((.((((((((....))))).))).))).)..)).....))))))))).)).)))))))))))).)))))..
Energy: -54.40 Kcal/mol
Graph:
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Seq/Fold: >soy-m1167 TGATCATGGCAATGTCTGGGCTTAGCGAGGCGGTCACGAGCTTAGCGTGCTTTTGGGTTTCTTCATGGTCCTTCTTCGTGCTAAGCTTGAGCTTGCCTGCTAAGCGAGGAGGTGCGTTGAGCC ........((....(((..(((((((.((((((.(.(((((((((((((.....(((((.......))))).....))))))))))))).).)))))))))))))..)))...))........
Energy: -42.80 Kcal/mol
Graph:
back
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Seq/F>soy-m11AAATTCTG........
Energ-28.90 K
Graph
Fold: 191 GGAAGTAGTC....(((((.
gy: Kcal/mol
h:
CTTTCCTTTTT....((.....
TGGTAAACTA.))...))))
ACACTTTCCCT).......((
TCTTCAAAAG((.(((((((
GTTCTTATGGA(..(((((((.
AAAAGACACA...(((((..
ATAAAGATGTC......))))
CTGTTTGCAT)).((((...
ACAAGCCATA.)))))))))
AAGCTCTTTT)))..)))))
GAGAGCTTCT))))).....
TCTAGAGTAT..........
T
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Seq/F>soy-m12GCTTTGAA..((((((
Energ-21.19 K
Graph
Fold: 200 AGAAGTGGGT((..(((.((
gy: Kcal/mol
h:
TGGGTTGGTGC((((((((..(
CTGCAGCTAG((...(((((
GATCAAAATGG((((.......
GGATTTAGCG.)))))))).
GAATTGGGAAT..........
TCGGAGATAA..........
AGAGAAAGCCA.....)))).
ATGACTTACA..))))))).
ACACGCATTTC)))...))))
CAAATG ))))..
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Seq/F>soy-m12CATCGAGAGAAAATTT((((....)...))))
Energ-58.71 K
Graph
Fold: 212 ATTTTATAGTTAGATTTCAA.((((((((())))))))).
gy: Kcal/mol
h:
TCTGACATCTGAATGTCAGATT((((((((.((.))))))))))
GGAATTTAAATATAAAACAT(((((((((()))))))...
ATGTCTCAACATGGGTGA ((...((((((.)))).
AAGGGCGTTA
((((((....
AGATCCAACAA
..........
ACGTTCCACA
..........
AATGCTAATGG
..((....((
GGAGAATTCA
((((((....
AAATTTGGGAC
(((..((((.
CCTCTCTCTC
....))))..
ATTTCTTCTC
)))..)))))
CCTTTCACGCT
))).....)).
CTTTGAAACAA
..........
AATAAAGGAC
..........
CACCCGAGATC
..........
CCCCGTAGAA
..........
GCTCTTGTTG
))))))))))
G
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Seq/F>soy-m12GTGGATTGCGTCAATA((((((((........
Energ-86.36 K
Graph
Fold: 249 GTTAACTTGGATAGAATCCC(((.((((((.........)
gy: Kcal/mol
h:
GGCTGAGCTTACGGTCAACACC((.(((((((.))))))))).
AGGTGAGTGTCCACCGGAGT.((((.((((.)))).))))
TTGACCGTGGTTTCAATTCAAG((((((((((())).))))))
TGTGCTCTAAGTCAATAGTT(((((((((()).)))))))
AGCAAACCTAGTCACC (....((((..))).
GATTCAAGGT
......))))
TCTTTGGAGTT
..)))))))(
TCAGCTTACC
(((((((.((
CTCTGGCAAG
....))..))
GGTTGAGACA
)))))).)))
CCATGGGGGA
)))((((((.
ATGGGTGTGTA
.(((((((...
TACCTGCAAAA
..........
AAAGACACTC
....))))))
CAGACTCTCAG
)..)))))).
GTCATTAAGG
..........
AATCTACCAG
..........
G
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Seq/F>soy-m12GCTGATGCCACGCACA.(((((((........
Energ-75.21 K
Graph
Fold: 250 CTAGGTGCACACCTAGCACA((((((((((..........
gy: Kcal/mol
h:
CCAGCATTATTAAATGTGAAGA(((((((((((...........
TGCTGGTGCAAAAGTGTACT((((((((((...)))))))
ATCCAGCACTTTAGCAATAATG((..((((...))))))))))
TAAAGAGAAAGTTGGATGCA.......((())))).))))
AAGACTAAAATACCTAGCATCA((((((.....))))))))))
TATCTCTGATAG .((.....))))
TTCATAAGTCT
.....)))))
TTTTACGGAT
))))......
CAAATGCTTA
....))))((
AATATCAACA
(((((.....
TACGAATCAA
..........
ACTTAATTTAT
.........))
ATATTAATCTT
))))).....
TACGGATCAA
...(((((..
ACTCGATCCAT
...)))))..
TACAATTTAC
..........
GGATCACTCT
..........
T
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Seq/F>soy-m13GCATCAAC...(((.(
Energ-77.60 K
Graph
Fold: 316 CTTCGACGAA(((((((((.
gy: Kcal/mol
h:
ACTCTTCGTCG..(((((((((
GGCATCGACA((..(.((((
ATCCACGGAGA(((((((((((
ATGTCTTGCC(...((((((
CGGACTTGGAG(((((......
GATGTTCGGC...)))))))
CGAGTTCTCCG))).))))))
GTGGATGTCA))))))))).
AGCACCGGCGA)..)))))))
AGGAATCGTC)))).)))))
GGAGATGAAC)))).)))..
CT ..
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Seq/F>soy-m13GCTTCTAATTGGAGTT..........)))).)
Energ-17.07 K
Graph
Fold: 336 AGCCAAGTCCTAGCGGGAAA..........).))))....
gy: Kcal/mol
h:
CAAAGTAGGAAAGCA ...(((..(((....
ATGTTGCATT
((((((....
TTTCAAACAAT
(((.......
TTTGTTAGCA
..........
ATTGGAAAACA
..)))...))
AGTATTCTAT
))))))).))
TTTTTGAGTTG
).........
GCCAAATAGA
..........
ACCATGTTAAA
..........
AGCCAACCAC
..........
CAATACTGCC
.....((((.
CATCTCTTCAT
.(.((((.(((
ATCCTTATGCC
((...(..((
CTTCAGCCTG
(((((((.((
GAATATGTGTA
........))
ATGTTGAAGG
).))))))))
AAATGATGTT
...)))))..
T
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Seq/F>soy-m13TTTTGGTC.((((.((
Energ-65.43 K
Graph
Fold: 354 CTGGGTTCCT((((((((((
gy: Kcal/mol
h:
TATTGTCAAGT(((((((.(((
TTAAGTGATG((((((((((
GACATGACATC((..(((((((
CATCTGATGA(((((((((.
ACTGATATATA(.........
ATTGGAAGAG.........)
GCCGTTGAGAT.)))).))))
TGATGTCACA))))))))..
ATCATCACTTA))))))))))
AGCTGACGGT))))))))))
AGGGACCTAG))))))))))
GGACAAA )).))))
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Seq/F>soy-m13CCAACTTC......((
Energ-19.10 K
Graph
Fold: 360 CAGGCTCAGG(((..((((.
gy: Kcal/mol
h:
GAGGCAGTGTG...((((((((
GAGTTCTTGT((..((....
TGATTGCATCT))))))).))
TGCGACTGAA)))..)))).
AACTGAGACTG.)))).....
GCATCTGGAT..........
TGAAGGATA ........
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Seq/F>soy-m14GGTAAATT.(((((.(
Energ-55.60 K
Graph
Fold: 403 TGAATTGAAC((((((((((
gy: Kcal/mol
h:
CTTCTCCTATA((((((((((.
AAGTTAAAAT.(((((((((
TCAACTTATAC(((..((((((
CACATAATTT(((....(((
TTCGTAGAAAC((.(.((((.(
CTCTATCCTA((........
ATAGCTTCTTC.)).)))).)
CAAAAGCTGA).))))....
AAGTGTGTAAC.)))))))).
CCTGATTTTA..))))))))
GCTGGTAGGA))).))))))
AGAAGTTCAGT)))))))))))
GTTCATTTTAC)))).)))))
C )
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Seq/F>soy-m14GGCCGCGG.((.((((
Energ-63.50 K
Graph
Fold: 418 GTGGCGGGTC((((((.(((
gy: Kcal/mol
h:
CCCTCCGGGTC(((((((.(((
CGTCTCCGTC((((((((((
CTGCGGAGGAC(..........
CGACGGAGAC.)))))))))
CGACGACGGGG)))..)))))
GAGGACGCGC).)))).)))
CCGCTGCTGCA)))))).)).
A .
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Seq/F>soy-m14GTTGGAAC.(((((((
Energ-43.60 K
Graph
Fold: 427 CAGAGGAATC(.((((((((
gy: Kcal/mol
h:
CCATTCAGATC(((((.(((((
CTGTTTCGCA((((((((..
AACACCATATT..(((.....
TGGGTTCGAC..))).....
CTGAAACAGAT))))))))))
TCTAAATGGA))).))))))
ATTCCTTAGTT)))))).)))
TCTGA )))))
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Seq/F>soy-m14GGATATTTCTGCAGAG((.(((((....))))
Energ-66.17 K
Graph
Fold: 444 TCTTTAGGACGGTTGATAAC(((((((((())))).....
gy: Kcal/mol
h:
CTATGGTTTGGCACATTGTAGT((((((.((((....)))))).
GACAAGTCACTGACAGAAGA(((((((....)))))))..
CTACTCAGAGCAGTTCAGTTGC.((((((.((.....))...
CACAAAACATCCACTTGTCC((((........))))))))
TGCTAATTAATCAATCCATAGT..........)).)))))))
TTTGTGTGCATTTTAAAGGA....))))).))))))))))
ACTGGAATGTTAATGAACCC ))))......)))..)).
TCTCTACCTA
..........
ATCTATCGTGA
..........
AGCTATATAT
..........
CTCTTTGGTT
.......(((
TATGTTCTCAT
((((....)))
ATAACTTCTGT
))))((((((
TTTTTGCAAG
((.(((((((
GTAATCTTGAC
....).....
CCAGCTTCTA
.((((((((.
GTCCAAAATC
..........
C
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Seq/F>soy-m14AAACTCTT....((((
Energ-45.69 K
Graph
Fold: 480 TCATTAGCTA((((((((((
gy: Kcal/mol
h:
AATCATTAGCT(((((((((((
TAATTTGTAA(((((.(((.
AATGTCATCTC(.((..((((
CATTTTTTAG(((.......
GAAAAGCTTTA.........)
ATGAGAGCTT)))))))).)
TCTACTAATTA.))).)))))
AGCTAATGGT))))))))))
TAGCTAATGA))))))))))
AAGAACTC ))))....
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Seq/F>soy-m14ATTTACTT........
Energ-29.50 K
Graph
Fold: 498 TGTTAGTGTT....((((..
gy: Kcal/mol
h:
TGTCCTGTCGA...((((((((
AACACGGACA(.((((.(((
ACCAACATGTG((...((((((
GTCAGACACC(((.(....)
CAGACACGAAC.)))))....
CAAAAGAATG.......)))
GGAGTGTACGT..)))).)))
TGATTGATAG)).)))))))
GGTTCTCACTT)....)))).
TCTGTAGAAT..........
ATCTATTTTT..........
TACTTTCATGC...........
GCAACGTGGAT..........
TA ..
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Seq/F>soy-m15GAAAGTCT.((((.((
Energ-45.75 K
Graph
Fold: 500 TTTAGCAACC(((((((..(
gy: Kcal/mol
h:
CCTCAAAGGCT((((((((..(
TTCCACTACT((((((((((
TCCATATTTCA(((........
AGTCTAGTGA..........
AATGTCCACAA...((((...
AACATGGAGG....))))))
GAGTAGTGGAA))))))))))
ACTTTGAGGC))))))))).
CTGCTGAAGC.)))))))).
CCTTT .))))
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Seq/F>soy-m15TAAATTTT((((((((
Energ-47.90 K
Graph
Fold: 551 TCTTGAGAAT((((((((((
gy: Kcal/mol
h:
TTTGGCCTCTG(((((.(((((
GTCCATGTCT((((((.(.(
TAATTATTAAT((((((((...
TTCCAATAAT....))))))
TTGAGATGGAT))).))))))
TAGAGCCCAA))))).))))
AATTCTCAAGA))))))))))
AGAATTTGT)))))))).
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Seq/F>soy-m15CACTTGGGGTGTTGTA........(((.....
Energ-18.53 K
Graph
Fold: 577 GTTGATGATTACATTATCAC.................)))
gy: Kcal/mol
h:
TTTCAATACGACATTAGAGTC ....................
ATTTCATTTA
.........(
AAGAAGTTAGT
(((((((....
TTGCTTCTTT
..))))))).
TCAGCTTACCA
..........
AACAATGAAG
...((((..(
GCCACACAATC
(((((......
CAAGAATTAC
..........
AAGTGGCAAC
..)))))..)
CATTAACAAA
))))......
AATCCCTTTG
..........
GACAACCATTT
...........
TTTAGGAAAAA
..........
AAAACCATAC
..........
CAAGTTTATGT
....(((((.
TTTACATAAA
....))))).
GTCAATAATT
..........
T
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Seq/F>soy-m16TATTAGAA...(((((
Energ-24.50 K
Graph
Fold: 625 AAGTGAACTA(((((((.((
gy: Kcal/mol
h:
ATACAAAGACG((((.((((((
GGTTATTCCA((((......
AAAAACCGTTT..))))))))
TTAGTATAAT)).))))).)
TTTACTTTTTA))))))))))
ACGA )...
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Seq/F>soy-m16AAGAGTTT..((((((
Energ-108.30 K
Graph
Fold: 631 TGGGCTGGCG((((((((((
gy: Kcal/mol
h:
GTCGACACGTG(((((((((((
GGCATGAGAC((((((((((
CTAGTCAGTGG(((((((((((
GCAATTTGCA((.(((((((
AGGTAGCAGGG((.((((...(
GCTTCTCAGC(((.(((.(.
CTTTTTCAGGG.....).)))
GTAGCAGGGT).)))...))
TACTGCAAAT))))))))))
TCGCCAATTG).))).....
GACTGGCTAG.)))))))))
GTCTCATGTCA)))))))))))
CACGTGTCGAC))))))))))
CGTCAGCCCA))))))))))
AAACTCGT )))))..