some examples of how nmr can provide information about biological systems
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Some examples of how NMR can provide information about biological systems. Autoinhibited Multi-Domain Proteins are Critical in Many Signal Transduction Pathways. Numerous multi-domain proteins transmit signals from the T-cell receptor. Rosen lab. - PowerPoint PPT PresentationTRANSCRIPT
Some examples of how NMR can provide information about biological
systems
Autoinhibited Multi-Domain Proteins are Critical in Many Signal Transduction Pathways
• Numerous multi-domain proteins transmit signals from the T-cell receptor
Rosen lab
Vav proto-oncoprotein is a key GEF that regulates Rho family GTPases
• A member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins.
• Important in hematopoiesis, playing a role in T-cell and B-cell development and activation.
• DH domain is inhibited by contacts with the Acidic (Ac) region and is relieved by phosphorylation of the Ac region tyrosines
A Helix From the Ac Domain Binds in the DH Active Site: Autoinhibition by Occlusion
• Y3 is buried in the interfaceAghazadeh, et al. Cell, 102: 625-633.
Phosphorylation Disrupts Autoinhibitory Interactions
• Amide resonances from N-terminal (Ac region) helix collapse to the center of the 1H/15N HSQC spectra and become extremely intense
• 13Ca and 13Cb assignments indicate that the N-terminus is random coil
Aghazadeh, et al. Cell, 102: 625-633.
How is Y3 Accessed by Kinases?A general problem in autoinhibition/allostery: activators must contact buried sites
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Chemical Shift Can Report on Population Distribution
closed
open
50:50mixture
• Linearity of chemical shifts across multiple perturbations indicates a two-state equilibrium
wobs = powo + (1-po)wc
Mutants Sample a Range of Population Distributions
wobs = powo + (1-po)wc
Conformational equilibrium controls Vav activation by Src family kinases
Open
Closed
• Linearity strongly suggests an equilibrium between Y3- bound and Y3-unbound states
Rosen lab
Vav WASP/Cdc42
Nature. 1999 May 27;399(6734):379-83.
Nature. 2000 Mar 9;404(6774):151-8.
Science. 1998 Jan 23;279(5350):509-14.