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Cell Reports, Volume 18 Supplemental Information Roles for Cell-Cell Adhesion and Contact in Obesity-Induced Hepatic Myeloid Cell Accumulation and Glucose Intolerance Yasutaka Miyachi, Kyoichiro Tsuchiya, Chikara Komiya, Kumiko Shiba, Noriko Shimazu, Shinobu Yamaguchi, Michiyo Deushi, Mizuko Osaka, Kouji Inoue, Yuta Sato, Sayaka Matsumoto, Junichi Kikuta, Kenjiro Wake, Masayuki Yoshida, Masaru Ishii, and Yoshihiro Ogawa

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Page 1: Roles for Cell-Cell Adhesion and Contact in Obesity ... · in Obesity-Induced Hepatic Myeloid Cell Accumulation and Glucose Intolerance ... type mice fed a standard (SD ... in Obesity-Induced

Cell Reports, Volume 18

Supplemental Information

Roles for Cell-Cell Adhesion and Contact

in Obesity-Induced Hepatic Myeloid Cell

Accumulation and Glucose Intolerance

Yasutaka Miyachi, Kyoichiro Tsuchiya, Chikara Komiya, Kumiko Shiba, NorikoShimazu, Shinobu Yamaguchi, Michiyo Deushi, Mizuko Osaka, Kouji Inoue, YutaSato, Sayaka Matsumoto, Junichi Kikuta, Kenjiro Wake, Masayuki Yoshida, MasaruIshii, and Yoshihiro Ogawa

Page 2: Roles for Cell-Cell Adhesion and Contact in Obesity ... · in Obesity-Induced Hepatic Myeloid Cell Accumulation and Glucose Intolerance ... type mice fed a standard (SD ... in Obesity-Induced

A

4 10 160.0

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TG FFA

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Icam1 Vcam1 Sele Selp0

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Figure S1

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Miyachi Y et al.

Figure S1, related to Figure 1.

Changes of metabolic profiles and effects of anti-diabetic therapy on hepatic gene expression in obese

mice.

(A) Changes of epididymal fat (Epi) and liver weights, blood glucose, serum total cholesterol, triglyceride

(TG), and free-fatty acid (FFA) levels in wild-type mice fed a standard (SD, open circles) and a high-fat (HFD,

closed circles) diet for 4, 10 and 16 weeks (n = 4). (B) mRNA levels related to cell adhesion molecules in the

liver of mice fed a SD or a HFD for 16 weeks or 8-week-old ob/ob mice. Mice were given the vehicle or 10

mg/kg of ipragliflozin (SGLT2i) in drinking water during last 4 weeks (n = 4). All values represent mean ±

s.e.m. ** p < 0.01, *** p < 0.001 vs. SD or WT. # p < 0.05, ## p < 0.01 vs. HFD or ob/ob + Vehicle.

Page 4: Roles for Cell-Cell Adhesion and Contact in Obesity ... · in Obesity-Induced Hepatic Myeloid Cell Accumulation and Glucose Intolerance ... type mice fed a standard (SD ... in Obesity-Induced

Figure S2

ob/ob

L

L

HM M

H

H

H

M

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Mo

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Miyachi Y et al.

Figure S2, related to Figure 2.

Backgating analyses of flow cytometry data and representative electron microscopic images in liver of

ob/ob mice.

Liver non-parenchymal cells were isolated after collagenase digestion and labelled with anti-CD45, CD11b,

F4/80, and Gr-1 antibodies. Cell types were defined as follows: (A) recruited myeloid cells (RMCs,

CD45+CD11b+F4/80dim), Kupffer cells (KCs, CD45+F4/80+), neutrophils (CD45+CD11b+Gr-1+), monocytes

(CD45+CD11b+Gr-1dim). Representative relative positioning of neutrophils (red) and monocytes (blue) in liver

of (B) SD- or (C) HFD-fed mice on F4/80 vs. CD11b dot plots. (D) Percentage of neutrophils (Neu),

monocytes (Mo), and other cell population (Others) in recruited myeloid cells (RMCs) (n = 4). (E) Absolute

numbers of RMCs, KCs, neutrophils, and monocytes per gram of liver tissue from WT mice fed an SD or an

HFD for 16 weeks (n = 4). (F) From left to right, sinusoidal wall, a transmigrating monocyte across sinusoidal

wall in scanned and transmission electron microscopes, and a transmigrated macrophage among hepatocytes

in liver of ob/ob mice. H; hepatocyte, L; lipid droplet, M; monocyte/macrophage.

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0

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Adherent cellsC D E

F Adherent cells

ob/ob

Figure S3

0 4 8 12 16 20 24

Complement andcoagulation cascades

Cytokine-cytokinereceptor interaction

Focal adhesion

Chemokine signalingpathway

ECM-receptor interaction

Toll-like receptorsignaling pathway

Cell adhesion molecules

Leukocytetransendothelial migration

-log (p value)

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Miyachi Y et al.

Figure S3, related to Figure 4.

Cell adhesion to LSECs from ob/ob mice

(A) The pathways enriched among the upregulated (> 1.5-fold) mRNAs in cultured LSECs from an

8-week-old ob/ob mouse compared with a WT mouse. The results are expressed as -log (p value). (B)

Representative gating strategy of LSECs from the liver of SD-fed mice after collagenase digestion. (C)

Relative mRNA levels of Ccl2 in F4/80-positive cells and LSECs from liver of WT and ob/ob mice (n = 4).

(D) MCP-1 protein production in LSECs from liver of WT and ob/ob mice (n = 4). (E) Quantification of

adhered WEHI 274.1 cells to LSECs from WT or ob/ob mice at 0-2 and 2-5 min of perfusion in parallel plate

flow adhesion assay (n = 3). (F) The cumulative number of adhered WEHI 274.1 cells to LSECs from SD- or

HFD-fed mice during 5 min of perfusion, after pretreatment with blocking antibody against LFA-1, VLA-4,

PSGL-1, or control (Ctrl) IgG to WEHI274.1 cells (n = 3). (G) A representative plot and quantification of

flow cytometry for VLA-4 expression in KCs and RMCs from the liver of SD-fed WT mice (n = 3). All

values represent mean ± s.e.m. * p < 0.05, ** p < 0.01, *** p < 0.001 vs. WT or Ctrl IgG.

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0 30 60 1200

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Page 9: Roles for Cell-Cell Adhesion and Contact in Obesity ... · in Obesity-Induced Hepatic Myeloid Cell Accumulation and Glucose Intolerance ... type mice fed a standard (SD ... in Obesity-Induced

Miyachi Y et al.

Figure S4, related Figure 6.

Metabolic and hepatic gene profiles in SD-fed mice treated with anti-VLA-4-blocking antibody.

(A) Representative plots of flow cytometry for VLA-4 and LFA-1 protein expression in RMCs from SD-fed

mice pretreated with VLA-4 Ab or Ctrl IgG. (B) Body weight (BW), fasting glucose, serum insulin, liver

triglyceride (TG) content, serum alanine aminotransferase (ALT), free-fatty acid (FFA), total cholesterol (TC),

and TG levels in mice fed a SD for 16 weeks. After 10 weeks of the SD, anti-VLA-4 blocking antibody

(VLA-4 Ab) or isotype control IgG (Ctrl IgG) was intraperitoneally injected (n = 6). (C) Intraperitoneal

glucose (GTT) and insulin (ITT) tolerance test on SD-fed mice after treatment of VLA-4 Ab or Ctrl IgG for 5

and 4 weeks, respectively. (D) mRNA levels in liver from SD-fed mice after treatment of VLA-4 Ab and Ctrl

IgG for 6 weeks (n = 6). (E) Absolute numbers of RMCs, KCs, neutrophils, and monocytes per gram of liver

tissue from HFD-fed mice treated with VLA-4 Ab or Ctrl IgG for 6 weeks (n = 6-8). All values represent

mean ± s.e.m.

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0

1

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Hepatocyte

Figure S5

0 0.5 1 1.5 2 2.5 3

Cytokine-cytokinereceptor interaction

Focal adhesion

Pathways in cancer

Axon guidance

Calcium signalingpathway

Notch signalingpathway

ECM-receptorinteraction

-log (p value)

Hepatocyte

E

0.0

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Transwell coculture (”Trans”)

Primary hepatocyte

+Intrahepatic CD45 cell/ RAW264.7 cell

D

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Miyachi Y et al.

Figure S5, related to Figure 7.

Activities of Notch signaling in hepatocytes of SD- or HFD-fed mice

(A) The pathways enriched among the upregulated (> 2.0-fold) mRNAs in hepatocytes from 22-week-old

HFD-fed mice treated with IgG compared to those from SD-fed mice and HFD-fed mice treated with

anti-VLA-4 blocking antibody. The results are expressed as -log (p value). (B) Representative immunoblot

images and quantifications of protein expression of Notch1 intracellular domain (NICD) in isolated

hepatocytes from WT mice fed an SD or an HFD for 16 weeks (n = 6). Alpha-tubulin was used as an internal

control. (C) mRNA levels of Notch1 in cultured primary hepatocytes from SD- or HFD-fed mice pretreated

with or without p53 inhibitor Pifithrin-α (1 µM) (n = 4). (D) Illustration of coculture system. (E)

CSL-luciferase activity in Hepa 1-6 cells co-cultured with RAW 264.7 cells pretreated with γ-secretase

inhibitors DAPT (10 μM) or JLK6 (1 μM) or without inhibitors (n = 3). All values represent mean ± s.e.m. * p

< 0.05, ** p < 0.01, *** p < 0.001 vs. SD or indicated groups.

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Movie S1, related to Figure 3.

A representative movie for myeloid cells in liver of LysMEGFP mice on WT background.

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Movie S2, related to Figure 3.

A representative movie for myeloid cells in liver of LysMEGFP mice on ob/ob background.

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Movie S3, related to Figure 4.

A representative movie of parallel plate flow adhesion assays between WEHI 274.1 cells and LSECs

from SD- or HFD-fed mice.

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Movie S4, related to Figure 5.

A representative movie of a myeloid cell in transition from rolling to adhesion state in liver of LysMEGFP

mice on ob/ob background.

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SUPPLEMENTAL EXPERIMENTAL PROCEDURES

Reagents

Ipragliflozin was provided by Astellas Pharma Inc. Other reagents were purchased from Sigma-Aldrich (St.

Louis, MO) or Nacalai Tesque (Kyoto, Japan), unless otherwise noted.

Cell isolation and culture

WEHI 274.1, RAW 264.7 and Hepa 1-6 cells were purchased from ATCC and maintained in Dulbecco’s

modified Eagle’s medium (DMEM) containing 10% fetal bovine serum (FBS). Liver sinusoidal endothelial

cells (LSECs) were isolated as previously described (Tsuchiya and Accili, 2013). In brief, mice are

anesthetized and catheterized the portal vein using a 24-gauge catheter (Terumo, Tokyo, Japan). They were

perfused with 10 ml pre-digestion buffer (Hanks' Balanced Salt Solution without Ca2+ and Mg2+, 0.5 mM

EGTA), followed by 50 ml digestion buffer (DMEM, 0.05% collagenase type IV). Digested tissue was

suspended with DMEM containing 10% FBS, and the suspension was passed through a 100 µm nylon mesh

filter (BD Falcon). Suspended tissue was centrifuged at 50 g for 3 min to pellet hepatocytes. The supernatant

containing non-parenchymal cells (NPCs) was centrifuged at 400 g for 5 min. The pellets were incubated with

CD146 microbeads (Miltenyi Biotec) for 30 min at 4˚C, and LSECs were purified by magnetic-activated cell

sorting (MACS). Cells were cultured in DMEM containing 10% FBS with endothelial cell growth supplement

(100 μg/ml, BD Biosciences), unless otherwise noted. Intrahepatic leukocytes were isolated from NPCs using

CD45 microbeads (Miltenyi Biotec), after which F4/80-positive cells were enriched by MACS. Primary

hepatocytes were isolated by collagenase digestion of livers and density gradient centrifuge in Percoll as

previously described (Hong, Levasseur et al. 2013). Cells were plated in collagen-coated plates and cultured

in DMEM containing 0.25% bovine serum albumin (BSA).

Coculture of hepatocytes and intrahepatic leukocytes

Coculture was performed in 2 different ways as follows. In the contact system (“Contact”), serum starved

primary hepatocytes isolated from WT mice were cultured, onto which intrahepatic leukocytes or RAW 264.7

cells were plated. The mixture was cultured for 18 h with contact to each other and harvested. As a control

culture (“Control”), hepatocytes and intrahepatic leukocytes or RAW 264.7 cells, the numbers of which were

equal to those in the contact system, were cultured separately and mixed after harvest. In the transwell system

(“Trans”), cells were cocultured by using transwell inserts with a 0.4-μm porous membrane (Corning) to

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Miyachi Y et al.

separate hepatocytes from intrahepatic leukocytes or RAW 264.7cells. After incubation for 18 h, the cells in

the upper and lower wells were mixed after harvest.

Immunohistochemistry

Liver tissues were fixed in 4% Paraformaldehyde phosphate buffer solution (4% PFA/PBS) for 24 h at room

temperature. Deparaffinized sections (2 μm) were incubated with Proteinase K (Dako) for 5 min to

accomplish antigen retrieval. Endogenous peroxidase activity was blocked with 0.3% H2O2 in methanol for 30

min. A rabbit anti polyclonal CCR-2 antibody (ab21667, 1:200 dilution; Abcam) was used to detect

CCR-2-positive cells, and a rat anti monoclonal Gr-1 antibody (clone: RB6-8C5, 1:100 dilution; Biolegend)

was used to detect neutrophils. CCR-2-positive cells and neutrophils were counted on 15 high-power (x400)

fields (HPFs) per slide and expressed as the mean number per HPF.

Flow cytometry and cell sorting

Liver NPCs were washed in PBS and centrifuged at 50 g for 2 min to remove debris and hepatocytes. The

supernatant was collected and centrifuged at 400 g for 5 min. The pellets were resuspended in 200 µl PBS

containing 0.25% BSA, 0.2 mM EDTA, and 1% penicillin/streptomycin. Cells were preincubated for 10 min

at 4˚C in Fc Block (CD16/32, BD Biosciences) and then stained for 30 min with fluorophore-conjugated

antibodies at 4˚C. The following antibodies were used: anti CD45 (clone: 30-F11, Biolegend), anti F4/80

(clone: BM8, Biolegend), anti CD11b (clone: M1/70, Biolegend), anti Gr-1 (clone: RB6-8C5, Biolegend), anti

VLA-4 (clone: R1-2, Biolegend), anti LFA-1 (clone: H155-78, Biolegend), anti CD146 (clone: ME-9F1,

Miltenyi Biotec), and anti VCAM-1 (clone: 429, Biolegend). Flow cytometric analysis was performed using a

FACSCantoII (BD Biosciences). Cell sorting was carried out with a FACSAriaII (BD Biosciences). Data were

analyzed using FlowJo software (v9.4.10, Tree Star). Cell types were defined as follows: recruited myeloid

cells (RMCs, CD45+CD11b+F4/80dim) (Obstfeld et al., 2010), Kupffer cells (KCs, CD45+F4/80+), neutrophils

(CD45+CD11b+Gr-1+), monocytes (CD45+CD11b+Gr-1dim) (Xia et al., 2011), and LSECs (CD45-CD146+).

Quantification are shown as a percentage of CD45+ cells in the liver non-parenchymal cells and/or absolute

numbers per gram of tissue weight. For testing the specificity of anti-VLA-4 blocking antibody (clone: PS/2),

liver NPCs were pretreated with PS/2 antibody or isotype control IgG after Fc block.

Transendothelial migration assay

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Miyachi Y et al.

Transendothelial migration assays were performed using a transwell system with some modifications as

described (Gupta et al., 2007). Isolated LSECs were plated on transwell inserts (8.0 μm pore size, Corning)

and cultured overnight in DMEM containing 10% FBS. The next day, WEHI 274.1 cells were incubated with

10 μg/ml monoclonal antibody (anti LFA-1, anti VLA-4, control IgG) for 15 min at 4˚C, transferred to

serum-free medium (DMEM, 0.25% BSA), and seeded into transwell inserts (1 x 104 /200 μl). DMEM

containing 10% FBS was added in lower chambers of 24-well plates. Plates were incubated for 1 h at 37˚C.

Migrated cells were counted in five randomly selected fields (x200) and expressed as the mean numbers of

cells per field.

Luciferase assay

Hepa 1-6 cells (5 x 105 /ml) were transfected using Lipofectamine 2000 (Invitrogen) with pGL2 basic vector

(0.1 µg/well, Promega) or 4xCSL-luciferase (0.1 µg/well, Addgene) in 12-well plates. After 32 h incubation,

transfected hepatocytes and RAW 264.7 cells (5 x 104 /ml) were cultured independently, or directly cocultured

with or without Compound E (ab142164, Abcam) for an additional overnight incubation. The luciferase

activity of the whole cell lysate was measured using Dual-Luciferase reporter assay systems (Promega).

Renilla luciferase was used as an internal control. Instead of Compound E, DAPT (ab120633, Abcam) or

JLK6 (107-00161, Wako) was also used in the assay.

Glucose production assay

For glucose production assays, direct and transwell coculture of intrahepatic leukocytes and primary

hepatocytes were used. After cells were cultured in direct and transwell coculture systems, cells were treated

with a combination of dexamethasone (500 nM) and cAMP (100 nM) for 4 h, washed twice with PBS, then

incubated for 6 h in glucose production medium (glucose-free DMEM without phenol red, 30 mM sodium

lactate, 3 mM sodium pyruvate). Glucose content in 100 µl of the medium was measured using a glucose

oxidase assay (Wako). Total protein concentration in cell lysates was measured (BCA assay, Pierce) to correct

for cell count.

Microarray analysis

Microarray analysis was performed using Agilent Whole Mouse Genome DNA microarray 4x44K (Agilent

Technologies, Palo Alto, CA). Total RNAs were extracted from (i) cultured LSECs of an 8-week-old WT

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Miyachi Y et al.

male mouse and ob/ob male mouse or (ii) isolated hepatocytes from 22-week-old SD-fed mice and HFD-fed

mice treated with control IgG or anti-VLA-4 blocking antibody for 6 weeks. The top 3000 genes whose

expression was increased > 1.5-fold in LSECs from the ob/ob mouse (i) were subjected to pathway analysis

using DAVID bioinformatics resources 6.7. For the pathway analysis of primary hepatocytes (ii), genes

increased > 2-fold in HFD-fed mice treated with IgG compared to both SD-fed mice and HFD-fed mice

treated with anti-VLA-4 blocking antibody were selected. Microarray data have been deposited in the NCBI

Gene Expression Omnibus (GEO) under accession code (i) GSE84019 and (ii) GSE85673.

Gene expression analysis

RNA was extracted using QIAzol (Qiagen) according to the manufacturer’s protocol, purified with RNeasy

Plus Mini Kit (Qiagen), and reverse transcribed with Random Primer (Thermo Fisher Scientific) and

ReverTra Ace (Toyobo). Quantitative real-time PCR was performed with SYBR Green Master Mix (Applied

Biosystems) in a StepOnePlus Real-time PCR System (Applied Biosystems). Relative gene expression was

determined using the comparative CT method and normalized to mRNA level of 36B4. Primer sequences are

available on request. Gene expression analysis of human livers was performed using microarray data

(GDS3883) from the Gene Expression Omnibus (GEO) (Misu et al., 2010).

Protein analysis

Tissues or cells were homogenized in a lysis buffer (2% SDS, 4 M Urea, 1 mM EDTA, 150 mM NaCl, 50

mM Tris pH 8.0), sonicated, and centrifuged. Samples were separated by 8 to 12% SDS-PAGE and

transferred to PVDF membranes. Immunoblotting was performed using anti-NICD (ab8925, Abcam), and

anti-α-tubulin (2144, Cell Signaling), followed by ECL detection (GE Lifescience). Band intensity was

quantified using NIH Image J software. MCP-1 concentration in culture medium of LSECs was measured by

ELISA (eBioscience). The amount of MCP-1 was normalized to the total protein content of LSECs.

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Miyachi Y et al.

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