phylogeny of three choreotrich genera (protozoa, ciliophora, spirotrichea), with morphological,...
TRANSCRIPT
Zoologica Scripta
Phylogeny of three choreotrich genera (Protozoa, Ciliophora,
Spirotrichea), with morphological, morphogenetic and
molecular investigations on three strobilidiid speciesWEIWEI LIU, ZHENZHEN YI, XIAOFENG LIN, ALAN WARREN & WEIBO SONG
Submitted: 20 November 2011Accepted: 19 February 2012doi:10.1111/j.1463-6409.2012.00542.x
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian
Liu, W., Yi, Z., Lin, X., Warren, A. & Song, W. (2012). Phylogeny of three choreotrich
genera (Protozoa, Ciliophora, Spirotrichea), with morphological, morphogenetic and
molecular investigations on three strobilidiid species. —Zoologica Scripta, 41, 417–434.
The phylogenetic relationships among three strobilidiid genera, namely Strobilidium, Rimo-
strombidium and Pelagostrobilidium, are investigated using a combination of morphological,
morphogenetic and molecular data. The results indicate that all three genera belong to the
same lineage, in which Rimostrombidium evolved first and Strobilidium and Pelagostrobilidium
derived later. Improved genus diagnoses for Rimostrombidium and Pelagostrobilidium are sup-
plied. The curved kinety 2 and the caudal spiralling of some somatic kineties are confirmed
as generic characters for Pelagostrobilidium and Strobilidium, respectively. In addition, the
morphology and morphogenesis of three species, namely R. veniliae (Montagnes & Taylor,
1994) Petz et al., 1995, P. paraepacrum sp. n. and P. minutum sp. n., isolated from the
South China Sea are described. Pelagostrobilidium paraepacrum sp. n. is characterized by the
presence of six somatic kineties, 30–32 external and two internal membranelles. Pelagostro-
bilidium minutum sp. n. is characterized by its extremely small body size, four somatic kin-
eties, and in having one internal and 19–21 external membranelles. Rimostrombidium conicum
Kahl, 1932 is transferred to the genus Pelagostrobilidium as P. conicum (Kahl, 1932) comb. nov.
Corresponding author: Zhenzhen Yi, Laboratory of Protozoology, Key Laboratory of Ecology &
Environmental Science in Guangdong Higher Education, South China Normal University,
Guangzhou 510631, China. E-mail: [email protected]
Weiwei Liu and Weibo Song, Laboratory of Protozoology, Institute of Evolution & Marine Biodi-
versity, Ocean University of China, Qingdao 266003, China. E-mails: [email protected],
Alan Warren, Department of Zoology, Natural History Museum, Cromwell Road, London SW7
5BD, UK. E-mail: [email protected]
Xiaofeng Lin, Laboratory of Protozoology, Key Laboratory of Ecology & Environmental Science in
Guangdong Higher Education, South China Normal University, Guangzhou 510631, China.
E-mail: [email protected]
IntroductionMembers of the choreotrich family Strobilidiidae are
mostly small to medium-size, spheroid to conoid ciliates
that are characterized by the possession of somatic kineties
arranged in spiral or longitudinal rows and cortical flaps
covering the bases of the somatic cilia (Lynn & Montagnes
1988; Song et al. 1999; Agatha & Struder-Kypke 2007;
Lynn 2008; Xu et al. 2009). According to Lynn (2008),
there are three genera in the family Strobilidiidae, viz.
Strobilidium, Rimostrombidium and Pelagostrobilidium. Nev-
ertheless, their systematic positions are still ambiguous,
and in some studies, results based on molecular data are
Academy of Science and Letters,
not consistent with those based on morphology (Agatha &
Struder-Kypke 2007; Tsai et al. 2008; Kim et al. 2010).
The somatic ciliary pattern is considered an important
generic character for the family Strobilidiidae. Petz &
Foissner (1992), for example, supplied an improved diag-
nosis of Strobilidium based on the characteristic spiralling
of some ciliary rows in the caudal region of the cell.
Strobilidiids lacking such caudal spiralling of its ciliary
rows were transferred to the genus Rimostrombidium, the
original definition of which was simply ‘with ribbed cor-
tex’ (Jankowski 1978). Petz et al. (1995) established
the genus Pelagostrobilidium based on its possession of
41, 4, July 2012, pp 417–434 417
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
transversely arched somatic kineties that do not form a
spiral at the posterior pole. Subsequently, Agatha et al.
(2005) and Kuppers et al. (2006) improved the diagnosis of
Pelagostrobilidium by emphasizing the location of the
arched kinety 2 relative to the other somatic kineties.
The different ciliary patterns in the family Strobilidiidae
were, however, considered as evolutionary convergences
and thus were rejected as a genus level character by Mon-
tagnes & Taylor (1994). This raises questions as to the
validity of Rimostrombidium and Pelagostrobilidium, both of
which were established based on their distinctive ciliary
patterns and the phylogenetic relationships among strobili-
diid species with different arrangements of somatic kin-
eties. Some studies have attempted to address these
questions, for example, the considerable genetic distance
between Pelagostrobilidium neptuni and Strobilidium cauda-
tum corroborated the morphological data and thus the
validity of the genus Pelagostrobilidium (Agatha et al. 2005).
Furthermore, three strobilidiid species each representing
one of these genera, that is, R. lacustris, P. neptuni and
S. caudatum form a monophyletic group in both morpho-
logical and gene trees (Agatha & Struder-Kypke 2007;
McManus & Katz 2009). However, because of the lack of
morphogenetic data and the low number of small subunit
ribosomal RNA (SSrRNA) gene sequences available for
strobilidiid species, taxonomic distinctions and phyloge-
netic relationships among these three genera remain
unclear (Deroux 1974; Petz & Foissner 1992; Agatha &
Riedel-Lorje 1998; Dale & Lynn 1998; Foissner et al.
1999; Agatha 2003; Agatha et al. 2005; Kuppers et al.
2006; Tsai et al. 2008; Kim et al. 2010; Liu et al. 2011).
In the present study, three strobilidiid species, that is,
Rimostrombidium veniliae (Montagnes & Taylor 1994) Petz
et al. (1995) and two previously unknown Pelagostrobilidium
species, were isolated from coastal waters of southern
China, providing an opportunity to investigate their mor-
phology, morphogenesis and SSrRNA gene sequences.
Based on these and previous data, the phylogenetic rela-
tionships among genera within the family Strobilidiidae
are analysed. In addition, improved diagnoses are supplied
for Rimostrombidium and Pelagostrobilidium.
Materials and methodsCollection, observation and identification
Rimostrombidium veniliae was collected from Daya Bay
(22�43¢N; 114�32¢E), Guangdong Province, China, on 29
April 2007. The water temperature was 24.5 �C, salinity
28.2 & and pH 8.4.
Pelagostrobilidium paraepacrum sp. n. was isolated from
Shekou Port (22�29¢N; 113�55¢E), Guangdong Province,
China, on 22 December 2008. The water temperature was
20.1 �C, salinity 27.8 & and pH 8.1.
418 ª 2012 The Authors d Zoologica S
Pelagostrobilidium minutum sp. n. was collected from
Daya Bay (22�43¢N; 114�32¢E), Guangdong Province,
China, on 8 November 2007. The water temperature was
23.0 �C, salinity 33.0 & and pH 8.0.
Plankton samples were collected using 20 lm mesh
plankton nets. The samples were then transferred to Petri
dishes and specimens were immediately isolated for further
study in the laboratory. No cultures were established. Live
cells were observed using bright-field and differential
interference contrast microscopy. The infraciliature was
revealed by protargol impregnation (Song & Wilbert
1995). Illustrations of live specimens were based on direct
observations and light micrographs, while those of protar-
gol-impregnated specimens were made with the help of a
camera lucida at 1000· magnification. Terminology and
systematics are according to Agatha (2004, 2011) and
Lynn (2008), respectively. The numbering of the somatic
kineties follows Deroux (1974) and Montagnes & Lynn
(1991). Briefly, the kineties are numbered in a clockwise
fashion when the cell is viewed from the posterior, the
kinety nearest the cytostomal region being kinety 1 (K1).
Extraction, amplification and sequencing of DNA
Four cells of each species were collected with a micropi-
pette and rinsed 3–5 times with autoclaved seawater to
remove other protists. They were then transferred to a
1.5-mL microfuge tube with the minimum possible vol-
ume of seawater (Huang et al. 2010). Extraction of geno-
mic DNA was performed according to Tsai et al. (2010)
and Yi & Song (2011).
The PCR reactions were carried out using the universal
eukaryotic primers EukA (5¢-AACCTGGTTGATCCTG
CCAGT-3¢) and EukB (5¢-TGATCCTTCTGCAGGTT-
CACCTAC-3¢) (Medlin et al. 1988) for amplification of the
small subunit rRNA gene. Cycling parameters were as fol-
lows: 5 min at 94 �C; 35 cycles of 1 min at 95 �C, 2 min at
56 �C and 2 min at 72 �C; and 15 min at 72 �C (Zhang et al.
2011). The PCR product was purified using the TIAN gel
Midi Purification Kit (Tiangen Bio. Co., Shanghai, China)
and inserted into a pUCm-T vector (Sangon Bio. Co.,
Shanghai, China). DNA from plasmids was harvested using a
QIAprep Spin Miniprep Kit (Tiangen Bio. Co.) and
sequenced (Invitrogen sequencing facility, Shanghai, China).
Phylogenetic analysis
The SSrRNA gene sequences of 75 ciliates were used for
the construction of phylogenetic tree. Coleps nolandi, Pror-
odon viridis and P. teres were used as the out-group taxa. In
addition to the new sequences of Rimostrombidium veniliae,
Pelagostrobilidium paraepacrum sp. n. and P. minutum sp. n.,
72 others were obtained from the GenBank database, the
accession numbers of which are listed in Fig. 1.
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
Fig. 1 Maximum Likelihood tree inferred from small subunit rRNA gene sequences indicating phylogenetic positions of Rimostrombidiumveniliae, Pelagostrobilidium paraepacrum sp. n. and P. minutum sp. n. (bold typeface). Numbers at the nodes represent support values in the
following order: Maximum Likelihood (ML) bootstrap values, Maximum Parsimony (MP) bootstrap values, and Bayesian inference (BI)
posterior probabilities. Nodes absent from one of the three phylogenies are indicated by a hyphen instead of a support value. The field in
green represents the family Strobilidiidae. The scale bar indicates the number of substitutions per 10 nucleotides.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
The SSrRNA gene sequences were aligned using Hmmer
v2.3.2 (Eddy 1998). The ends were trimmed and ambigu-
ously aligned sites were refined by eye using BioEdit (Hall
1999), yielding an alignment of 1570 characters for phylo-
genetic inferences. Bayesian inference (BI) was performed
with MrBayes 3.1.2 (Ronquist & Huelsenbeck 2003) using
the GTR+I (=0.3863) +G (=0.4432) evolutionary model
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
indicated by MrModeltest v.2 (Nylander 2004). The pro-
gram was run for 2 500 000 generations with a sample
every 100th generation. A ‘burn-in’ of 5000 sampled trees
was discarded. The remaining trees were used to calculate
posterior probabilities using a majority rule consensus.
Maximum likelihood (ML) trees were constructed with the
PhyML v2.4.4 (Guindon & Gascuel 2003). The reliability
41, 4, July 2012, pp 417–434 419
Table 1 SSrRNA gene sequence similarities (lower triangle) and number of unmatched nucleotides (upper triangle) between sequenced
strobilidiid species
Rimostrombidium
veniliae R. lacustris
Strobilidium
caudatum
Pelagostrobilidium
minutum P. paraepacrum P. neptuni
R. veniliae 117 105 140 121 151
R. lacustris 93.36% 73 112 96 125
S. caudatum 94.07% 95.85% 105 90 114
P. minutum 91.73% 93.37% 93.78% 108 107
P. paraepacrum 93.16% 94.54% 94.91% 93.61% 116
P. neptuni 91.07% 92.60% 93.23% 93.65% 93.12%
Table 2 Results of AU and SH tests comparing trees that are
representative of alternative hypotheses about the phylogenetic
associations of groups of interest in this study
Hypothesis tested ln likelihood score AU SH
Best maximum likelihood tree (unconstrained) Best 1.000 1.000
Constraint: Lynnella clustered with oligotrichs 18684.22482 0.088 0.365
Constraint: monophyly of Choreotrichida 18712.96882 0.010 0.096
Constraint: monophyly of Strombidinopsidae 18680.67828 0.070 0.382
Constraint: monophyly of Rimobstrombidium 18698.73494 0.012 0.152
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
of internal branches was assessed using nonparametric
bootstrap method with 1000 replicates. Maximum parsi-
mony (MP) trees were constructed with PAUP* 4.0b 10
(Swofford 2002), including bootstrapping with 1,000 repli-
cates. TreeView v1.6.6 (Page 1996) and MEGA 4.0 (Tam-
ura et al. 2007) were used to visualize tree topology.
PAUP* 4.0b 10 was used to generate the constraint ML
trees under the GTR + I + G model to test the hypotheses
that: (i) Lynnella clusters with subclass Oligotrichia, (ii)
Choreotrichida is monophyletic, (iii) Strombidinopsidae is
monophyletic, and (iv) Rimostrombidium is monophyletic.
The best constrained trees, that is, those with the lowest-lnL
values, were compared with the unconstrained ML trees
using the approximately unbiased (AU) test and the Shimo-
daira-Hasegawa (SH) test (Shimodaira 2002) as implemented
in CONSEL package (Shimodaira & Hasegawa 2001).
ResultsSSrRNA gene sequence analyses
The SSrRNA gene sequences of Rimostrombidium veniliae,
Pelagostrobilidium paraepacrum sp. n. and P. minutum sp. n.
are 1768, 1767 and 1683 bp in length (including primers),
respectively. The sequences are deposited in GenBank
with accession numbers FJ876964, FJ876963 and
FJ876959, respectively. The pairwise sequence similarities
between P. minutum sp. n. and other sequenced strobilidi-
ids ranged from 91.73 to 93.78%, whereas those between
P. paraepacrum sp. n. and other sequenced strobilidiids
ranged from 93.12 to 94.91% (Table 1).
All three phylogenetic methods resulted in similar tree
topologies; thus, only the ML tree is shown with support
values for all three analyses listed at the nodes (Fig. 1).
The monophyly of the subclass Choreotrichia was con-
firmed with high support in ML (100%), MP (99%) and
BI (1.00) trees. Lynnella semiglobulosa branches separately
from the choreotrich clade with low support (58% ML,
69% MP, 0.61 BI). Together these form a sister group
with the oligotrichs. Within the subclass Choreotrichia,
the order Tintinnida forms a clade. The monophyly of the
order Choreotrichida was not recovered, because the fam-
420 ª 2012 The Authors d Zoologica S
ily Strobilidiidae groups with the tintinnids rather than
with the strombidinopsid genera Strombidinopsis and Para-
strombidinopsis (Fig. 1). Strombidinopsis branches basally
within the choreotrich clade, followed by Parastrombidinop-
sis. Thus, the monophyly of the family Strombidinopsidae
was not supported. Within the strobilidiid clade, P. minu-
tum sp. n. and P. neptuni cluster together with high sup-
port (98% ML, 99% MP, 1.00 BI) and form a moderately
well-supported clade with P. paraepacrum (65% ML, 79%
MP, 0.94 BI). In ML and MP trees, S. caudatum branches
basally to the Pelagostrobilidium group (33% ML, 42%
MP), followed by R. lacustris (Fig. 1). In all trees, R. veniliae
occupies the basal position within the Strobilidiidae clade
with moderate support (71% ML, 54% MP, 0.98 BI)
(Fig. 1). The monophyly of Choreotrichida and the possi-
bility that the two Rimostrombidium species cluster together
were both rejected by the AU tests (P = 0.010 and 0.012,
respectively) but were not rejected by the SH tests
(P = 0.096 and 0.152, respectively). No other hypothetical
phylogenetic associations were rejected (Table 2).
Description of Rimostrombidium veniliae
Genus Rimostrombidium Jankowski 1978
Rimostrombidium veniliae (Montagnes & Taylor 1994) Petz
et al. 1995 (Figs 2 and 3; Table 3).
Strobilidium veniliae Montagnes & Taylor 1994: 576–578,
Figs 4–6.
Rimostrombidium veniliae Petz et al. 1995: 144; Agatha &
Riedel-Lorje 1998: 16, Fig. 4.
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
A
B C D
E F G H
I J K L
Fig. 2 Rimostrombidium veniliae (Montagnes & Taylor 1994) Petz et al. 1995 from life (A) and after staining with protargol (B–L). ––A.
Lateral view of a typical specimen; arrows mark the kinetal lips. ––B, C. Right (B) and left (C) lateral views of the same specimen
showing the ciliary pattern and nuclear apparatus, note the different lengths of somatic kineties. ––D, E. Early dividers showing the
location of oral primordium (arrows) and the replication bands in the macronucleus (arrowheads). ––F, G. Apical (F) and aboral (G)
views showing the buccal apparatus, somatic kineties and macronucleus. ––H. Early middle divider, the polykinetids are differentiating
and the endoral membrane originates de novo (arrow). ––I–K. Cells in middle stage of division, the new polykinetids perform a distinct
spiral to form a funnel and then start to evaginate; arrowheads denote the replication bands in the macronucleus, arrow marks the
endoral membrane. ––L. Late divider, the new polykinetids splay out to form a closed circle; note the macronucleus condenses to an
ellipsoidal mass, and the somatic kineties split into two equal parts (arrowheads). E, endoral membrane; EM, external membranelles; IM,
internal membranelle; K1–9, somatic kineties 1–9; Ma, macronucleus; Mi, micronucleus. Scale bars–30 lm.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
Remarks. This species was originally described as Stro-
bilidium veniliae by Montagnes & Taylor (1994) based on
scanning electron microscopy and observations of protar-
gol-impregnated specimens. Subsequently, Petz et al.
(1995) transferred it to the genus Rimostrombidium, and
Agatha & Riedel-Lorje (1998) reported a German popula-
tion based on protargol-impregnated specimens. However,
its live morphology remained unknown. An improved
diagnosis is here supplied based on previous and present
observations including data from live specimens from the
Chinese population.
Improved diagnosis. Size 35–55 · 35–50 lm in vivo; sub-
spherical with flattened anterior and rounded posterior
end. One micronucleus in dorsal indentation of C-shaped
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
macronucleus. About nine somatic kineties. Usually 20–23
external and one or two internal adoral membranelles.
Description of Chinese population
Cells mostly about 45 · 40 lm in vivo and 29–41 · 31–
54 lm in protargol preparations. Subspherical to cordiform
in shape, flattened anteriorly and rounded posteriorly
(Figs 2A and 3A–C). No frontal protrusion recognized, with
shallow ridges caused by kinetal lips (Fig. 2A, arrows).
Cytoplasm packed with colourless lipid droplets 2–4 lm
across, and food vacuoles 5–8 lm across, often containing
yellow algae (Figs 2A and 3B,C). Macronucleus C-shaped
with ventral gap, transversely oriented underneath external
membranelles, containing numerous globular nucleoli 1–3
lm across (Fig. 2B, C and G). One faintly impregnated micro-
41, 4, July 2012, pp 417–434 421
Table 3 Morphometric characterizations of Rimostrombidium
veniliae (Montagnes & Taylor 1994) Petz et al. 1995 (Chinese
population, first row), Pelagostrobilidium paraepacrum sp. n. (second
row) and P. minutum sp. n. (third row). All data based on
randomly selected protargol-impregnated specimens
Characters Min Max Mean SD CV n
Cell length in lm 29 41 34.8 3.3 9.8 17
61 81 70.6 5.7 8.2 18
16 27 20.0 3.2 16.0 17
Cell width in lm 31 54 43.8 7.2 16.2 17
52 71 60.2 4.7 7.7 18
12 19 15.4 2.6 16.8 17
External membranelles, number 20 21 20.1 0.3 1.7 17
30 32 30.8 0.7 2.3 21
19 21 20.4 0.7 3.4 17
Elongated external membranelles,
number
2 3 2.3 0.5 20.1 12
3 5 4.2 0.6 13.2 17
3 4 3.5 0.5 14.7 11
Internal membranelles, number 1 1 1.0 0 0 12
2 2 2.0 0 0 17
1 1 1.0 0 0 12
Somatic kineties, number 8 9 8.9 0.2 2.7 17
6 6 6.0 0 0 21
4 4 4.0 0 0 17
Macronucleus, number 1 1 1.0 0 0 17
1 1 1.0 0 0 21
1 1 1.0 0 0 17
Micronucleus, number 1 1 1.0 0 0 10
1 3 1.7 0.7 42.4 14
1 1 1.0 0 0 11
CV, coefficient of variation in %; Max, maximum; Mean, arithmetic mean; Min,
minimum; n, number of cells measured; SD, standard deviation.
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
nucleus in dorsal indentation of macronucleus (Fig. 2C). Nei-
ther contractile vacuole nor cytopyge observed.
Swimming behaviour typical of many strobilidiids with
adoral membranelles projecting radially. In motionless cells,
membranelles overlap like an iris diaphragm (Fig. 3D).
Somatic ciliature usually composed of nine longitudinal
kineties, most of which are conspicuously shortened at
both ends and evenly arranged around equatorial region of
cell (Figs 2B,C,G and 3F,G). Kineties (K) 3, 7 and 8 lon-
gest (about 22–28 lm); K1, 2 and 9 medium length (about
18–23 lm); K4–6 short, about 12–18 lm (Fig. 2B and C).
All kineties composed of closely spaced dikinetids, each
basal body bearing a cilium about 2 lm long (Figs 2B and
3I, arrows). Cilia with kinetal lips covering their proximal
portion (Fig. 2A).
About 20 external adoral membranelles, two or three of
which are elongated and extend into oral cavity; each
external membranelle composed of three basal body rows,
with cilia up to 30 lm long, bases of external membran-
elles 17–20 lm long (Figs 2F and 3E). Usually one very
small internal membranelle near cytostome (Figs 2F and
3D, arrow, E, J). Endoral membrane lying near right inner
422 ª 2012 The Authors d Zoologica S
wall of oral cavity (Fig. 2F). Near inner side of each exter-
nal membranelle are four fibres that are associated with
each other and directed inward (Figs 2F and 3H, arrow-
heads). One fibre underneath peristomial rim, parallel to
last elongated external membranelle and associated with
internal membranelle (Fig. 3J, arrowhead).
Morphogenesis
Several divisional stages were observed. Stomatogenesis
commences with the appearance of an anarchic field of
basal bodies on the left-dorsal side anterior to K4 and K5
(Figs 2D, E and 3K,L, arrows). A bulge develops at each
end of the macronucleus from which the replication bands
originate (Figs 2D and 3L, arrowheads). The oral primor-
dium enlarges and the individual polykinetids differentiate
gradually from the inner towards the outer portion
(Fig. 2H). The endoral originates de novo (Fig. 2H,
arrow). With the development of polykinetids, the distal
and proximal portions of the adoral zone both curve
towards each other forming a tube perpendicular to the
cell surface. The polykinetids then perform an anticlock-
wise twist when viewed facing the opisth’s cytostome
(Figs 2I and 3M). The replication bands of the macronu-
cleus gradually migrate from both ends towards the mid-
region (Figs 2I and 3M, arrowheads).
The polykinetids continue to rotate (Figs 2J and 3N)
and the new oral apparatus gradually evaginates as the
diameter of the membranellar zone increases (Figs 2K and
3O). The somatic kineties are lengthened by the intrakin-
etal proliferation of basal bodies. The macronucleus begins
to expand (Figs 2K and 3O). When the rotation of polyki-
netids has finished, the membranellar zone forms a closed
circle, and the short posteriormost polykinetid migrates to
the inner margin of the cytostome to become the internal
membranelle (Figs 2L and 3P). The macronucleus con-
denses to form a longitudinally oriented ellipsoidal mass
(Figs 2L, arrow and 3P). Each somatic kinety splits into
two parts, one each for the opisthe and proter, respectively
(Fig. 2L, arrowheads).
Comparison with other populations
Rimostrombidium veniliae was first described by Montagnes
& Taylor (1994) based on a population from British
Columbia, Canada (Fig. 7A,B). It was subsequently rede-
scribed by Agatha & Riedel-Lorje (1998) based on a
German population (Fig. 7C,D). The Chinese population
corresponds well with both previous descriptions with
respect to the basic infraciliature and the general morphol-
ogy. There are some differences, however, with the Chinese
population having: (i) slightly fewer external membranelles
(20–21 vs. 22–23) than that reported by Montagnes & Tay-
lor (1994); (ii) a somewhat smaller cell size in protargol
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
A B C D
E F G H
M N O P
I J K L
Fig. 3 Photomicrographs of Rimostrombidium veniliae (Montagnes & Taylor 1994) Petz et al. 1995 from life (A–D) and after staining with
protargol (E–P). ––A–C. Lateral views showing different body shapes. ––D. Apical view; the external membranelles arranged like an iris
diaphragm, note the internal membranelle (arrow). ––E. Oral apparatus. ––F, G. Lateral (F) and aboral (G) views showing the somatic
kineties. ––H. Detail of the oral field, arrowheads mark the fibre systems associated with the external membrane. ––I. Detail of the
somatic kinety showing the dikinetids (arrowheads). ––J. Detail of the oral apparatus showing the single internal membranelle and the
fibre stretching from the internal membranelles (arrowhead). ––K, L. Early dividers showing the oral primordium (arrows) and
the replication bands in the macronucleus (arrowhead). ––M–O. Middle dividers showing the spiralled new polykinetids, arrow marks the
endoral membrane of the opisthe arrowhead notes the replication bands in the macronucleus. ––P. Late divider with the new oral
membranelles splayed out onto the cell surface and the macronucleus condensing to an ellipsoidal mass. EM, external membranelles; IM,
internal membranelle; Ma, macronucleus; K1–4, somatic kineties 1–4. Scale bars–30 lm.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
preparations (30–40 · 30–54 lm vs. 47–76 · 44–54 lm)
than that reported in the German population by Agatha &
Riedel-Lorje (1998) (Table 4A); (iii) all somatic kineties
extending to the posterior end of the cell, whereas in
the other populations, some somatic kineties are conspicu-
ously shortened (Montagnes & Taylor 1994; Agatha &
Riedel-Lorje 1998). Although we consider these to be
population-dependent variations, it is noteworthy that:
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
(i) the four ciliated kinetosomes on the inner side of each
external polykinetid reported in previous investigations
(Montagnes & Taylor 1994; Agatha & Riedel-Lorje 1998)
are here recognized as fibres associated with the external
polykinetid; (ii) the rod-like inclusion in the cell periphery
described by Agatha & Riedel-Lorje (1998) was found
neither in the Chinese population nor in the type specimens
even after careful re-examination. Furthermore, in their
41, 4, July 2012, pp 417–434 423
A B
C D
E
F
H
I J K L M
G
Fig. 4 Pelagostrobilidium paraepacrum sp. n. from life (A–D) and after staining with protargol (E–M). ––A. Lateral view of a representative
specimen, arrow marks the kinetal lip. ––B. The motionless cell with adoral membranelles forming a flame shape. ––C, D. Laterial views
showing different body shapes. ––E, F. Ventral (E) and dorsal (F) views of the same specimen showing the ciliary pattern and nuclear
apparatus. ––G. Oral apparatus. ––H. Nuclear apparatus. ––I, J. Early dividers showing the location of oral primordium (arrows). ––K, L.
Middle dividers with oral primordium rotated clockwise, arrowheads mark the endoral membrane originating de novo, arrow denotes the
replication bands in the macronucleus. ––M. Late divider, the new polykinetids form a closed circle and the macronucleus is condensed
(arrow). E, endoral membrane; EM, external membranelles; IM, internal membranelles; K1–6, somatic kineties 1–6; Ma, macronucleus;
Mi, micronuclei. Scale bars–40 lm.
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
species definition of R. veniliae, Montagnes & Taylor (1994)
reported a wide range of somatic kinety number, that is,
6–12, on average 10 (vs. usually 8, rarely 9, in the Chinese
population) (Table 4A). This degree of variation is beyond
what would normally be expected in a single population. It
is therefore possible that the original population contained
more than one morphologically similar species.
Comparison with related species
Considering its hemispherical body shape, Rimostrombidi-
um veniliae is similar to five congeners: R. orientale Song &
Bradbury 1998; R. undinum (Martin & Montagnes 1993)
Petz et al. 1995; R. sphaericum (Lynn & Montagnes 1988)
Petz & Foissner 1992; R. armeniensis (Zharikov 1987)
424 ª 2012 The Authors d Zoologica S
Foissner et al. 1999; and R. multinucleatum (Lynn & Mon-
tagnes 1988) Petz & Foissner 1992 (Fig. 7E–M;
Table 4A).
Rimostrombidium orientale (Fig. 7E,F; Table 4A) most
closely resembles R. veniliae. However, R. orientale can be
separated from latter by having: (i) a conspicuous frontal
protrusion (vs. absent); (ii) fewer (6 vs. 9 or 10 on average)
somatic kineties; and (iii) short somatic kineties that are
limited to the equatorial region (vs. longer somatic kin-
eties some of which extend nearly to the posterior pole)
(Song & Bradbury 1998).
Rimostrombidium veniliae is distinguished from R. undi-
num (Fig. 7G,H; Table 4A) by its larger body length after
protargol impregnation (30–76 lm vs. 16–29 lm), fewer
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
A B C ED
F G H I
J
P Q R
M N
O
S
K L
Fig. 5 Photomicrographs of Pelagostrobilidium paraepacrum sp. n. from life (A–G) and after staining with protargol (H–S). ––A–C. Lateral
views showing different body shapes. ––D. Lateral view of a motionless cell. ––E. Apical view showing the fully extended external
membranelles. ––F. Detail of the oral field showing the two internal membranelles (arrows). ––G. Cell surface showing the kinetal lip
(arrows). ––H. Detail of the oral apparatus showing the internal membranelle and the endoral membrane. ––I. Dorsal view showing the
micronuclei (arrows) lying within indentations of the macronucleus. ––J. Lateral view showing the somatic kineties. ––K, L. Ventral (K)
and dorsal (L) views of the same specimen showing the ciliary pattern. ––M, N. Early dividers showing the oral primordium (arrows).
––O–Q. Middle dividers with oral primordium rotated clockwise. Arrows note the replication bands in the macronucleus and arrowheads
mark the new endoral membrane. ––R–S. Later dividers showing the new oral membranelles and the macronucleus divided into two
parts. E, endoral membrane; IM, internal membranelles; K1–6, somatic kineties 1–6; Ma, macronucleus. Scale bars–40 lm.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
internal membranelles (1–2 vs. 4–6), and the appearance of
the somatic ciliature (basal bodies extremely closely spaced
vs. the basal bodies widely separated) (Martin & Montagnes
1993).
Rimostrombidium sphaericum (Fig. 7I,J; Table 4A) differs
from R. veniliae in having more external membranelles
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
(24–30 vs. 20–23) and in the absence (vs. presence) of
internal membranelles (Lynn & Montagnes 1988).
Rimostrombidium armeniensis (Fig. 7K; Table 4A) can be
distinguished from R. veniliae by having more somatic kineties
(12 vs. 9), a globular (vs. C-shaped) macronucleus and the pres-
ence (vs. absence) of a contractile vacuole (Zharikov 1987).
41, 4, July 2012, pp 417–434 425
A
B CL O P QN
G I J KHM
D E F
Fig. 6 Pelagostrobilidium minutum sp. n. from life (A, B, G–K) and after staining with protargol (C–F, L–Q). ––A. Ventral view. ––B.
Swimming traces. ––C. Oral apparatus. ––D, E.Ventral (D) and dorsal (E) views of the same specimen showing the ciliary pattern and
nuclear apparatus. ––F. Middle divider with the new polykinetids forming a closed circle, note the new endoral membrane (arrow) and
internal membranelle (arrowhead). ––G–K. Lateral views showing different body shapes. ––L. Left lateral view showing the spiralled
somatic kinety 2. ––M. Oral apparatus, arrowhead marks the endoral membrane. ––N. Detail of the oral field, arrow notes the single
internal membranelle. ––O, P. Ventral (O) and dorsal (P) views showing the ciliary pattern. ––Q. Late divider with the new oral
membranelles and the condensed macronucleus. E, endoral membrane; EM, external membranelles; IM, internal membranelle; K1–4,
somatic kineties 1–4; Ma, macronucleus; Mi, micronucleus. Scale bars–10 lm (A, D–F, L), 20 lm (G–K).
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
Rimostrombidium veniliae can be easily separated from
R. multinucleatum (Fig. 7L,M; Table 4A) by having only
one macronucleus (vs. 11 spherical macronuclei), 9 (vs. 5)
somatic kineties, and 20–23 (vs. 18–20) external membran-
elles (Lynn & Montagnes 1988).
Description of Pelagostrobilidium paraepacrum sp. n.
Genus Pelagostrobilidium Petz et al. 1995
Pelagostrobilidium paraepacrum sp. n. (Figs 4 and 5;
Table 3).
Deposition of slides. A protargol slide with the holotype
specimen (marked with a blue circle) is deposited in the
Natural History Museum, London, with registration num-
ber NHMUK 2010.7.14.1. One paratype slide is deposited
in the Laboratory of Protozoology, SCNU, with registra-
tion number WW08122202.
Etymology. The specific epithet ‘paraepacrum’ refers to
the superficial similarity in body shape between this spe-
cies and Pelagostrobilidium epacrum.
426 ª 2012 The Authors d Zoologica S
Type location. Coastal waters of Shenzhen (22�29¢N;
113�55¢E), Guangdong Province, China.
Diagnosis. Obconical Pelagostobilidium, about 65 · 50 lm
in vivo; posterior end tapered to a point; one to three mi-
cronuclei lying within dorsal indentations of macronu-
cleus; constantly six somatic kineties: kineties 1, 3, 4, 5
and 6 oriented longitudinally, kinety 2 spiralled around
left posterior area of cell and terminating posteriorly
below kineties 3 and 4; 30–32 external and two internal
membranelles.
Description
Cell size 50–80 · 45–65 lm in vivo, 61–81 · 52–71 lm
after protargol impregnation. Body shape variable, obconi-
cal to cordiform (Figs 4C,D and 5A–C). Anterior end
truncated, posterior region narrowed and tapered to a
point (Figs 4A,B and 5A–C). Length:width ratio about
3:2–1:1. Cell surface often ridged because of kinetal lips
(Fig. 5G). Lip of kinety 2 causing an oblique flattening of
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
A B C D E F
G H I J K L M
N O P Q R S T
U V W X Y Z
Fig. 7 Morphologically similar species in Rimostrombidium (A–M) and Pelagostrobilidium (N–Z). ––A, B. R. veniliae (from Montagnes &
Taylor 1994); ––C, D. R. veniliae (from Agatha & Riedel-Lorje 1998); ––E, F. R. orientale (from Song & Bradbury 1998); ––G, H.
R. undinum (from Martin & Montagnes 1993); ––I, J. R. sphaericum (from Lynn & Montagnes 1988); ––K. R. armeniensis (from Zharikov
1987); ––L, M. R. multinucleatum (from Lynn & Montagnes 1988); ––N. P. epacrum (from Lynn & Montagnes 1988); ––O, P. P. wilberti
(from Kuppers et al. 2006); ––Q, R. P. neptuni (from Montagnes & Taylor 1994); ––S, T. P. neptuni (from Agatha et al. 2005); ––U, V.
P. simile (from Song & Bradbury 1998); ––W, X. P. spirale (from Lynn & Montagnes 1988); ––Y, Z. P. sp. (from Ota & Taniguchi 2003).
Scale bars–20 lm.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
left posterior half, making cell asymmetrical (Figs 4A,
arrow and 5A). No frontal protrusion observed.
Cytoplasm colourless with numerous small globular
inclusions (2–4 lm across) that render cells almost dark
grey at low magnification (Fig. 4A,B). Food vacuoles
located in posterior portion of cell, 4–6 lm across, con-
taining some green algae (Figs 4A and 5A). Macronucleus
transversely oriented underneath external membranelles,
with numerous globular nucleoli 1–2 lm across (Fig. 4E,
F and H). Usually, two globular micronuclei, 1–2 lm in
diameter, each lying in a small, dorsally located indenta-
tion of macronucleus (Figs 4H and 5I, arrows). Neither
contractile vacuole nor cytopyge observed.
Swimming behaviour typical of strobilidiids, that is, cell
rotates while in stationary position with its anterior end
facing ahead interspersed by sudden ‘jumps’ of four to six
cell lengths. Jumps may be stimulated by physical agitation
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
or by changes in food concentration. In resting cells,
adoral membranelles are motionless and directed upwards
(Figs 4B and 5D).
Six somatic kineties each composed of closely spaced
monokinetids and cilia about 2–3 lm long (Figs 4E,F
and 5K,L). Apart from K2, somatic kineties commenced
about 5 lm below membranellar zone (Figs 4E,F and
5J–L). K1 and K6 longest (40–60 lm long), ventrally
positioned and extend longitudinally almost to posterior
pole (Figs 4E and 5K). K3 shortest (25–35 lm long),
extending longitudinally to mid-region of cell, terminat-
ing above posterior portion of K2 (Figs 4F and 5J,L).
K4 and K5 longer than K3 (35–45 lm long), extending
to posterior fifth of cell (Figs 4F and 5L). Length of
somatic kineties progressively increased clockwise from
K3 to K1 (when viewed aborally). K2 which starts in
anterior 2 ⁄ 5 of cell on left side, spirales around poster-
41, 4, July 2012, pp 417–434 427
Tab
le4
(A)
Mo
rph
olo
gica
lco
mp
aris
on
amo
ng
Rim
ostr
ombi
dium
spec
ies
wit
ha
hem
isp
her
ical
bo
dy
shap
e(B
)M
orp
ho
logi
cal
com
par
iso
nam
on
gP
elag
ostr
obil
idiu
msp
ecie
s
Spec
ies
Size
inl
m,
afte
r
prot
argo
lim
preg
natio
n
Exte
rnal
mem
bran
elle
s,N
o.
Inte
rnal
mem
bran
elle
s,N
o.
Som
atic
kine
ties,
No.
Mac
ronu
clei
,
No.
and
shap
eR
efer
ence
s
(A)
Rim
ostr
ombi
dium
veni
liae
29–4
1·
31–5
420
–21
18–
91,
C-s
hape
Pres
ent
stud
y
R.
veni
liae
14–4
0·
15–4
522
–23
1–2
ca.
101,
C-s
hape
Mon
tagn
es&
Tayl
or(1
994)
R.
veni
liae
47–7
6·
44–5
4ca
.20
1ca
.10
1,C
-sha
peA
gath
a&
Rie
del-L
orje
(199
8)
R.
orie
ntal
e21
–30
·21
–28
20–2
31
61,
C-s
hape
Song
&B
radb
ury
(199
8)
R.
undi
num
16–2
9·
15–2
321
–24
4–6
61,
C-s
hape
Mar
tin&
Mon
tagn
es(1
993)
R.
spha
eric
um40
–60
·40
–70
24–3
00
9–11
1,C
-sha
peLy
nn&
Mon
tagn
es(1
988)
R.
arm
enie
nsis
ca.
55–6
01ca
.31
–ca
.12
1,gl
obul
arZh
arik
ov(1
987)
R.
mul
tinuc
leat
um26
–32
·25
–35
18–2
00
511
,gl
obul
arLy
nn&
Mon
tagn
es(1
988)
(B)
Spec
ies
Size
2in
lm
Bod
ysh
ape
Exte
rnal
mem
bran
elle
s,N
o.
Inte
rnal
mem
bran
elle
s,N
o.
Som
atic
kine
ties,
No.
Arr
ange
men
tof
Kin
ety
2
Ref
eren
ce
Pela
gost
robi
lidiu
mep
acru
m60
–95
·35
–50
Con
ical
33–4
01
5Sp
iralle
dar
ound
body
and
post
erio
rpo
rtio
n
belo
wK
inet
ies
3an
d4
Lynn
&M
onta
gnes
(198
8)
P.ep
acru
m35
–55
·31
–47
Con
ical
30–3
12
5Sp
iralle
dar
ound
body
and
post
erio
rpo
rtio
n
belo
wK
inet
ies
3an
d4
Pett
igro
sso
(200
3)
P.m
inut
a16
–27
·12
–19
Con
ical
19–2
11
4Sp
iralle
dar
ound
body
and
post
erio
rlycl
ose
toK
inet
y3
Pres
ent
wor
k
P.ne
ptun
i40
–53
·40
–48
Subs
pher
ical
35–3
81–
25
Tran
sver
sely
arch
edan
dpo
ster
ior
port
ion
belo
wK
inet
ies
3an
d4
Aga
tha
etal
.(2
005)
P.pa
raep
acru
m61
–81
·52
–71
Con
ical
30–3
22
6Sp
iralle
dar
ound
body
and
post
erio
rpo
rtio
n
belo
wK
inet
y3
Pres
ent
wor
k
P.si
mile
36–5
6·
37–5
5Su
bsph
eric
al29
–31
15
Tran
sver
sely
arch
edan
dpo
ster
ior
port
ion
belo
wK
inet
ies
3,4
and
5
Song
&B
radb
ury
(199
8)
P.sp
irale
40–6
0·
40–5
2Su
bsph
eric
al33
–39
8–20
35
Tran
sver
sely
arch
edan
dpo
ster
ior
port
ion
belo
wK
inet
ies
3an
d4
Lynn
&M
onta
gnes
(198
8)
P.sp
.–
Subs
pher
ical
––
6Tr
ansv
erse
lyar
ched
and
post
erio
rpo
rtio
n
belo
wK
inet
ies
3,4
and
5
Ota
&Ta
nigu
chi
(200
3)
P.w
ilber
ti42
–77
·38
–53
Con
ical
25–3
22
6Sp
iralle
dan
dsh
ort,
post
erio
rlycl
ose
toK
3Ku
pper
set
al.
(200
6)
1B
ased
onin
vivo
spec
imen
s.2B
ased
onpr
otar
gol-i
mpr
egna
ted
spec
imen
s.3B
ased
ondi
ffer
ent
term
inol
ogy.
–,D
ata
unav
aila
ble.
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
428 ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
A B C
D E F
Fig. 8 Infraciliature of representative species in Strobilidiidae. ––
A, B. Rimostrombidium orientale (from Song & Bradbury 1998); ––
C, D. Strobilidium gyrans (from Deroux 1974), showing
numbering system for somatic kineties in choreotrichs; ––E, F.
Pelagostrobilidium neptuni (from Montagnes & Taylor 1994). Scale
bars–20 lm.
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
ior region of cell, and terminates near posterior pole
(Figs 4E, F and 5J–L).
About 30 external membranelles, the 3–5 most distal of
which become progressively elongate and extend into oral
cavity (Fig. 4G). Each membranelle composed of three
basal body rows, longest base about 15 lm. Cilia of
membranelles about 30 lm long in vivo, usually directed
upwards and extend slightly outward at top (Figs 4A and
5A,E). Two internal membranelles located within oral cav-
ity, right of elongated external membranelles (when viewed
dorsally), left internal membranelle with three-rowed kin-
eties, 5 lm long and extending to anterior rim of membra-
nellar zone; right internal membranelle with two-rowed
kineties and only 3 lm long (Figs 4G and 5F, arrows, H).
Endoral membrane single-rowed extending across right
side of peristomial field (Figs 4G and 5H). Oral cavity
funnel-shaped, acentric on anterior surface; some pharyn-
geal fibres extending posteriorly to halfway down cell
(Fig. 4E).
Morphogenesis
Several dividers were observed. Early dividers have a cune-
ate oral primordium on the left-dorsal side, above K2
(Figs 4I and 5M, arrows). With the development of basal
bodies, the polykinetids differentiate (Figs 4J and 5N,
arrows). Next, the oral primordium gradually rotates
clockwise to become inverted C-shaped while the inner
portions of the polykinetids begin to sink towards the cell
centre (Fig. 5O). Two replication bands form, one at each
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
end of the macronucleus (Fig. 5O, arrow). The endoral
originates de novo (Fig. 5O, arrowhead). With the rota-
tion of the oral primordium, the polykinetids perform an
anticlockwise spiral (Figs 4K and 5P). The distal end of
the oral primordium curves towards the proximal end to
form a closed circle and the membranellar zone forms a
funnel perpendicular to the cell surface (Figs 4L and 5Q).
Meanwhile, the new oral apparatus evaginates gradually
(Figs 4L and 5Q) and finally forms a closed circle
(Figs 4M and 5R,S). The replication bands migrate to the
mid-region of the macronucleus (Figs 4K and 5P, arrows)
and the endoral membrane lies transversely across the cen-
tre of the new oral zone (Figs 4K, L and 5P, arrowhead).
The somatic kineties lengthen by intrakinetal proliferation
of basal bodies. The macronucleus condenses into a trans-
versely oriented ellipsoidal mass (Figs 4M, arrow and 5R)
and then divides into two (Fig. 5S).
Comparison with related species
Agatha (1995) described a Rimostrombidium species from
the coast of northern Germany (Rimostrombidium sp.) that
corresponds closely with P. paraepacrum sp. n. with respect
to its infraciliature and general morphology. These are
therefore regarded as two populations of the same species.
To date, six species have been assigned to the genus Pel-
agostrobilidium: P. epacrum (Lynn & Montagnes 1988)
Agatha et al. 2005; P. neptuni (Montagnes & Taylor 1994)
Petz et al. 1995; P. simile Song & Bradbury 1998; P. spirale
(Lynn & Montagnes 1988) Petz et al. 1995; Pelagostrobilidium
sp. sensu Ota & Taniguchi (2003), and P. wilberti Kuppers
et al. 2006.
Pelagostrobilidium epacrum (Fig. 7N; Table 4B) most clo-
sely resembles P. paraepacrum sp. n. although it can be
separated from the latter by having: (i) a more slender cell
shape in protargol preparations (35–50 lm vs. 52–71 lm
in width); (ii) fewer somatic kineties (5 vs. 6); (iii) more
external membranelles (33–40 vs. 30–32); and (iv) fewer
internal membranelles (1 vs. 2). Although Pettigrosso
(2003) reported a population of P. epacrum with similar
numbers of external (30 or 31) and internal (two) mem-
branelles, it can easily be separated from P. paraepacrum
sp. n. by the possession of only 5 (vs. 6) somatic kineties
(Lynn & Montagnes 1988; Pettigrosso 2003).
With its conical body shape and six somatic kineties,
P. wilberti (Fig. 7O,P; Table 4B) also closely resembles
P. paraepacrum sp. n. However, it can be separated from
the latter by: (i) K2 conspicuously short and terminating
posteriorly close to K3 (vs. K2 longer than K3 and termi-
nating near posterior pole); (ii) contractile vacuole present
(vs. absent) (Kuppers et al. 2006).
Like P. paraepacrum sp. n., Pelagostrobilidium sp. sensu
Ota & Taniguchi (2003) has six somatic kineties
41, 4, July 2012, pp 417–434 429
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
(Fig. 7Y,Z; Table 4B); however, it can be separated from
the former by its transversely arched K2 which lies below
kineties 3–6 (vs. K2 spiralled around posterior body and
lying just below K3) and its subspherical (vs. conical) body
shape (Ota & Taniguchi 2003).
Pelagostrobilidium paraepacrum sp. n. can be easily sepa-
rated from P. neptuni, P. simile and P. spirale (Fig. 7Q–X;
Table 4B) by its conical (vs. subspherical) body shape, hav-
ing 6 (vs. 5) somatic kineties, and the position of K2
(arched transversely across the posterior region of the
body vs. spiralled around the posterior area of body, and
terminating near the posterior pole) (Lynn & Montagnes
1988; Montagnes & Taylor 1994; Petz et al. 1995; Song &
Bradbury 1998).
Description of Pelagostrobilidium minutum sp. n.
Genus Pelagostrobilidium Petz et al. 1995
Pelagostrobilidium minutum sp. n. (Fig. 6; Table 3).
Deposition of slides. A protargol slide with the holotype
specimen (marked with a blue circle) is deposited in the
Natural History Museum, London, with registration num-
ber NMHUK 2010.11.9.2. Three paratype slides are
deposited in the Laboratory of Protozoology, SCNU, with
registration numbers WW07110803-01, WW07110803-02
and WW07110803-03.
Etymology. The Latin word ‘minutum’ refers to the small
cell size of this species.
Type location. Coastal waters of Daya Bay (22�43¢N;
114�32¢E), Guangdong Province, China.
Diagnosis. Small Pelagostrobilidium about 25 · 20 lm in
vivo with tapered posterior end; one micronucleus located
in dorsal indentation of macronucleus; invariably four
somatic kineties: kinety 2 spiralled around left area of cell
and terminates near posterior pole; kinety 1 located below
kinety 2; kineties 3 and 4 slightly spiralled around
mid-body of right side; one internal and 19–21 external
membranelles.
Description
Cell size about 15–30 · 15–25 lm in vivo, 16–27 · 12–
19 lm after protargol impregnation. Cell shape variable,
global to cordiform, usually obconical (Fig. 6A and G–K).
Anterior end transversely truncated to slightly domed in
centre (Fig. 6A and G). Posterior region usually narrowed
with a tapered end, but sometimes rounded (Fig. 6G–K).
Widest slightly below adoral zone of membranelles. Kin-
etal lips conspicuous, spirally arranged (Fig. 6A and K).
Cells fragile and readily burst under cover glass. Cyto-
plasm colourless and opaque because of numerous lipid
430 ª 2012 The Authors d Zoologica S
droplets 1–2 lm across, and food vacuoles about 4 lm
across (Fig. 6A). Macronucleus transversely oriented under-
neath external membranelles, containing numerous globu-
lar nucleoli 1–2 lm across (Fig. 6D,E). One micronucleus
2 lm in diameter located in dorsal indentation of macro-
nucleus (Fig. 6E). Neither contractile vacuole nor cyto-
pyge observed.
Swimming behaviour typical of strobilidiids, that is, cell
rotates while in stationary position with its anterior end
facing ahead, interspersed by sudden ‘jumps’ of about five
cell lengths (Fig. 6B).
Four somatic kineties, each comprising a continuous
row of basal bodies, probably monokinetids, with cilia
about 2 lm long (Fig. 6D,E,O and P). Somatic kinety 2
(K2) longest, originating below oral cavity, spiralling anti-
clockwise (when viewed from oral aspect) around left pos-
terior region and terminating near posterior end of cell on
dorsal side (Fig. 6D,E and L); K1 shortest (about 6 lm
long), slightly curved, located in posterior half of
cell, below K2 (Fig. 6D and O); K3 and K4 10–12 lm
long, longitudinally oriented but slightly dextrally spi-
ralled, located in mid-region of cell (Fig. 6D,E,O and P).
About 20 external membranelles, four of which are
slightly elongated and extend into oral cavity (Fig. 6C and
N). Each membranelle probably 3-rowed with cilia about
10 lm long in vivo that are directed upwards with distal
ends bent outward slightly like a crown (Fig. 6A and G–I).
Bases of external membranes about 5 lm long. One inter-
nal membranelle lying on right of buccal cavity, close to
the longest external membranelle (Fig. 6C and N, arrow-
head). Endoral membrane extending across peristomial
field (Fig. 6C and M, arrowhead). Oral cavity rather shal-
low, located on anterior surface.
Morphogenesis
Stomatogenesis commences on the dorsal left side, above
K2 (Fig. 6F), and follows a similar pattern to that of
P. paraepacrum sp. n., that is, the oral primordium under-
goes a clockwise rotation forming a funnel and the distal
end of the oral primordium curves towards the proximal
end forming a closed circle (Fig. 6F). The endoral mem-
brane originates de novo and traverses the centre of the
new oral zone (Fig. 6F, arrow). The replication bands
migrate from both ends towards the mid-region of the
macronucleus, which gradually bulges to form a globular
mass (Fig. 6Q).
Comparison with related species
Pelagostrobilidium minutum sp. n. can clearly be separated
from its congeners by having: (i) a different arrangement of
somatic kineties 1, 3 and 4 with K3 and K4 slightly spiralled
(vs. longitudinally oriented) and K1 located below K2 (vs.
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
K1 to the right of K2); (ii) a smaller body size after protar-
gol impregnation (16–27 · 12–19 lm vs. larger than
30 · 30 lm); (iii) 4 (vs. >5) somatic kineties; and (iv) fewer
(19–21 vs. more than 29) external membranelles (Fig. 7N–
Z; Table 4B) (Lynn & Montagnes 1988; Montagnes &
Taylor 1994; Petz et al. 1995; Song & Bradbury 1998).
DiscussionEvolutionary relationships among strobilidiids
According to the evolution of ciliary patterns in choreo-
trichs proposed by Agatha & Struder-Kypke (2007), the
longitudinally oriented somatic kineties represent the ple-
siomorphic state. Of the three strobilidiid genera, only
Rimostrombidium has this feature (Fig. 8A,B); Strobilidium
and Pelagostrobilidium have spiralled or curved somatic kin-
eties which represent the apomorphic state (Fig. 8C–F).
However, previous phylogenetic analyses have consistently
shown that Rimostrombidium clusters with Strobilidium and
that Pelagostrobilidium branches basally, which appears to
disagree with the morphological analyses (Agatha &
Struder-Kypke 2007; Tsai et al. 2008; McManus & Katz
2009; Kim et al. 2010).
In our analyses, the SSrRNA gene sequence differ-
ences among the three newly sequenced species and
their congeners ranged from 5.09 to 8.93%. These find-
ings, along with the phylogenetic positions as revealed
in the SSrRNA gene trees, support the validity of these
three species. In addition, the two Rimostrombidium spe-
cies are located basally within the strobilidiid clade sug-
gesting that Rimostrombidium is representative of
ancestral forms in strobilidiids, which is consistent with
the morphological data. Moreover, the present study
reveals that R. veniliae has ciliated dikinetids, which is
recognized by Agatha & Struder-Kypke (2007) as more
ancestral than the ciliated monokinetids in other strobi-
lidiids. Although the two Rimostrombidium species do not
cluster together in our phylogenetic analyses, the possi-
bility that they cluster together was rejected by the AU
(P = 0.012) but supported by SH (P = 0.152) tests. The
monophyly of genus Rimostrombidium cannot be defini-
tively assessed at this point because too few species have
been sequenced.
Strobilidium is characterized by the spiralling of its cili-
ary rows in the posterior region of the cell (Fig. 8C,D). In
the SSrRNA gene trees, S. caudatum branches from the
strobilidiid clade after Rimostrombidium spp., whose ciliary
rows do not spiral posteriorly thus supporting the hypoth-
esis that the caudal spiral of somatic kineties represents
the apomorphic state (Agatha & Struder-Kypke 2007).
Although nodal support for the S. caudatum branch is low
in ML (33%) and MP (42%) trees and S. caudatum groups
with R. lacustris in the BI tree (data not shown) with low
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
support (0.66), the somatic kineties of R. lacustris are
slightly obliquely oriented (Foissner et al. 1988), which
indicates that it may represent an intermediate stage
between these two genera.
Unlike Strobilidium and Rimostrombidium, Pelagostrobilidi-
um has a curved K2 on the left side of the body
(Fig. 8E,F). The validity of the genus Pelagostrobilidium is
also supported by the SSrRNA gene analyses as the three
sequenced Pelagostrobilidium species form a clade in our
trees. Furthermore, the Pelagostrobilidium group branches
separately from the strobilidiid clade which is consistent
with the view that the curved K2 is a derived character, as
suggested by Agatha & Struder-Kypke (2007). In addition,
different curvatures of K2 seem to suggest different evolu-
tionary relationships as follows: (i) the transversely arched
K2 of P. neptuni, P. simile and P. spirale represents the
derived state in Pelagostrobilidium species; (ii) P. wilberti,
with its short and slightly curved K2, occupies an interme-
diate position between Rimostrombidium and Pelagostrobili-
dium, which was also suggested by Kuppers et al. (2006);
(iii) P. epacrum, P. paraepacrum sp. n. and P. minutum sp.
n. each has a spiralled K2 that extends to the posterior
end of the cell and thus probably evolved after P. wilberti
but before P. neptuni. However, this proposed evolutionary
sequence needs to be confirmed by further molecular phy-
logenetic analyses with gene sequence data for additional
Pelagostobilidium species.
Circumscription and definition of the genera
Rimostrombidium and Pelagostrobilidium
The patterns of the somatic ciliature in Pelagostrobilidium,
Rimostrombidium and Strobilidium can be used to separate
these genera from each other. Furthermore, their evolu-
tionary relationships based on their somatic ciliature are
largely supported by the SSrRNA gene sequence data.
These findings therefore indicate that the somatic ciliary
pattern is an important generic character within the family
Strobilidiidae as previously suggested (Petz & Foissner
1992; Petz et al. 1995; Agatha et al. 2005).
The genus Rimostrombidium. The original description of Ri-
mostrombidium was very brief, the main defining character
being ‘with ribbed cortex’ (Jankowski 1978). Petz & Foiss-
ner (1992) redefined the genus Strobilidium based on the
characteristic spiralling of the somatic ciliary rows in the
caudal region of the cell and transferred those strobilidiids
lacking such a caudal spiral into Rimostrombidium.
Although the ribbed cortex is not commonly found in
these species, no revised diagnosis of Rimostrombidium has
previously been proposed. Nevertheless, it is noteworthy
that the longitudinally oriented somatic kineties, which do
not extend to the posterior end of the cell, are commonly
41, 4, July 2012, pp 417–434 431
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
used to identify species within this genus (Petz & Foissner
1992; Agatha & Riedel-Lorje 1998; Song & Bradbury
1998; Foissner et al. 1999; Lei et al. 1999). An improved
diagnosis of Rimostrombidium is therefore here suggested.
Improved diagnosis of Rimostrombidium. Strobilidiidae with
longitudinal or slightly obliquely oriented somatic kineties
not extend to posterior pole. Oral primordium develops
left laterally or dorsally.
The genus Pelagostrobilidium. Petz et al. (1995) established
the genus Pelagostrobilidium based on its transversely
arched somatic kineties. Noting the weak curvature of kin-
ety 2, which is not transversely arched but instead spirals
along the left side of the cell in P. epacrum, Agatha et al.
(2005) improved the diagnosis of the genus Pelagostrobilidi-
um emphasizing the locations of certain kineties relative to
one another, for example, ‘kineties 3 and 4 posteriorly
shortened and abutting on curved kinety 2’, and included
some morphogenetic characters, for example, ‘oral primor-
dium develops left laterally anterior to kinety 2 and right
of kinety 3’. However, following the description of P. wil-
berti, Kuppers et al. (2006) further emended the diagnosis
of Pelagostrobilidium by supplying some additional charac-
ters such as ‘when kinety 2 is posteriorly shortened, kin-
eties 3 and 4 extend close to kinety 2; oral primordium
develops left laterally or dorsally anterior to kinety 2 and
left of kinety 3’. The locations of the somatic kineties
were, however, so strictly defined that some Pelagostrobili-
dium-like species cannot be assigned to this genus. Pelago-
strobilidium minutum sp. n., for example, is similar to other
Pelagostrobilidium spp. with K2 spiralling around the left
side of the body and the oral primordium located between
K2 and K3. Furthermore in the SSrRNA gene tree, P. min-
utum sp. n. is nested within the Pelagostrobilidium clade.
Nevertheless, its K3 and K4 are widely separated from K2
thus excluding it from Pelagostrobilidium according to the
genus diagnosis revised by Kuppers et al. (2006). This sug-
gests that the spiralled K2 should be regarded as a generic
character, whereas the locations of K3 and K4 should
probably be species level characters. Therefore, an
improved diagnosis of Pelagostrobilidium is suggested:
Improved diagnosis of Pelagostrobilidium. Strobilidiidae with
somatic kinety 2 spiralled around the left side of body. No
somatic kineties forming a spiral at posterior pole. Oral
primordium develops between kineties 2 and 3.
Remarks. Among the characters used for separating species
of Pelagostrobilidium are the locations of K3 and K4 and
the curvature of K2. Agatha & Riedel-Lorje (1998) rede-
scribed the poorly known species Rimostrombidium conicum
432 ª 2012 The Authors d Zoologica S
in which the curvature of K2 is less prominent, suggesting
that it represents an intermediate stage between Rimo-
strombidium and Pelagostrobilidium. Furthermore, in R. coni-
cum, the oral primordium develops between K2 and K3.
Therefore, this species is here transferred to the genus Pel-
agostrobilidium as P. conicum (Kahl, 1932) nov. comb [basi-
onym Rimostrombidium conicum].
Morphogenesis in choreotrichs
Morphogenesis has been documented for only four cho-
reotrich ciliates. Deroux (1974) reported the morphoge-
netic events of Strobilidium gyrans and pointed out that the
morphogenesis of the new peristome was confined to the
interior of cell by an invaginated cortical fold. Dale &
Lynn (1998) reported stomatogenesis in Strombidinopsis spi-
niferum and compared the stomatogenetic processes in
choreotrichs with those in oligotrichs. The morphogenesis
of Pelagostrobilidium neptuni was described in detail by
Agatha et al. (2005) who proposed that the position of the
new peristome in strobilidiids may depend on the shape
and length of kinety 2. Kuppers et al. (2006) described
morphogenesis in P. wilberti and proposed that the short-
ening of K3 and K4 abutting on the elongated K2 could
be a derived character in the genus Pelagostrobilidium.
In the present study, we describe for the first time sto-
matogenesis in Rimostrombidium. Compared with other
genera, stomatogenesis in Rimostrombidium most closely
resembles that in Strombidinopsis. In both cases, the new
adoral zone undergoes an anticlockwise rotation prior to
the differentiation of the polykinetids. Moreover, an oral
primordium tube is formed when the distal and proximal
portions of the adoral zone meet each other (Dale & Lynn
1998). By contrast, in Pelagostrobilidium and Strobilidium,
the anticlockwise rotation of the oral primordium takes
place concurrently with the differentiation of the polyki-
netids. In addition, an oral primordium funnel, with a
wide external portion and a narrow inner portion, is
formed rather than a tube (Deroux 1974; Petz & Foissner
1992; Agatha et al. 2005).
Considering the location of the oral primordium (OP) in
strobilidiids, in P. paraepacrum sp. n., P. minutum sp. n. and
P. wilberti, the OP develops between K2 and K3 (Kuppers
et al. 2006). This is consistent with the finding by Agatha
et al. (2005) that the location of the OP in strobilidiids is
dependent on the shape and length of K2. In other strobili-
diid species, however, the situation is different and ⁄ or vari-
able. In R. veniliae and R. brachykinetum, the OP develops
on the left-dorsal side anterior of K4 and K5 (Krainer
1995); in S. caudatum, the OP develops dorsally (Petz &
Foissner 1992); in R. orientale, the OP develops ventrally
(Song & Bradbury 1998); and in S. gyrans, the OP develops
between K1 and K2 (Deroux 1974). Therefore, the relative
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434
Weiwei Liu et al. d Phylogeny of three choreotrichous genera
positions of the OP and K2 appear to be related only in Pel-
agostrobilidium species, whereas in other strobilidiid genera,
they appear to be variable or species specific.
Classification of Lynnella
In our trees, Lynnella clusters with the choreotrichs which
together form a sister group to the oligotrichs. This result
does not concur with the previous analyses in which Lyn-
nella clusters with the oligotrichs rather than the choreo-
trichs (Liu et al. 2011). Furthermore, the possibility of a
relationship with the subclass Oligotrichia was not rejected
by AU (P = 0.088) and SH (P = 0.365) tests. However, the
support values for the Lynnella + Choreotrichia clade are
relatively weak (58% ML, 69% MP and 0.61 BI), which
indicates that the classification of Lynnella remains ambig-
uous. Considering the common characters shared with
both choreotrichs and oligotrichs, respectively, Lynnella
could be an intermediate form between these two and may
represent a new order and a new subclass of Spirotrichea.
More data are needed to confirm this possibility.
AcknowledgementsThis work was supported by the Natural Science Founda-
tion of China (project numbers: 41006098; 31071893).
Thanks are due to Mr. William Keel (Smithsonian Institu-
tion, National Museum of Natural History, USA) for
supplying the type material of Rimostrombidium veniliae
(Montagnes & Taylor 1994) Petz et al. 1995.
ReferencesAgatha, S. (1995). Taxonomie und Okologie ausgewahlter planktischer
und tychopelagischer Ciliaten (Protozoa, Ciliophora) des SpeicherkoogsDithmarschen und des Beltringharder Koogs. PhD Thesis,
Germany, University of Hamburg, 1–211.
Agatha, S. (2003). Redescription of Strombidinopsis minima
(Gruber, 1884) Lynn et al., 1991 (Protozoa, Ciliophora), with
notes on its ontogenesis and distribution. European Journal of
Protistology, 39, 233–244.
Agatha, S. (2004). A cladistic approach for the classification of
oligotrichid ciliates (Ciliophora: Spirotricha). Acta Protozoologica,
43, 201–217.
Agatha, S. (2011). Updated hypothesis on the evolution of
oligotrichid ciliates (Ciliophora, Spirotricha, Oligotrichida)
based on somatic ciliary patterns and ontogenetic data.
European Journal of Protistology, 47, 51–56.
Agatha, S. & Riedel-Lorje, J.C. (1998). Morphology,
infraciliature, and ecology of some strobilidiine ciliates
(Ciliophora, Oligotrichea) from coastal brackish water basins of
Germany. European Journal of Protistology, 34, 10–17.
Agatha, S. & Struder-Kypke, M.C. (2007). Phylogeny of the order
Choreotrichida (Ciliophora, Spirotricha, Oligotrichea) as
inferred from morphology, ultrastructure, ontogenesis, and
SSrRNA gene sequences. European Journal of Protistology, 43,
37–63.
ª 2012 The Authors d Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters,
Agatha, S., Struder-Kypke, M.C., Beran, A. & Lynn, D.H. (2005).
Pelagostrobilidium neptuni (Montagnes and Taylor, 1994) and
Strombidium biarmatum nov. spec. (Ciliophora, Oligotrichea):
phylogenetic position inferred from morphology, ontogenesis,
and gene sequence data. European Journal of Protistology, 41, 65–
83.
Dale, T. & Lynn, D.H. (1998). Stomatogenesis of the ciliate
genus Strombidinopsis with an improved description of
S. spiniferum and S. acuminatum. Journal of EukaryoticMicrobiology, 45, 210–217.
Deroux, G. (1974). Quelques precisions sur Strobilidium gyransSchewiakoff. Cahiers de Biologie Marine, 15, 571–588.
Eddy, S.R. (1998). rofile hidden Markov models. Bioinformatics,14, 55–763.
Foissner, W., Skogstad, A. & Pratt, J.R. (1988). Morphology and
infraciliature of Trochiliopsis australis n. sp., Pelagohalteria
viridis (Fromentel, 1876) n. g., n. comb., and Strobilidium lacustrisn. sp. (Protozoa, Ciliophora). Journal of Protozoology, 35, 489–497.
Foissner, W., Berger, H. & Schaumburg, J. (1999). Identificationand ecology of limnetic plankton ciliates. Informationsberichte des
Bayerischen. Landesamtes fur Wasserwirtschaft, 3 ⁄ 99.
Guindon, S. & Gascuel, O. (2003). A simple, fast and accurate
algorithm to estimate large phylogenies by maximum
likelihood. Systematic Biology, 52, 696–704.
Hall, T.A. (1999). BioEdit: a user-friendly biological sequence
alignment editor and analysis program for Windows
95 ⁄ 98 ⁄ NT. Nucleic Acids Symposium Series, 41, 95–98.
Huang, J., Yi, Z., Al-Farraj, S.A. & Song, W. (2010).
Phylogenetic positions and taxonomic assignments of the
systematically controversial genera, Spirotrachelostyla,
Uroleptopsis, and Tunicothrix (Protozoa, Ciliophora, Hypotricha)
based on small subunit rRNA gene sequences. Systematics andBiodiversity, 8, 409–416.
Jankowski, A.W. (1978). Revision of a system of class
Polyhymenophora (Spirotricha). Tezisky Doklady Zoologicheski
Institut Akademia Nauk SSSR, year 1978, 39–40 (in Russian).
Kim, Y., Kim, S.Y., Lee, W. & Choi, J.K. (2010). New
observations on the choreotrich ciliate Strombidinopsis acuminataFaure-Fremiet 1924, and comparison with Strombidinopsis jeokjo
Jeong et al., 2004. Journal of Eukaryotic Microbiology, 57, 48–55.
Krainer, K.H. (1995). Taxonomishce Untersuchungen an neuen und
wenig bekannten planktischen Ciliaten (Protozoa: Ciliophora) aus
Baggerseen in Osterreich. Lauterbornia, 21, 39–68.
Kuppers, G.C., Lopretto, E.C. & Claps, M.C. (2006).
Pelagostrobilidium wilberti sp. n. (Oligotrichea, Choreotrichida):
morphology and morphogenesis. Journal of EukaryoticMicrobiology, 53, 477–484.
Lei, Y., Xu, K. & Song, W. (1999). Free-living ciliates from
marine farming ponds. In W. Song, K. Xu, X. Shi, X. Hu, Y.
Lei, J. Wei, Z. Chen, X. Shi & M Wang (Ed) Progress inProtozoology. pp. 269–295. Qingdao: Qingdao Ocean University
Press, (in Chinese).
Liu, W., Yi, Z., Warren, A., Al-Rasheid, K.A.S., Al-Farraj, S.A.,
Lin, X. & Song, W. (2011). Taxonomy, morphology and
molecular systematics of a new oligotrich ciliate, Williophrya
maedai gen. nov., sp. nov., with redescriptions of Strombidiumbasimorphum and Pseudotontonia simplicidens (Protozoa,
Ciliophora, Oligotrichia). Systematics and Biodiversity, 3, 247–258.
41, 4, July 2012, pp 417–434 433
Phylogeny of three choreotrichous genera d Weiwei Liu et al.
Lynn, D.H. (2008). The Ciliated Protozoa. Characterization,Classification, and Guide to the Literature, 3rd edn. Dordrecht:
Springer.
Lynn, D.H. & Montagnes, D.J.S. (1988). Taxonomic descriptions
of some conspicuous species of strobilidiine ciliates (Ciliopora:
Choreotrichida) from the Isles of Shoals, Gulf of Maine.
Journal of the Marine Biological Association of the United Kingdom,
68, 639–658.
Martin, A.J. & Montagnes, D.J.S. (1993). Winter ciliates in a
British Columbian fjord: six new species and an analysis of ciliate
putative prey. Journal of Eukaryotic Microbiology, 40, 535–549.
McManus, G.B. & Katz, L.A. (2009). Molecular and morphological
methods for identifying plankton: what makes a successful
marriage? Journal of Plankton Research, 31, 1119–1129.
Medlin, L., Elwood, H.J., Stickel, S. & Sogin, M.L. (1988). The
characterization of enzymatically amplified eukaryotic 16S-like
rRNA-coding regions. Gene, 71, 491–499.
Montagnes, D.J.S. & Lynn, D.H. (1991). Taxonomy of
choreotrichs, the major marine planktonic ciliates, with
emphasis on the aloricate forms. Marine Microbial Food Webs, 5,
59–74.
Montagnes, D.J.S. & Taylor, F. (1994). The salient features of
five marine ciliates in the class Spirotrichea (Oligotrichia), with
notes on their culturing and behaviour. Journal of Eukaryotic
Microbiology, 41, 569–586.
Nylander, J.A. (2004). MrModeltest Ver.2. Distributed by the author.
Sweden: Department of Systematic Zoology, Evolutionary
Biology Centre, Uppsala University.
Ota, T. & Taniguchi, A. (2003). Conjugation of the marine
aloricate oligotrich Pelagostrobilidium (Ciliophora: Oligotrichia).
European Journal of Protistology, 39, 149–160.
Page, R.D.M. (1996). TREEVIEW: an application to view
phylogenetic trees on personal computers. Computer Application
Bioscience, 12, 357–358.
Pettigrosso, R.E. (2003). Planktonic ciliates Choreotrichida and
Strombidiida from the inner zone of Bahıa Blanca estuary,
Argentina. Iheringia, Serie Zoologia, 93, 117–126.
Petz, W. & Foissner, W. (1992). Morphology and morphogenesis
of Strobilidium caudatum (Fromentel), Meseres corlissi sp. n.,
Halteria grandinella (Muller), and Strombidium rehwaldi sp. n.,
and a proposed phylogenetic system for oligotrich ciliates
(Protozoa, Ciliophora). Journal of Protozoology, 39, 159–176.
Petz, W., Song, W. & Wilbert, N. (1995). Taxonomy and
ecology of the ciliate fauna (Protozoa, Ciliophora) in the
endopagial and pelagial of the Weddell Sea, Antarctica. Stapfia,
40, 1–223.
Ronquist, F. & Huelsenbeck, J.P. (2003). MRBAYES 3: bayesian
phylogenetic inference under mixed models. Bioinformatics, 19,
1572–1574.
434 ª 2012 The Authors d Zoologica S
Shimodaira, H. (2002). An approximately unbiased test of
phylogenetic tree selection. Systematic Biology, 51, 492–508.
Shimodaira, H. & Hasegawa, M. (2001). CONSEL: for assessing
the confidence of phylogenetic tree selection. Bioinformatics, 17,
1246–1247.
Song, W. & Bradbury, P. (1998). Studies on some new and rare
reported marine planktonic ciliates (Ciliophora: Oligotrichia)
from coastal waters in North China. Journal of the Marine
Biological Association of the United Kingdom, 78, 767–794.
Song, W. & Wilbert, N. (1995). Benthische ciliaten des
Sußwassers. In R. Rottger (Ed) Praktikum der Protozoologie. pp.
156–168. Stuttgart: G. Fischer.
Song, W., Zhu, M. & Chen, Z. (1999). Updating the systematics
of the planktonic oligotrichous ciliates (Ciliophora, Protozoa)
with description of ciliature patterns at generic level. Yellow Sea,
5, 77–85.
Swofford, D.L. (2002). PAUP*. Phylogenetic Analysis UsingParsimony (*and other methods). Version 4. Sunderland, MA:
Sinauer Associates.
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4:
molecular evolutionary genetics analysis (MEGA) software
version 4.0. Molecular Biology and Evolution, 24, 1596–1599.
Tsai, S.F., Xu, D., Chung, C.C. & Chiang, K.P. (2008).
Parastrombidinopsis minima sp. n. (Ciliophora: Oligotrichia) from
the coastal waters of northeastern Taiwan: morphology and
small subunit ribosomal DNA sequence. Journal of Eukaryotic
Microbiology, 55, 567–573.
Tsai, S.F., Chen, J.Y. & Chiang, K.P. (2010). Spirotontoniataiwanica sp. n. (Ciliophora: Oligotrichida) from the coastal
waters of northeastern Taiwan: morphology and nuclear small
subunit rDNA sequence. Journal of Eukaryotic Microbiology, 57,
429–434.
Xu, D., Warren, A. & Song, W. (2009). Oligotrichs. In W. Song,
A. Warren & X Hu (Eds) Free-living Ciliates in the Bohai andYellow Seas, China. pp. 307–351. Beijing: Science Press.
Yi, Z. & Song, W. (2011). Evolution of the order Urostylida
(Protozoa, Ciliophora): new hypotheses based on multi-gene
information and identification of localized incongruence. PLoSOne, 6, e17471.
Zhang, Q., Miao, M., Struder-Kypke, M.C., Al-Rasheid, K.A.S.,
Al-Farraj, S.A. & Song, W. (2011). Molecular evolution of
Cinetochilum and Sathrophilus (Protozoa, Ciliophora,
Oligohymenophorea), two genera of ciliates with morphological
affinities to scuticociliates. Zoologica Scripta, 40, 317–325.
Zharikov, V.V. (1987). A new species of fresh-water infusorians
(Oligotrichida) from waters of Armenia. Zoologicheskij Zhurnal,66, 930–932. (in Russian).
cripta ª 2012 The Norwegian Academy of Science and Letters, 41, 4, July 2012, pp 417–434