omics-based nanomedicine: the future of personalized medicine

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February 3, 2016 1 February 3, 2016 Prof. Dan Peer, Director , Laboratory of NanoMedicine, Dept. of Cell Research & Immunology and Dept. of Materials science & Engineering, Tel Aviv University, Israel Omics-Based Nanomedicine: the Future of Personalized Medicine

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Page 1: Omics-Based Nanomedicine: the Future of Personalized Medicine

February 3, 2016 1

February 3, 2016

Prof. Dan Peer,

Director , Laboratory of NanoMedicine,

Dept. of Cell Research & Immunology

and Dept. of Materials science & Engineering,

Tel Aviv University, Israel

Omics-Based Nanomedicine: the Future of Personalized Medicine

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Think different - Innovation

•Creativity

•Motivation

•Persistent

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How do we solve problems ?

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Breaking the Cycle

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Until today – “Blockbuster drugs” – everyone gets the same drug

Efficacy ?

~ 15-20% of patients at most – will benefit

New area – Make it Personal

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The ability to sequence the Genome (DNA),

Transcriptom (RNA) and to edit Genes

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Precision Medicine

Price in 1994: ~ $1B / One human Genome

Price in 2014: ~ $2000 / One human Genome

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Each person react differently to drugs

1. Genome (genes) 2. Environment

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What can we do with all the information from sequencing ?

Sequence patients with a particular

disease (e.g. Cancer)

Learn about the mutations and

genes that are overexpressed

Design and synthesis new drugs

based on RNA that fits the patient

profile

Design and synthesis of new

delivery systems

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• Can make any target “druggable”

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“Playing” GOD with genes– silence genes, up

regulating gene expression and editing

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RNA / DNA technologies is ready to go BUT the DELIVERY

of these molecules into specific cells types is not.

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Targeted(Delivery(to(Tumors(

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:components 3We need to have

The drug: RNA sequence

The delivery system that can package the drug

The targeting moiety : provide an address to the

delivery system (work like GPS) and bring it into the

diseased cell

The drug

The

delivery

system

Targeting

(GPS

system)

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Laboratory of NanoMedicine

Delivery systems and protein

engineering

Exome / transcriptome analysis

and Target Discovery & Validation

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Landscape of cancer genomics analyses

Tailored medicine

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Collaboration with Dept. of

Neurosurgery, Sheba

Hospital

Dr. Zvi R. Cohen

Localized RNAi Therapeutics of Chemoresistant

Grade IV Glioma Using Hyaluronan-Grafted Lipid-

Based Nanoparticles

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Looking for Glioma unique surface markers that can be used as GPS-like system

Cohen et al. ACS Nano 2015

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Laminar fluid flow

Controlled, time invariant mixing

Rapid mixing (3 ms-1): Timemix < Timeppt

Reaction volumes ~ 14 nL

Low energy input

Total flow rates from 4 mL/ min to 20 mL/min

Parallelized mixers enable seamless scale-up

Microfluidics Enables Exquisite Control Over Manufacturing Process – CMC of Nanoparticles packaging RNA molecules

EtOH + Lipids pH4 Buffer + RNA

Rapid & Controlled Mixing

(Chaotic Advection)

Mixer design by:

Stroock et al., Science

2002

Channel

Dimensions:

~100 µm

Staggered

Herringbone

Mixers (SHM)

RNA-Lipid

Nanoparticles

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Choosing the appropriate therapeutic target (the drug):

PLK1- cell cycle regulator

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Orthotopic GBM mouse model

Cohen et al. ACS Nano 2015

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Therapeutic gene silencing prolongs the survival of GBM-bearing mice.

Cohen et al. ACS Nano 2015

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How do we progress into the clinic ?

Sequence glioma patients (DNA and

RNA)

Learn about the mutations and

genes that are overexpressed

Design and synthesis new drugs

based on RNA that fits the patient

profile

Scale up the production of

Nanoparticles with RNAs

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Targeting Mantle Cell Lymphoma with Nanomedicines

•Aggressive form of B-cell malignancy.

•Low Incidence: 1-2/100,000 per year (6%-9% out of

total malignant lymphomas).

•Rate of men to women - 3 : 1

•Median age: 60

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• A chromosomal translocation - t(11;14)(q13;q32)

Strong

Promotor

Cyclin D1 overexpression

Chromosome 11

Chromosome 14

Chromosomal translocation

IGH

Cyclin D1

Genetic characterization of Mantle Cell Lymphoma (MCL)

Coller H.A, Nature Reviews Molecular Cell Biology , (2007).

Conventional Therapy: •Chemotherapy cocktails •anti-CD20 mAb (Rituximab) •Proteasome and BCR pathway inhibitors

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Weinstein S, et al. PLoS ONE (2012)

siRNA-mediated gene silencing highlights Cyclin D1 as a potential therapeutic target for MCL.

Screening - 510 sequences that targets both long and short transcripts. Bioinformatics, chemistry and electroporation

Cell cycle arrest

Apoptosis

DNA content

Cyclin D1 silencing

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Lipid Nanoparticle assembly

LNP Formulation

Component molar %

MC3 (Ionizable) 50 %

Cholesterol 38 %

DSPC 10 %

PEG-DMG 1.95%

PEG-Maleimide 0.05%

Rapid & Controlled Mixing

Mixer design by:

Stroock et al., Science 2002

Channel Dimensions:

~100 µm

siRNA pH 4

Lipids (EtOH)

NanoAssemblrTM

Cohen, Ramishetti, et al. ACS Nano 2015 Ramishetti , Kedmi et al, . ACS Nano 2015

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Mouse model of MCL

normal Cancer

Weinstein et al. PNAS 2016

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n = 10/group

**

αCD38-LNPs-siCyD1 induce therapeutic gene silencing in MCL model

Weinstein S. et al., PNAS 2016

Double blinded experiments were performed at CRO (Charles River)

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•An X linked neuromuscular disease characterised by rapidly

progressing muscle weakness and wasting, (WHO, 2013).

•Lack of one protein names Dystrophin

•DMD affects mostly males at a rate of 1 in 3,500 births

•DMD is the most severe and common type of muscular dystrophy

phases Four

.1Early phase (<6 yrs): clumsy, fall frequently, difficulty jumping or

running, enlarged muscles, contractures

.2Transitional Phase (ages 6-9): Trunk weakness, muscle

weakness, heart problems, fatigue

.3Loss of ambulation (ages 10-14): by 12 yrs most boys use a

powered wheelchair. Scoliosis due to constant sitting and back

weakness

.4Late stage (15+): life threatening heart and respiratory problems

more prevalent, dyspnea, oedema of the LL’s. Average age of

death is 19 yrs in untreated DMD but due to improvements in

clinical care in many centres the average age of death is the late

twenties or beyond

Duchenne Muscular Dystrophy - DMD

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Potential solution: modified mRNA

Bring in the missing protein

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Take home message

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Its all personal

Its all in the message (mRNA)

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