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mRNA post- transcriptional regulation

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Page 1: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mRNA post-transcriptional regulation

Page 2: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

synthesis folding and modifications

sortingdegradation

DNA

mRNA

mRNA post-transcriptional modifications

mRNA modifications

Page 3: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mRNA post-transcriptional modifications

mRNA splicingmRNA editingmiRNAs

Page 4: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mRNA splicing

Splicing

Page 5: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mRNA splicing

Page 6: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Alternative splicing

Blencowe, 2006. Cell

Page 7: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

AChE alternative splicing AChE alternative splicing during stress-situationsduring stress-situations

Page 8: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

1 2 3 4 5

AChE-EAChE-E

1 2 3 4 5

4’

AChE-RAChE-R

1 2 3 4 6

AChE-SAChE-S

1 2 3 4 5 6

4’

GRE500 bp

3’ alternative splicing

3’ mRNA3’ mRNAvariantsvariants

Page 9: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

AChE alternative splicing in stressAChE alternative splicing in stress

Page 10: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

AChE-R is upregulated during AChE-R is upregulated during stressstress

Meshorer et al. 2002, ScienceMeshorer et al., 2005, Mol Psy

Page 11: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Post traumatic stress disorderPost traumatic stress disorder

DSM-IV diagnostic criteria for PTSD

•The person experiences a traumatic event

•The traumatic event is persistently re-experienced

•Persistent avoidance of stimuli associated with the trauma

•Persistent symptoms of increased arousal

Model

Exposure to predator odor

Elevated maze

Startle response

Page 12: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Exposure to acutestressor

Post traumatic stress disorderPost traumatic stress disorder

Page 13: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

RNA editing

RNA editing involves the insertion/deletion or modification of single nucleotides in pre-mRNA molecules

The most widespread editing is A->I and C->U

Page 14: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

RNA editing

Keegan et al., 2001, Nat Gen Rev

Page 15: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

RNA editing consequences

Coding regions5’ and 3’ UTRsInitiation and stop codonsSplicing critical sites

Keegan et al., 2001, Nat Gen Rev

Page 16: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

A->I editing occurs predominantly in the CNS

Page 17: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

5-HT receptor editing

Toda et al. 2006. J. Pharm Sc.

Page 18: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

5-HT editing induces functional alterations

Herrick-Davis et al., 1999, J Neurochem

Page 19: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

5-HT receptor editing and depression

Serotonin has an important role in mood regulation

The action of many antidepressant (TCA, SRI, XTC, cocaine) drugs is mediated by enhancement of 5-HT transmission.

May low efficiency of 5-HT receptor, due to editing, be partially responsible of clinical depression?

Page 20: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

5-HT editing and depression

Iwamoto et al., 2005, Neurosc ResEnglander et al., 2005, JNS

Page 21: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Small RNA (sRNA) molecules hybridize mRNA impeding its translation

These molecules are processed and act with respective protein complexes to bind their target mRNAs

There are two precursor to sRNA: dsRNA and miRNA

RNA interference (RNAi)

miRNAdsRNA

RNA templated

polymerization

hybridization of overlapping sequences

endogenous transcripts

Page 22: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

siRNA maturation

A single miRNA is predicted to interact with hundreds of mRNA

targets

Page 23: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Amplification of silencing

Sijen et al. (2001) Cell

Page 24: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mIR-134 is expressed in the brain before synaptogenesis

Schratt et al., Science 2006

Page 25: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mIR-134 regulates spine size

Schratt et al., Science 2006

Page 26: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mIR-134 interacts with Limk1

Schratt et al., Science 2006

Page 27: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

mIR-134 suppresses Limk1 expression

Schratt et al., Science 2006

Page 28: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

Limk1 rescues miRNA-134 induced spine volume reduction

Schratt et al., Science 2006

Page 29: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications

BDNF controls miRNA-134 effect on neurite growth

Schratt et al., Science 2006

Page 30: MRNA post-transcriptional regulation. synthesisfolding and modifications sortingdegradation DNA mRNA mRNA post-transcriptional modifications mRNA modifications