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Molecular & Cellular Immunology Jonathan Irish, Ph.D.

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Page 1: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Molecular & Cellular Immunology

Jonathan Irish, Ph.D.

Page 2: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

1. How does antigen receptor signaling program diverse cellular

outcomes (death, division, differentiation)?

2. What mechanisms initiate and control antigen receptor signaling?

‘Goldilocks’ signaling.

3. How does antigen receptor signaling change during development?

4. What are the ‘upstream’ and ‘downstream’ events in antigen

receptor signaling?

5. What happens when antigen receptor signaling is dysregulated?

‘Big Picture’ Concepts and Questions

Immunology - M&IM 334 - Irish

Page 3: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Outline

BCR Signaling

In Development

FRET Technology &

Other Applications

BCR Signaling Events

And Regulation

Other Tools

& Background

Immunology - M&IM 334 - Irish

Page 4: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Heavy Chain Recombination

Surrogate

Light Chain:

Iga/Igb:

m Heavy Chain:

Class Switch,

Soluble mAbs:

pre-pro-B pro-B pre-B immature B mature B Common

Lymphoid Precursor

k/λ Light Chain:

plasma B

Light Chain Recombination

Fr. A Fr. B/C Fr. C’ Fr. D Fr. E Fr. F Hardy:

Compartment: Bone Marrow Periphery

Signaling Checkpoints

pre-BCR

Tonic Signal

BCR

clonal deletion, receptor editing,

clonal anergy

immature B

Antigen

T Cell Help,

Cytokines

BCR Expression & Signaling in Development

Irish Lab @ Vanderbilt Immunology - M&IM 334 - Irish

Page 5: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

• Immune cells undergo programmatic somatic translocations and

mutations, generating a diverse pool of cells for selection.

Cellular Evolution: Central to Cancer and Immunity

Küppers, Nat Rev Cancer 2005 Immunology - M&IM 334 - Irish

Page 6: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

B Cell Development

Küppers, Nat Rev Cancer 2005 Immunology - M&IM 334 - Irish

Page 7: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Continuous ‘Tonic’ BCR Survival Signaling

Rajewsky et al., Cell 1997, 2004, 2009 Immunology - M&IM 334 - Irish

Page 8: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

BCR Signaling Checkpoints in Development

Irish Lab @ Vanderbilt Immunology - M&IM 334 - Irish

Page 9: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

• Immune cells undergo programmatic somatic translocation and

mutation generating a diverse pool that undergoes selection.

• For both cancer and immunity, cells need to acquire new, heritable

cellular features.

• When immune developmental checkpoints are dysregulated we

see cancer, allergy, and autoimmunity.

• Examples of heritable cellular features

Cellular Evolution: Central to Immunity and Cancer

• Genetic

• Mutations (DNA basepair changes)

• Amplifications / deletions (copy number changes)

• Translocations (might include viruses, retrotransposons)

• Epigenetic

• Methylation / acetylation of DNA, histones

• Prions

• Infection by intracellular pathogens

• Reprogramming, as with iPS cells (Oct4 + Sox2 + Nanog + Klf4 +/- Myc)

Immunology - M&IM 334 - Irish

Page 10: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Outline

B Cell Receptor Signaling

In Development

FRET Technology &

Other Applications

BCR Signaling Events

And Regulation

Other Tools

& Background

Immunology - M&IM 334 - Irish

Page 11: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

B Cell Receptor Signaling

Irish Lab @ Vanderbilt Immunology - M&IM 334 - Irish

Page 12: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Regulation of BCR Signaling: ITAMs vs. ITIMs

Kurosaki, Nat Rev Immunol 2002 Immunology - M&IM 334 - Irish

Page 13: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

BCR Signaling ‘LEGO Blocks’

Kurosaki, Nat Rev Immunol 2002 Immunology - M&IM 334 - Irish

Page 14: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

B Cell Receptor Signaling

Kurosaki, Nat Rev Immunol 2002; Irish Lab @ Vanderbilt Immunology - M&IM 334 - Irish

SFKs: Src family kinases

Page 15: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

BCR Co-Receptors

Kurosaki, Nat Rev Immunol 2002 Immunology - M&IM 334 - Irish

Page 16: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Tetraspanin CD81 Enhances BCR/TCR Signaling

Levy and Shoham, Nat Rev Immunol 2005 Immunology - M&IM 334 - Irish

Regulation of antigen receptor signaling complexes

by the ‘tetraspanin web’ (CD81)

Page 17: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Lipid Rafts Help Control BCR Signaling

Kurosaki, Nat Rev Immunol 2002 Immunology - M&IM 334 - Irish

Page 18: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

ITIMs in Co-Receptors Fine Tune Signaling

Kurosaki, Nat Rev Immunol 2002 Immunology - M&IM 334 - Irish

Page 19: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

ITIMs in Co-Receptors Dampen Signaling

Nitschke, Curr Opin Immunol 2005 Immunology - M&IM 334 - Irish

Page 20: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Redox (H2O2) May Also Control BCR Signaling

Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish

Page 21: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Redox Signals May Provide BCR Signal Stability

Singh et al., Cell 2005 Immunology - M&IM 334 - Irish

Page 22: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Differential Regulation of IgG vs. IgM BCRs

Wakabayaski et al., Science 2002; Irish et al., J Immunol 2006 Immunology - M&IM 334 - Irish

Page 23: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

B Cell Receptor Signaling

Irish Lab @ Vanderbilt Immunology - M&IM 334 - Irish

Page 24: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Controlling BCR Signaling is Critical to Development

Khalil et al., Science 2012 Immunology - M&IM 334 - Irish

Page 25: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

What are consequences

of inappropriate antigen receptor signaling?

Immunology - M&IM 334 - Irish

Autoimmunity, allergy, cancer, and infections

Page 26: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

B Cell Lymphoma: BCR Selection Failure

Küppers, Nat Rev Cancer 2005 Immunology - M&IM 334 - Irish

Page 27: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

BCR Signaling as ‘Oncogenic’

Küppers, Nat Rev Cancer 2005 Immunology - M&IM 334 - Irish

Page 28: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

BCR Signaling Checkpoints in Healthy Development

Immunology - M&IM 334 - Irish

Page 29: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Immune Status Matters for Cancer

Schreiber et al., Science 2011 / Nature 2001 Immunology - M&IM 334 - Irish

Page 30: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Challenges in Making Effective Anti-tumor T Cells

Restifo, Dudley, & Rosenberg, Nat Rev Immunol 2012 Immunology - M&IM 334 - Irish

Page 31: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Outline

B Cell Receptor Signaling

In Development

FRET Technology &

Other Applications

BCR Signaling Events

And Regulation

Other Tools

& Background

Immunology - M&IM 334 - Irish

Page 32: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Förster resonance energy transfer (FRET)

Piston and Kremers, TRENDS in Biochem Sci 2007 Immunology - M&IM 334 - Irish

Example of FRET between CFP and YFP (Wavelength

vs. Absorption): a fusion protein containing CFP and YFP

excited at 440nm wavelength. The fluorescent emission

peak of CFP overlaps the excitation peak of YFP.

Because the two proteins are adjacent to each other, the

energy transfer is significant–a large proportion of the

energy from CFP is transferred to YFP and creates a

much larger YFP emission peak. http://en.wikipedia.org/wiki/F%C3%B6rster_resonance_energy_transfer

Page 33: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Förster resonance energy transfer (FRET)

Piston and Kremers, TRENDS in Biochem Sci 2007 Immunology - M&IM 334 - Irish

Page 34: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Viewing the Initiation of BCR Signaling

Tolar et al., Immunol Rev 2008 Immunology - M&IM 334 - Irish

Page 35: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Viewing the Initiation of BCR Signaling

Tolar et al., Immunol Rev 2008 Immunology - M&IM 334 - Irish

Page 36: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Viewing the Initiation of BCR Signaling

Tolar et al., Immunol Rev 2008 Immunology - M&IM 334 - Irish

Page 37: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Outline

B Cell Receptor Signaling

In Development

FRET Technology &

Other Applications

BCR Signaling Events

And Regulation

Other Tools

& Background

Immunology - M&IM 334 - Irish

Page 38: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Viewing the Initiation of BCR Signaling

Tolar et al., Immunol Rev 2008 Immunology - M&IM 334 - Irish

Page 39: Molecular & Cellular Immunology · Reth, Nature Immunol 2002; Rolli et al., Mol Cell 2002 Immunology - M&IM 334 - Irish Redox Signals May Provide BCR Signal Stability Singh et al.,

Viewing the Initiation of BCR Signaling

Tolar et al., Immunol Rev 2008 Immunology - M&IM 334 - Irish