model of mitochondrial bioenergetics and ca 2+ handling

1
Shivendra G. Tewari 1 , Ranjan K. Pradhan 1,2 , Jason N. Bazil 1,2 , Amadou K.S. Camara 3 , David F. Stowe 2,3 , Daniel A. Beard 1,2 , and Ranjan K. Dash 1,2 1 Biotechnology and Bioengineering Center, 2 Department of Physiology, and 3 Department of Anesthesiology, Medical College of Wisconsin, Milwaukee, WI Characterization of Different Modes of Ca Characterization of Different Modes of Ca 2+ 2+ Uptake under Uptake under Different Physiological Conditions in the Heart Mitochondria Different Physiological Conditions in the Heart Mitochondria Model of Mitochondrial Bioenergetics and Ca 2+ Handling The model is developed from the Beard’s model of mitochondrial respiratory system and oxidative phosphorylation (1) to account for the dynamics of mitochondrial Na + -Ca 2+ cycle and interaction between extra-matrix Mg 2+ and Ca 2 (2, 3), and additional pathway (fCU) for mitochondrial Ca 2+ uptake. The Ca 2+ sequestration model consists of four types of buffering proteins : BP1, BP2, BP3 and BP4 in the matrix. The integrated model includes the reactions at complex I, III, IV, and F0F1 ATPase of the electron transport system; the substrate transporters (ANT and PHT), cation transporters (sCU, fCU, NCE, NHE, CHE, and KHE), and passive K + and H + permeations across the mitochondrial inner membrane; and the passive substrate transport fluxes of adenines and phosphates across the mitochondrial outer membrane. Both uniporters sCU and fCU are inhibited by extra-matrix Mg 2+ . The flux through the TCA cycle producing NADH is expressed in terms of a phenomenological dehydrogenase flux. ANT: adenine nucleotide translocase, PHT: phosphate-hydrogen cotransporter, sCU: slow Ca 2+ uniporter, fCU: fast Ca 2+ uniporter, NCE: 3Na + /1Ca 2+ exchanger, NHE: Na + /H + exchanger, CHE: Ca 2+ /H + exchanger, and KHE: K + /H + exchanger. (1): Beard, PLoS Comput Biol 1(4): e36, 2005; (2): Dash and Beard, J Physiol 586(13): 3267-3285, 2008; Kinetic Mechanism of Ca 2+ Influx via Ca 2+ Uniporter with Mg 2+ Inhibition The uniporter T is assumed to have two binding sites for both Ca 2+ on either side of the inner mitochondrial membrane (IMM) and two distinct binding sites for Mg 2+ on the cytoplasmic side of the IMM. (A) Two Ca 2+ ions from the cytoplasmic side cooperatively bind to the uniporter in two steps to form the complex T2Ca 2+ e which then undergoes conformal changes to form the complex 2Ca 2+ x T. This complex goes through the reverse process where it dissociates in two steps to form the unbound uniporter T and two Ca 2+ ions in the matrix side. (B) A linear mixed-type scheme for Mg 2+ inhibition of Ca 2+ influx via the uniporter. The Mg 2+ interacts with the Ca 2+ only in the cytoplasmic side of the IMM. There is no Mg 2+ binding to uniporter T from the matrix side of the IMM . But in the matrix side, Ca 2+ binding is symmetrical to that of the cytoplasmic side as shown in this figure. The transport of Ca 2+ via the uniporter is limited by the rate constants k i and k o which are dependent on m , and modulated by extra-matrix free [Ca 2+ ], matrix free [Ca 2+ ] and extra-matrix free [Mg 2+ ]. The figure is reproduced from Pradhan et al., Biophysical J 101(9):2071-2081, 2011. Abstract / Summary Cardiac mitochondria can act as a significant Ca 2+ sink and shape the cytosolic Ca 2+ signals affecting various cellular processes such as energy metabolism and excitation-contraction coupling. However, mitochondrial Ca 2+ uptake mechanisms under different (patho)physio-logical conditions are not well understood. Characterization of these mechanisms is crucial in developing a quantitative understanding of Ca 2+ signals in the heart. For this purpose, we performed Ca 2+ uptake experiments in isolated guinea pig heart mitochondria under different experimental concentrations of extra-matrix Mg 2+ and Ca 2+ . The Na + free respiration buffer contained 1 mM EGTA with variable levels of Mg 2+ (0 mM–2 mM) and CaCl 2 (0.0 mM–0.6 mM) was added as a pulse after mitochondrial energization with substrate was pyruvic acid. Experimental data were analyzed using an integrated model of mitochondrial bioenergetics and cation handling. Our model analyses of the data reveal the existence of two Ca 2+ uniporters or Ca 2+ uptake pathways, namely a fast CU (fCU) and a slow CU (sCU), which exhibit contrasting differences in [Ca 2+ ] e and [Mg 2+ ] e sensitivities. fCU is a time- dependent high affinity Ca 2+ uniporter, while sCU is a time-independent low affinity Ca 2+ uniporter. Both uniporters are inhibited by extra-matrix Mg 2+ . The binding affinity of fCU for Mg 2+ is higher as compared to that of sCU. This work was supported by NIH/R01-HL095122. Matrix and Extra-matrix Free Ca 2+ Dynamics with Mg 2+ Inhibition Model Simulations of Fluxes through Two Types of Uniporter: sCU and fCU 2+ e Ca 2+ e T2Ca 2+ x 2Ca T o k i k T 2+ e TCa 2+ e Ca 2+ x Ca 2+ x Ca Ce,1 K Cx,2 K Cx,1 K Ce,2 K 2+ x Ca T 2+ e TM g 2+ 2+ e e TM g Ca Ce,1 K Ce,2 K 2+ e Ca 2+ e Ca 2+ e T2Ca T 2+ e TCa 2+ e Ca 2+ e Ca Ce,1 K Ce,2 K 2+ e Ca 2 Ce,1 K 2 Ce,2 K 2+ 2+ e e T2M g Ca 2+ 2+ e e T2M g 2Ca 2+ e Ca 2+ e T2M g 2+ 2+ e e TM g 2Ca Me,1 K M e,2 K M e,1 K 2 Me,1 K M e,2 K 2 Me,2 K 2+ e Mg 2+ e Mg 2+ e Mg 2+ e Mg 2+ e Mg 2+ e Mg 0 0 e e e m x x x m 0 0 i i e m o o x m exp( ); exp( ) exp( 2 ); exp( 2 ) K K K K k k k k (A ) (B ) Ca m m Z F RT Comparison of model simulations to data on the dynamics of buffer (A) and matrix (B, C, D) free [Ca 2+ ] in the absence ([Mg 2+ ] e = 0) and presence of 0.5 and 1 mM Mg 2+ in Na + free buffer mediums. Adding CaCl 2 (0, 0.25, 0.5, 0.6 mM) caused a dose-dependent increase in [Ca 2+ ] m , consistent with the increase in [Ca 2+ ] e . Two different phase of uptake (slow and fast ) were observed during and after adding CaCl 2 . The slow phase of Ca 2+ uptake was through the low affinity Ca 2+ uniporter and the fast phase was through the high affinity Ca 2+ uniporter. Model accurately describes the data for all Mg 2+ levels Type Definition Value Units BP1 [B Ca,1 ] Total protein concentration 30.0 mM K Ca,1 Ca 2+ binding constant 6.00 µM n 1 Number of binding sites 1 - BP2 [B Ca,2 ] Total protein concentration 35.0 mM K Ca,2 Ca 2+ binding constant 5.9 µM n 2 Number of binding sites 2 - BP3 [B Ca,3 ] Total protein concentration 40.0 mM K Ca,3 Ca 2+ binding constant 5.8 µM n 3 Number of binding sites 3 - BP4 [B Ca,4 ] Total protein concentration 45.0 mM K Ca,4 Ca 2+ binding constant 5.7 µM n 4 Number of binding sites 4 - 1 2 2 4 , 2 2 , , [ ] [ ] 1 1[ ]/ i i i i n i Ca i Ca n n n i Ca i Ca i n Ca B K Ca K Ca 2+ Buffering Power (β Ca ) is a manifestation of the Ca 2+ sequestration system. For every Ca 2+ ion entering (or leaving) the mitochondria, only a fraction remain free. This can be written as: 2 [ ]/[ ] Ca x x TCa Ca For highly buffered conditions, β Ca is large. Mathematically: Table 1. Buffering Model Parameters Ca 2+ Sequestration System in Mitochondrial Matrix Simulations of slow (time-independent ) and fast (time-dependent) Ca 2+ uniporter fluxes for three levels of extra-matrix MgCl 2 and four levels of extra- matrix CaCl 2 . NCE was inactivated. (A,B,C): Dynamics of slow, low affinity uniporter fluxes (sCU) in response to added CaCl 2 (0, 0.25, 0.5, 0.6 mM), in the absence (A) and presence of 0.5 mM MgCl 2 (B) and 1 mM MgCl 2 (C) added to the buffer medium. (D,E,F): Dynamics of fast, high affinity uniporter fluxes (sCU) in response to added CaCl 2 (0, 0.25, 0.5, 0.6 mM), in the absence (A) and presence of 0.5 mM MgCl 2 (B) and 1 mM MgCl 2 (C) added to the buffer medium. In all the experiments and simulations, MgCl 2 was added at t = 0 s and CaCl was added at t = COQ QH 2 CO Q NADH NAD + C(ox) 3+ C(red) 2+ H + H + C(ox) 3+ H + ADP 3- + PI 2- ATP 4- ATP 4- ADP 3- ADP 3- ANT F o F 1 CIV CIII CI H + PIHt H + H 2 PO 4 - Ca 2+ Na + NCE Ca 2+ H + CHE Na + H + NHE H + H + leak K + H + KHE Ca 2+ sCU Ca 2+ fCU Ca 2+ RaM - Mg 2+ - Mg 2+ Ca 2+ BP4 Ca 2+ sequestration system s BP1 BP3 BP2 m inner m itochondrialm embrane Extra-m atrix space m atrix space Blue: 0 mM CaCl 2 Green: 0.25 mM CaCl 2 Red : 0.5 mM CaCl 2 Pink: 0.6 mM CaCl 2 (C) (A) (D) (B) (A) (D) (B) (E) (C) (F)

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(B). (A). Characterization of Different Modes of Ca 2+ Uptake under Different Physiological Conditions in the Heart Mitochondria. Shivendra G. Tewari 1 , Ranjan K. Pradhan 1,2 , Jason N. Bazil 1,2 , Amadou K.S. Camara 3 , David F. Stowe 2,3 , Daniel A. Beard 1,2 , and Ranjan K. Dash 1,2 - PowerPoint PPT Presentation

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Page 1: Model of Mitochondrial Bioenergetics and Ca 2+  Handling

Shivendra G. Tewari1, Ranjan K. Pradhan1,2, Jason N. Bazil1,2, Amadou K.S. Camara3, David F. Stowe2,3, Daniel A. Beard1,2, and Ranjan K. Dash1,2

1Biotechnology and Bioengineering Center, 2Department of Physiology, and 3Department of Anesthesiology, Medical College of Wisconsin, Milwaukee, WI

Characterization of Different Modes of CaCharacterization of Different Modes of Ca2+2+ Uptake under Different Physiological Uptake under Different Physiological Conditions in the Heart MitochondriaConditions in the Heart Mitochondria

Model of Mitochondrial Bioenergetics and Ca2+ Handling

The model is developed from the Beard’s model of mitochondrial respiratory system and oxidative phosphorylation (1) to account for the dynamics of mitochondrial Na+-Ca2+ cycle and interaction between extra-matrix Mg2+ and Ca2 (2, 3), and additional pathway (fCU) for mitochondrial Ca2+ uptake. The Ca2+ sequestration model consists of four types of buffering proteins : BP1, BP2, BP3 and BP4 in the matrix. The integrated model includes the reactions at complex I, III, IV, and F0F1 ATPase of the electron transport system; the substrate transporters (ANT and PHT), cation transporters (sCU, fCU, NCE, NHE, CHE, and KHE), and passive K+ and H+ permeations across the mitochondrial inner membrane; and the passive substrate transport fluxes of adenines and phosphates across the mitochondrial outer membrane. Both uniporters sCU and fCU are inhibited by extra-matrix Mg2+. The flux through the TCA cycle producing NADH is expressed in terms of a phenomenological dehydrogenase flux. ANT: adenine nucleotide translocase, PHT: phosphate-hydrogen cotransporter, sCU: slow Ca2+ uniporter, fCU: fast Ca2+ uniporter, NCE: 3Na+/1Ca2+ exchanger, NHE: Na+/H+ exchanger, CHE: Ca2+/H+ exchanger, and KHE: K+/H+ exchanger.

(1): Beard, PLoS Comput Biol 1(4): e36, 2005; (2): Dash and Beard, J Physiol 586(13): 3267-3285, 2008;

(3): Pradhan et al., Biophysical J 101(9):2071-2081, 2011.

Kinetic Mechanism of Ca2+ Influx via Ca2+ Uniporter with Mg2+ Inhibition

The uniporter T is assumed to have two binding sites for both Ca2+ on either side of the inner mitochondrial membrane (IMM) and two distinct binding sites for Mg2+ on the cytoplasmic side of the IMM. (A) Two Ca2+ ions from the cytoplasmic side cooperatively bind to the uniporter in two steps to form the complex T2Ca2+

e which

then undergoes conformal changes to form the complex 2Ca2+xT. This complex goes through the reverse

process where it dissociates in two steps to form the unbound uniporter T and two Ca2+ ions in the matrix side. (B) A linear mixed-type scheme for Mg2+ inhibition of Ca2+ influx via the uniporter. The Mg2+ interacts with the Ca2+ only in the cytoplasmic side of the IMM. There is no Mg2+ binding to uniporter T from the matrix side of the IMM. But in the matrix side, Ca2+ binding is symmetrical to that of the cytoplasmic side as shown in this figure. The transport of Ca2+ via the uniporter is limited by the rate constants ki and ko which are dependent on

m, and modulated by extra-matrix free [Ca2+], matrix free [Ca2+] and extra-matrix free [Mg2+].

The figure is reproduced from Pradhan et al., Biophysical J 101(9):2071-2081, 2011.

Abstract / Summary

Cardiac mitochondria can act as a significant Ca2+ sink and shape the cytosolic Ca2+ signals affecting various cellular processes such as energy metabolism and excitation-contraction coupling. However, mitochondrial Ca2+ uptake mechanisms under different (patho)physio-logical conditions are not well understood. Characterization of these mechanisms is crucial in developing a quantitative understanding of Ca2+ signals in the heart. For this purpose, we performed Ca2+ uptake experiments in isolated guinea pig heart mitochondria under different experimental concentrations of extra-matrix Mg2+ and Ca2+. The Na+ free respiration buffer contained 1 mM EGTA with variable levels of Mg2+ (0 mM–2 mM) and CaCl2 (0.0 mM–0.6 mM)

was added as a pulse after mitochondrial energization with substrate was pyruvic acid. Experimental data were analyzed using an integrated model of mitochondrial bioenergetics and cation handling. Our model analyses of the data reveal the existence of two Ca2+ uniporters or Ca2+ uptake pathways, namely a fast CU (fCU) and a slow CU (sCU), which exhibit contrasting differences in [Ca2+]e and [Mg2+]e sensitivities. fCU is a time-dependent

high affinity Ca2+ uniporter, while sCU is a time-independent low affinity Ca2+ uniporter. Both uniporters are inhibited by extra-matrix Mg2+. The binding affinity of fCU for Mg2+ is higher as compared to that of sCU. This work was supported by NIH/R01-HL095122.

Matrix and Extra-matrix Free Ca2+ Dynamics with Mg2+ Inhibition Model Simulations of Fluxes through Two Types of Uniporter: sCU and fCU

2+eCa

2+eT2Ca

2+x2Ca T

ok ik T

2+eTCa

2+eCa

2+xCa 2+

xCa

Ce,1K

Cx,2K Cx,1K

Ce,2K

2+xCa T

2+eTMg

2+ 2+e eTMg Ca

Ce,1K Ce,2K

2+eCa

2+eCa

2+eT2Ca T

2+eTCa 2+

eCa 2+eCa

Ce,1K

Ce,2K

2+eCa

2Ce,1K

2Ce,2K

2+ 2+e eT2Mg Ca

2+ 2+e eT2Mg 2Ca

2+eCa

2+eT2Mg

2+ 2+e eTMg 2Ca

Me,1K

Me,2K

Me,1K 2Me,1K

Me,2K 2

Me,2K

2+eMg

2+eMg

2+eMg

2+eMg

2+eMg

2+eMg

0 0e e e m x x x m

0 0i i e m o o x m

exp( ); exp( )

exp( 2 ); exp( 2 )

K K K K

k k k k

(A) (B)

Ca mm

Z F

RT

Comparison of model simulations to data on the dynamics of buffer (A) and matrix (B, C, D) free [Ca2+] in the absence ([Mg2+]e

= 0) and presence of 0.5 and 1 mM Mg2+ in Na+ free buffer mediums. Adding CaCl2 (0, 0.25, 0.5,

0.6 mM) caused a dose-dependent increase in [Ca2+]m, consistent with the increase in [Ca2+]e. Two different

phase of uptake (slow and fast) were observed during and after adding CaCl2. The slow phase of Ca2+ uptake

was through the low affinity Ca2+ uniporter and the fast phase was through the high affinity Ca2+ uniporter. Model accurately describes the data for all Mg2+ levels and Mg2+ reduces [Ca2+]m. CaCl2 was added at t = 120 s.

Type Definition Value UnitsBP1

[BCa,1] Total protein concentration 30.0 mM

KCa,1 Ca2+ binding constant 6.00 µM

n1 Number of binding sites 1 -

BP2

[BCa,2] Total protein concentration 35.0 mM

KCa,2 Ca2+ binding constant 5.9 µM

n2 Number of binding sites 2 -

BP3

[BCa,3] Total protein concentration 40.0 mM

KCa,3 Ca2+ binding constant 5.8 µM

n3 Number of binding sites 3 -

BP4

[BCa,4] Total protein concentration 45.0 mM

KCa,4 Ca2+ binding constant 5.7 µM

n4 Number of binding sites 4 -

12 24

,22

, ,

[ ] [ ]1

1 [ ] /

i

i i i

ni Ca i

Can n n

iCa i Ca i

n Ca B

K Ca K

Ca2+ Buffering Power (βCa) is a manifestation of the Ca2+ sequestration system. For every Ca2+ ion entering (or leaving) the mitochondria, only a fraction remain free. This can be written as:

2[ ] / [ ]Ca x xTCa Ca

For highly buffered conditions, βCa is large. Mathematically:

Table 1. Buffering Model Parameters

Ca2+ Sequestration System in Mitochondrial Matrix

Simulations of slow (time-independent) and fast (time-dependent) Ca2+ uniporter fluxes for three levels of extra-matrix MgCl2 and four levels of extra-matrix CaCl2. NCE was inactivated.

(A,B,C): Dynamics of slow, low affinity uniporter fluxes (sCU) in response to added CaCl2 (0, 0.25, 0.5, 0.6 mM), in the absence (A) and presence of 0.5 mM MgCl2 (B) and 1 mM MgCl2 (C) added to the buffer medium.

(D,E,F): Dynamics of fast, high affinity uniporter fluxes (sCU) in response to added CaCl2 (0, 0.25, 0.5, 0.6 mM), in the absence (A) and presence of 0.5 mM MgCl2 (B) and 1 mM MgCl2 (C) added to the buffer medium.

In all the experiments and simulations, MgCl2 was added at t = 0 s and CaCl2 was added at t = 120 s. Ca2+ fluxes by both the slow and fast uniporters were obser-ved to be inhibited by extra-matrix Mg2+. In addition, the fast uniporter is slowly inactivating depending on the matrix free [Ca2+].

COQ QH2 COQ

NADH NAD+

C(ox)3+ C(red)2+H+ H+

C(ox)3+H+

ADP3-

+ PI2-ATP4-

ATP4- ADP3-

ADP3-

AN

T

Fo F

1

CIV

CIII

CI

H+

PIHt

H+ H2PO4-

Ca2+

Na+NCE

Ca2+

H+CHE

Na+

H+NHE

H+H+ leak

K+

H+KHE

Ca2+

sCU

Ca2+

fCU

Ca2+

RaM

-Mg2+

-Mg2+

Ca2+

BP4

Ca2+ sequestration systems

BP1

BP3

BP2

m

inn

er m

ito

cho

nd

rial

mem

bra

ne

Extra-matrix space

matrix space

Blue: 0 mM CaCl2

Green: 0.25 mM CaCl2

Red : 0.5 mM CaCl2

Pink: 0.6 mM CaCl2

(C)

(A)

(D)

(B)

(A) (D)

(B) (E)

(C) (F)