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Page 1: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Microstructure and Materials Informatics

University of Florida - May 20th 2013

Krishna Rajan

Page 2: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Microstructural Data and Information Role of informatics and microstructure Microscopy and informatics - SEM - TEM - APT Summary

Outline

Krishna Rajan: Iowa State University

Page 3: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

1. “Crystallographic Evolution in Directionally Solidified Microstructures” J. Trogolo and

K.Rajan in Microstructure Evolution: Characterization and Modeling, pp.39-47 eds. J. Dantzig and S. Marsh, TMS ,Warrendale (1998)

2. Microtexture and Anisotropy in Wire Drawn Copper”, R.Petkie and K.Rajan Materials Science and Engineering A 257 185-197 ( 1998).

3. Rodrigues-Frank Representations of Crystallographic Texture in Electron Backscatter Diffraction in Materials Science Eds. Schwartz, A.J.; Kumar, M.; Adams, B.L pp. 39-50 Kluwer Academic NY (2000).

4. Refining Spatial Distribution Maps for Atom Probe Tomography via Data Dimensionality Reduction Methods". S.K.Suram and K.Rajan ; Journal of Microscopy and Microanalysis 18 , 941-952 (2012)

5. "A Graph-Theoretic Approach for Characterization of Precipitates in Alloys from Atom Probe Tomography data S. Samudrala, O. Wodo, S. K. Suram, S. Broderick, K. Rajan, B. Ganapathysubramanian, " Computational Material Science, vol. , (in press-2013)

6. Data Mining for Isotope Discrimination in Atom Probe Tomography: S.R. Broderick, A. Bryden, S.K. Suram and K. Rajan : Ultramicroscopy (in press - , http://dx.doi.org/10.1016/j.ultramic.2013.02.001 -2013)

References

Krishna Rajan: Iowa State University

Page 4: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Multidimensional

Microstructural characteristics

Features controlling microstructure –property relationships

Challenge:

To construct Robust Correlations

between microstructure, chemistry, processing and properties

Methods:

Data analysis

•Statistical learning

Materials modeling

•Electronic structure

•Microstructure

•Continuum property

Informatics

Materials functionality= F ( x1 , x2 , x3 , x4 , x5 , x6 , x7 , x8 ……)

Krishna Rajan: Iowa State University

Page 5: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Signal and Spatial Domains

Krishna Rajan: Iowa State University

Page 6: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Signal and Spatial Domains

Krishna Rajan: Iowa State University

Page 7: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

N. Bonnet J. Microscopy 190 2-18 (1997)

G. Mobus, R. Schweinfest, T. Gemming, T. Wagner and M. Ruhle J. Microscopy vol 190 , pts 1 / 2 April / May 1998 , pp. 109-130

Data Cube

Krishna Rajan: Iowa State University

Page 8: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Krishna Rajan: Iowa State University

Mechanical property- microstructure data cube

Page 9: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Mechanical property- microstructure data cube

Krishna Rajan: Iowa State University

Page 10: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Mechanical property- microstructure data cube- outlier detection

Krishna Rajan: Iowa State University

Page 11: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Mechanical property- microstructure data cube- outlier detection

Krishna Rajan: Iowa State University

Page 12: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Mechanical property- microstructure data cube- outlier detection

Krishna Rajan: Iowa State University

Page 13: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Krishna Rajan: Iowa State University

Informatics guided imaging: where to look

“Crystallographic Evolution in Directionally Solidified Microstructures” J.

Trogolo and K.Rajan in Microstructure Evolution: Characterization and Modeling, pp.39-47 eds. J. Dantzig and S. Marsh, TMS ,Warrendale (1998

Page 14: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

N data channels

Energy loss

DE

E

DE

Extracted image spectrum

K.Kelton, X.Li and K. Rajan J. Non-Crystalline Solids (2005)

Al-RE-Ni Glass

x

y

Krishna Rajan

Chemistry- microstructure data cube- correlation imaging

Krishna Rajan: Iowa State University

Page 15: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Atom Probe : imaging modalities

Krishna Rajan: Iowa State University

Page 16: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Atom Probe : a multidimensional problem

Krishna Rajan: Iowa State University

Page 17: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Chemical Noise Chemical Noise f(Crystal structure, pulse energy, pulse fraction, surface diffusion, specimen geometry …) .

APT

Spatial Noise in APT

Spatial Noise f(Crystal structure, dhkl , missing data, local magnification effects, reconstruction errors, pulse energy, pulse fraction, surface diffusion …)

Phenomenological relationships between most of these parameters and their effect on spatial/chemical noise are unknown. Thus, data driven treatment is necessary for analysis of noise in APT data.

Signal/ Noise enhancement

Krishna Rajan: Iowa State University

Page 18: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

PCA

NLDR

Geometric

Distance

Euclidian Geodesic

(eg. IsoMap)

Other

(eg. KPCA)

Topology

PDL

(eg. SOM)

DDL (eg. LLE)

Other

AA NN

Data dimensionality reduction

Krishna Rajan: Iowa State University

Page 19: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Spatial –Signal Domain noise

Krishna Rajan: Iowa State University

Page 20: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Plane A Plane B

Anti-correlation

d110

A B A B A B A B A

Ideal Material

APT data

z-SDMs d0

11

Crystal structure can be observed

and anti-correlation in the

structure between adjacent planes is

observed

Does this slice have any crystallographic information. Can we salvage this information?

Spatial –Signal Domain noise

Krishna Rajan: Iowa State University

Page 21: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

(40000*200)

Right Singular Vectors capturing correlations in the SDM data

Projection of SDM data onto right singular vectors

Spatial –Signal Domain noise : quantification

Krishna Rajan: Iowa State University

Page 22: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Noise Reduction achieved consists of two aspects: Noise reduction based on data reconstruction using only the Structural Relevant Singular

Vectors. Noise reduction by identifying xy-SDMs that contribute to noise within the SRSVs.

EVSUX T

SRSVSRSVSRSV

(40000x200)

Structure Signal Noise alienated in the error term.

Spatial –Signal Domain noise : quantification

Krishna Rajan: Iowa State University

Page 23: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Sectioning of Data set

Eigenvalue Decomposition

(PCA)

TOF

Load

ings

Co

un

t

TOF

Raw TOF Spectra: No obvious patterns

Eigenspectra: “Hiddn” patterns

Spatial –Signal Domain noise : uncovering “hidden” patterns

Krishna Rajan: Iowa State University

Data Mining for Isotope Discrimination in Atom Probe Tomography: S.R. Broderick, A. Bryden, S.K. Suram and K. Rajan : Ultramicroscopy (in press - , http://dx.doi.org/10.1016/j.ultramic.2013.02.001 -2013)

Page 24: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

24Mg2+

25Mg2+ 26Mg2+

27Al2+

Mg2+ Al2+

Before After

TOF TOF

Spatial –Signal Domain noise : uncovering “hidden” patterns

Krishna Rajan: Iowa State University

Data Mining for Isotope Discrimination in Atom Probe Tomography: S.R. Broderick, A. Bryden, S.K. Suram and K. Rajan : Ultramicroscopy (in press - , http://dx.doi.org/10.1016/j.ultramic.2013.02.001 -2013)

Page 25: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

What data do we need?

Krishna Rajan: Iowa State University

Page 26: Microstructure and Materials Informaticscams.mse.ufl.edu/media/2013SummerSchool... · University of Florida - May 20th 2013 Krishna Rajan . Microstructural Data and Information Role

Extracting information beyond models and experiment 3D imaging Quantification of uncertainty and noise Stereology: back to basics

Summary

Krishna Rajan: Iowa State University