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Microfluidics in life sciences Applications (III) Joel S. Rossier 1

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Page 1: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

Microfluidics in life sciencesApplications (III)Joel S. Rossier

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Page 2: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

2Rossier EPFL 2011

Multiplexing

Microarray of DNAAffimetrix; Exonhit (full genome on a chip)

Microarray for proteinZeptosens, Zyomix (difficult to get a clear

vision of the market)

Page 3: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

3Rossier EPFL 2011

Zeptosens

Planar waveguide detection Detection of fluorescent molecule attached

to the surface

Page 4: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

4Rossier EPFL 2011

Zeptosens

Page 5: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

5Rossier EPFL 2011

Zeptosens application

Reverse array: Immobilisation of

separatedcomplexedprotein mixture

Western blotting Identification

Page 6: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

6Rossier EPFL 2011

Merger of microfluidics andmicroarray: a foot in the future

Example of paraflow

Page 7: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

7Rossier EPFL 2011

Merger of microfluidics andmicroarray: a foot in the future

Example of paraflow

Page 8: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

8Rossier EPFL 2011

SpinX technologies

Programmable fluidics

Thousands of assay in a cartridge

Valving by laser opening

Page 9: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

9Rossier EPFL 2011

Introducing the SpinX gStack

Dose response curvesfor full assay panel:multiple compoundsxmultiple assaysxmultiple concentrations

Dose response curvesfor full assay panel:multiple compoundsxmultiple assaysxmultiple concentrations

Same system for:• more cpds, less assays• more assays, less cpds• assay development• hit-to-IC50 follow-up• …

Same system for:• more cpds, less assays• more assays, less cpds• assay development• hit-to-IC50 follow-up• …

Compounds(up to 100% DMSO)

Enzymes(stock solution)

Substrates(stock solution)

Other: buffer, ATP,detection reagents,…

Page 10: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

10Rossier EPFL 2011

Complex Assays on the Bench-Top

Add AssayComponents

Load gStack

Analyze Data

Page 11: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

11Rossier EPFL 2011

Programmable MicrofluidicsKinase“Hits”

KinaseIC50

ProteaseIC50

Kinase

KinaseBuffer Compound

DMSO

Substrate

ATP

Pierce IQ

Incubate

Readout

Protease

AssayBuffer

ProteaseBuffer

Compound

Substrate

Pre-incubate

Kinetic Readout

DyeBuffer

DMSO

Dilution of fluorescent dye

Page 12: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

12Rossier EPFL 2011

Virtual Laser Valvecentrifugal force

VLVlocation defines volume metered

Single source chamber serves many destination chambers

Addition timing independent of reagent properties or amount of centrifugal force

sample A

sample B

reagent X

reagent Y

substrate

A-X A-Y B-X B-Y

Substrates

Microfluidic structures

Thin film which can be perforated by laser

SIDE VIEWFluid

Laser

Page 13: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

13Rossier EPFL 2011

The SpinX Lab

gCards automaticallyloaded from gStack…

… to rotor

Page 14: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

14Rossier EPFL 2011

Fluorescent Readout for Kinetics / End-Point

ContinuousRotation

Optical Modules based on DVD Pickup• VLV module: near-infrared laser + focus feedback• Readout modules (FI / FRET / TR-FRET, wavelength)

Ex. Fluorescence Intensity• Laser-based excitation• Emission photon counting

Page 15: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

15Rossier EPFL 2011

Protein Crystallisation in microchip (Emerald bioscience)

Page 16: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

16Rossier EPFL 2011

Protein Crystallisation in microchip (Emerald bioscience)

Page 17: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

17Rossier EPFL 2011

Microfluidics : large surface to volume ratio “God made the bulk; the surface was

invented by the devil.”

Wolfgang Pauli

Page 18: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

18Rossier EPFL 2011

Microfluidics in the air?

Droplet reactor No need for microfabricated device Reaction in a drop

Levitated Droplet

Prof Staffan Nilson; Lund University

Page 19: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

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How to work with a levitateddrop ? Accoustic wave

Acoustic levitation uses sound pressure to allow objects to float.

http://static.howstuffworks.com/gif/acoustic-levitation-2.jpg

Page 20: Microfluidics in life sciences Applications (III)€¦ · 2 Rossier EPFL 2011 Multiplexing Microarray of DNA Affimetrix; Exonhit (full genome on a chip) Microarray for protein Zeptosens,

20Rossier EPFL 2011

Airborne Cell Chemistry

Staffan Nilsson www.sgms.ch/meeting/2007/Abstracts/S_Nilsson.jpg

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21Rossier EPFL 2011

Airborne Cell Chemistry

Levitated separation. Right photo shows how one of the phases is discarded from the drop with a micropipette.

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22Rossier EPFL 2011

Conclusion

Different technologies have been developed in the last 20 years

Products are coming with more or less success on the market