mega - bioinfo2014 1/7 · 1. small membrane protein e e-protein.fasta 2. corona 3. mega6 mega5...

7
MEGA 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File Open A File/Session E-protein.fasta 4. Align 5. Translated Protein Sequences ( ) 1/7 MEGA - bioinfo2014

Upload: others

Post on 20-Apr-2020

2 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

MEGA

1. small membrane protein E E-protein.fasta

2.corona

3. MEGA6 MEGA5MEGA6 File → Open A File/Session E-protein.fasta

4. Align

5. Translated Protein Sequences(

)

1/7MEGA - bioinfo2014

Page 2: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

6. Genetic Code Yes

7. Alignment → Align by Muscle

8. Nothing selected for alignment. Select all? OK

9. Compute

2/7MEGA - bioinfo2014

Page 3: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

10. Data → Export Alignment → MEGA Format MEGA

11. E-protein_translated.meg

12. OK

3/7MEGA - bioinfo2014

Page 4: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

13. Data → Exit AlnExplorer Alignment Explorer

14.

15. MEGA E-protein_translated.meg

Bootstrap

4/7MEGA - bioinfo2014

Page 5: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

16. MEGA Analysis → Phylogeny → Construct/Test Neighbor-Joining Tree ...

17. Would you like to use the currently active data? ( ) Yes

18. Test of Phylogeny None Compute

5/7MEGA - bioinfo2014

Page 6: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

19.

Bootstrap20. 16 Test of Phylogeny Bootstrap method

No of Bootstrap Replications 500 Compute

6/7MEGA - bioinfo2014

Page 7: MEGA - bioinfo2014 1/7 · 1. small membrane protein E E-protein.fasta 2. corona 3. MEGA6 MEGA5 MEGA6 File →Open A File/Session E-protein.fasta ... Report a Bug Updates? "15: MUSCLE

21.

22. Caption

SARS

• SARS sars_E-protein.fasta

◦ SARS MEGA Alignment Explorer TeraPad fasta

7/7MEGA - bioinfo2014