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Investigating the biodistribution of MTL-CEBPA reveals delivery of small activating RNA into CD34+ cells and different types of immune cells in vivo Albert Kwok 1 , Nina Raulf 1 , Vikash Reebye 2 , Robert Habib 1 , Matt Catley 1 , David Blakey 1 , John Rossi 3 and Nagy Habib 2 1 MiNA Therapeutics, London, UK; 2 Department of Surgery, Imperial College London, UK; 3 Molecular and Cellular Biology, Beckman Research Institute, City of Hope, CA, USA Background MTL-CEBPA is currently in Phase Ib clinical trials in patients with advanced hepatocellular carcinoma (HCC) (Clinical trial information: NCT02716012). MTL-CEBPA comprises a small activating RNA (saRNA) encapsulated inside a SMARTICLES® liposomal nanoparticle to activate CEBPA expression in cells. Our preclinical studies have demonstrated that MTL-CEBPA modulates the properties of immune cells in the tumor microenvironment in syngeneic mouse tumour models, improves liver function and suppresses tumor growth in tumour models in immunocompetent mice and rats. Administration of MTL-CEBPA to patients increases the CEBPA mRNA expression in circulating white blood cells. However, the cell types targeted by MTL-CEBPA in the immune system are not well defined. Aim The aim of the study is to extend our knowledge on the biodistribution of MTL-CEBPA to cells of the immune system. RNA activation mechanism Flow cytometry gating strategy MTL-Cy3-CEBPA uptake in CD34+ cells CEBPA-51 saRNA to upregulate CEBPA expression NOV340 SMARTICLES ® liposome MTL-CEBPA API Formulation Drug Product Hour Intravenous Injection (3mg/kg, MTL-Cy3-CEBPA) Blood, bone marrow and spleen were collected and cells were isolated for flow cytometry (n=5 per group) 0 4 8 16 24 The CEBPA saRNA was conjugated with a Cy3 fluorophore and encapsulated inside the SMARTICLES® liposome to form MTL-Cy3-CEBPA. MTL-Cy3-CEBPA was intravenously injected in Wister rats. Blood, bone marrow and spleen were harvested post-intravenous injection of MTL-Cy3-CEBPA and cells were isolated for flow cytometry analysis. Monocytes The monocyte populations in blood, bone marrow and spleen mediate a significant uptake of MTL-Cy3-CEPBA. Macrophages The macrophage populations in blood and spleen, but not in bone marrow mediate a significant uptake of MTL-Cy3-CEPBA. Dendritic cells The dendritic cell populations in blood and bone marrow mediated a significant uptake of MTL-Cy3-CEPBA. A small population of dendritic cells in spleen also takes up MTL-Cy3- CEPBA. Neutrophils The neutrophil populations do not uptake MTL-Cy3-CEBPA. CD34+ cells The CD34+ cells in bone marrow but not in blood uptake MTL-Cy3- CEBPA. T cells The T cells in blood, bone marrow and spleen do not uptake MTL-Cy3- CEBPA. B cells The B cells in blood, bone marrow and spleen do not uptake MTL-Cy3- CEBPA. Conclusion MTL-Cy3-CEBPA can be taken up by some myeloid cell and CD34+ cell populations. Data are expressed as % of Cy3+ monocytes (CD45+ CD3- CD4+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h. Data are expressed as % of Cy3+ macrophages (CD45+ CD11b/c+ HIS36+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h. Data are expressed as % of Cy3+ dendritic cells (CD45+ CD11b/c+ OX62+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h. Data are expressed as % of Cy3+ neutrophils (CD45+ CD11b/c+ RP1+ cells). 1 way ANOVA was performed. No significant difference is observed between groups. Data are expressed as % of Cy3+ CD34+ cells. 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h. Data are expressed as % of Cy3+ T cells (CD45+ CD3+ cells). 1 way ANOVA was performed. No significant difference is observed between groups. Data are expressed as % of Cy3+ B cells (CD45+ CD45R+ cells). 1 way ANOVA was performed. No significant difference is observed between groups. Blood Bone Marrow Spleen Monocytes +++ ++ +++ Macrophages ++ - +++ Dendritic cells ++ ++++ + Neutrophils - - - CD34+ cells - ++ ND T cells - - - B cells - - - Summary of MTL-Cy3-CEBPA uptake in the cell populations 4 hour post intravenous injection. ++++ denotes ~40% of Cy3 uptake; +++ denotes ~30% of Cy3 uptake; ++ denotes ~20% of Cy3 uptake; + denotes between 5-10% of Cy3 uptake; - denotes no Cy3 uptake; ND refers to not determined. Experimental setup MTL-Cy3-CEBPA uptake in myeloid cells MTL-Cy3-CEBPA uptake in lymphoid cells Conclusion and future work References Future work To investigate the CEBPA mRNA gene expression level in the cells which uptake MTL-Cy3-CEBPA. To apply our technology to target other diseases which can be treated by modulating myeloid and CD34+ cells. Loading of saRNAs into Ago2 protein saRNA-Ago complex enters nucleus and associates with promoter region of target gene Generation of a transcriptional activation complex to generate new mRNA Synthesis of new protein 3. 4. 2. 1. Voutila J et al., Development and Mechanism of Small Activating RNA Targeting CEBPA, a Novel Therapeutic in Clinical Trials for Liver Cancer, Molecular Therapy, 2017 Portnoy V et al., saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription. Cell Research, 2016 Reebye V et al., Novel RNA oligonucleotide improves liver function and inhibits liver carcinogenesis in vivo. Hepatology, 2014 Reebye V et al., Gene activation of CEBPA using saRNA: preclinical studies of the first in human saRNA drug candidate for liver cancer. Oncogene, 2018 Kwok A et al., Developing small activating RNA as a therapeutic: current challenges and promises. Therapeutic delivery, 2019 MTL-CEBPA Drug Product 0h 4h 8h 16h 24h 0 10 20 30 40 50 Blood % of Cy3+ monocytes **** **** ** * Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 Bone marrow % of Cy3+ monocytes **** **** **** ** Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 Spleen % of Cy3+ monocytes **** **** **** **** Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 Blood % of Cy3+ macrophages ** ** * Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ macrophages Bone marrow Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 Spleen % of Cy3+ macrophages **** **** *** *** Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 Blood % of Cy3+ dendritic cells **** *** * * Post-intravenous injection 0h 4h 8h 16h 24h 0 20 40 60 80 Bone marrow % of Cy3+ dendritic cells **** ** Post-intravenous injection 0h 4h 8h 16h 24h 0 2 4 6 8 10 % of Cy3+ dendritic cells Spleen **** **** ** *** Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ neutrophils Blood Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ neutrophils Bone marrow Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ neutrophils Spleen Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ CD34+ cells Blood Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 Bone marrow % of Cy3+ CD34+ cells *** **** ** ** Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ T cells Blood Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ T cells Bone marrow Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ T cells Spleen Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ B cells Blood Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ B cells Bone marrow Post-intravenous injection 0h 4h 8h 16h 24h 0 10 20 30 40 % of Cy3+ B cells Spleen Post-intravenous injection FSC-A SSC-A FSC-A Viability Live FSC-H FSC-A Singlets FSC-A CD45 CD45R CD3 B-Cells T-Cells CD4 CD3 Monocytes CD11 b/c HIS36 Macrophages OX62 Dendritic cells CD11 b/c CD45+ RP1 Neutrophils CD11 b/c FSC-A CD34+ cells CD34

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Page 1: Investigating the biodistribution of MTL-CEBPA reveals ...€¦ · Investigating the biodistribution of MTL-CEBPA reveals delivery of small activating RNA into CD34+ cells and different

Investigating the biodistribution of MTL-CEBPA reveals delivery of small activating RNA into CD34+ cells and different types of immune cells in vivoAlbert Kwok1, Nina Raulf1, Vikash Reebye2, Robert Habib1, Matt Catley1, David Blakey1, John Rossi3 and Nagy Habib2

1MiNA Therapeutics, London, UK; 2Department of Surgery, Imperial College London, UK; 3Molecular and Cellular Biology, Beckman Research Institute, City of Hope, CA, USA

Background

• MTL-CEBPA is currently in Phase Ib clinical trials in patients withadvanced hepatocellular carcinoma (HCC) (Clinical trial information:NCT02716012).

• MTL-CEBPA comprises a small activating RNA (saRNA) encapsulatedinside a SMARTICLES® liposomal nanoparticle to activate CEBPAexpression in cells.

• Our preclinical studies have demonstrated that MTL-CEBPA modulatesthe properties of immune cells in the tumor microenvironment insyngeneic mouse tumour models, improves liver function andsuppresses tumor growth in tumour models in immunocompetentmice and rats.

• Administration of MTL-CEBPA to patients increases the CEBPA mRNAexpression in circulating white blood cells.

• However, the cell types targeted by MTL-CEBPA in the immune systemare not well defined.

Aim• The aim of the study is to extend our knowledge on the biodistribution

of MTL-CEBPA to cells of the immune system.

RNA activation mechanism

Flow cytometry gating strategy MTL-Cy3-CEBPA uptake in CD34+ cells

CEBPA-51 saRNA to upregulate

CEBPA expression

NOV340 SMARTICLES®

liposomeMTL-CEBPA

API Formulation Drug Product

Hour

Intravenous Injection (3mg/kg, MTL-Cy3-CEBPA)

Blood, bone marrow and spleen were collected and cells were isolated for flow cytometry (n=5 per group)

0 4 8 16 24

• The CEBPA saRNA was conjugated with a Cy3 fluorophore and encapsulated inside the SMARTICLES® liposome to form MTL-Cy3-CEBPA.

• MTL-Cy3-CEBPA was intravenously injected in Wister rats.

• Blood, bone marrow and spleen were harvested post-intravenous injection of MTL-Cy3-CEBPA and cells were isolated for flow cytometry analysis.

Monocytes• The monocyte populations in blood, bone marrow and spleen mediate a

significant uptake of MTL-Cy3-CEPBA.

Macrophages• The macrophage populations in blood and spleen, but not in bone

marrow mediate a significant uptake of MTL-Cy3-CEPBA.

Dendritic cells• The dendritic cell populations in blood and bone marrow mediated a

significant uptake of MTL-Cy3-CEPBA.• A small population of dendritic cells in spleen also takes up MTL-Cy3-

CEPBA.

Neutrophils• The neutrophil populations do not uptake MTL-Cy3-CEBPA.

CD34+ cells• The CD34+ cells in bone marrow but not in blood uptake MTL-Cy3-

CEBPA.

T cells• The T cells in blood, bone marrow and spleen do not uptake MTL-Cy3-

CEBPA.

B cells• The B cells in blood, bone marrow and spleen do not uptake MTL-Cy3-

CEBPA.

Conclusion• MTL-Cy3-CEBPA can be taken up by some myeloid cell and

CD34+ cell populations.

Data are expressed as % of Cy3+ monocytes (CD45+ CD3- CD4+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h.

Data are expressed as % of Cy3+ macrophages (CD45+ CD11b/c+ HIS36+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h.

Data are expressed as % of Cy3+ dendritic cells (CD45+ CD11b/c+ OX62+ cells). 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h.

Data are expressed as % of Cy3+ neutrophils (CD45+ CD11b/c+ RP1+ cells). 1 way ANOVA was performed. No significant difference is observed between groups.

Data are expressed as % of Cy3+ CD34+ cells. 1 way ANOVA was performed. *= p<0.05;**=p<0.01; ***=p<0.001; ****=p<0.0001 when compared to 0h.

Data are expressed as % of Cy3+ T cells (CD45+ CD3+ cells). 1 way ANOVA was performed. No significant difference is observed between groups.

Data are expressed as % of Cy3+ B cells (CD45+ CD45R+ cells). 1 way ANOVA was performed. No significant difference is observed between groups.

Blood Bone Marrow Spleen

Monocytes +++ ++ +++Macrophages ++ - +++Dendritic cells ++ ++++ +

Neutrophils - - -CD34+ cells - ++ ND

T cells - - -B cells - - -

Summary of MTL-Cy3-CEBPA uptake in the cell populations 4 hour post intravenous injection. ++++ denotes ~40% of Cy3 uptake; +++ denotes ~30% of Cy3 uptake; ++ denotes ~20% of Cy3 uptake; + denotes between 5-10% of Cy3 uptake; - denotes no Cy3 uptake; ND refers to not determined.

Experimental setup

MTL-Cy3-CEBPA uptake in myeloid cells

MTL-Cy3-CEBPA uptake in lymphoid cells

Conclusion and future work

References

Future work• To investigate the CEBPA mRNA gene expression level in the

cells which uptake MTL-Cy3-CEBPA.• To apply our technology to target other diseases which can

be treated by modulating myeloid and CD34+ cells.

Loading of saRNAs into Ago2 protein

saRNA-Ago complex enters nucleus and associates with promoter region of target gene

Generation of a transcriptional activation complex to generate new mRNA

Synthesis of new protein

3.

4.

2.

1.

• Voutila J et al., Development and Mechanism of Small Activating RNA Targeting CEBPA, a Novel Therapeutic in Clinical Trials for Liver Cancer, Molecular Therapy, 2017

• Portnoy V et al., saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription. Cell Research, 2016

• Reebye V et al., Novel RNA oligonucleotide improves liver function and inhibits liver carcinogenesis in vivo. Hepatology, 2014

• Reebye V et al., Gene activation of CEBPA using saRNA: preclinical studies of the first in human saRNA drug candidate for liver cancer. Oncogene, 2018

• Kwok A et al., Developing small activating RNA as a therapeutic: current challenges and promises. Therapeutic delivery, 2019

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