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Introduction to Neuroimaging Aaron S. Field, MD, PhD Assistant Professor of Radiology Neuroradiology Section University of WisconsinMadison Updated 7/17/07

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Page 1: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Introduction to Neuroimaging

Aaron S. Field, MD, PhD

Assistant Professor of Radiology

Neuroradiology Section

University of Wisconsin–Madison

Updated 7/17/07

Page 2: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Neuroimaging ModalitiesRadiography (X-Ray)

Fluoroscopy (guided procedures)

• Angiography

• Diagnostic

• Interventional

• Myelography

Ultrasound (US)

• Gray-Scale

• Color Doppler

Computed Tomography (CT)

• CT Angiography (CTA)

• Perfusion CT

• CT Myelography

Magnetic Resonance (MR)

• MR Angiography/Venography (MRA/MRV)

• Diffusion and Diffusion Tensor MR

• Perfusion MR

• MR Spectroscopy (MRS)

• Functional MR (fMRI)

Nuclear Medicine

• Single Photon Emission Computed Tomography (SPECT)

• Positron Emission Tomography (PET)

―Duplex‖

Page 3: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Radiography (X-Ray)

Page 4: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Radiography (X-Ray)

Primarily used for spine:

• Trauma

• Degenerative Dz

• Post-op

Page 5: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Fluoroscopy (Real-Time X-Ray)

Fluoro-guided procedures:

• Angiography

• Myelography

Page 6: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Fluoroscopy (Real-Time X-Ray)

Page 7: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Fluoroscopy (Real-Time X-Ray)

Digital Subtraction Angiography

Page 8: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Fluoroscopy (Real-Time X-Ray)

Digital Subtraction Angiography

Page 9: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

• Aneurysms, vascular malformations and fistulae

• Vessel stenosis, thrombosis, dissection, pseudoaneurysm

• Stenting, embolization, thrombolysis (mechanical and pharmacologic)

• Ability to intervene

• Time-resolved blood flow dynamics (arterial, capillary, venous phases)

• High spatial and temporal resolution

• Invasive, risk of vascular injury and stroke

• Iodinated contrast and ionizing radiation

Indications:

Advantages:

Disadvantages:

Digital Subtraction Angiography

Page 10: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Fluoroscopy (Real-Time X-Ray)

Myelography

Lumbar or cervical puncture

Inject contrast intrathecally

with fluoroscopic guidance

Follow-up with post-myelo CT

(CT myelogram)

Page 11: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Myelography

• Spinal stenosis, nerve root compression

• CSF leak

• MRI inadequate or contraindicated

• Defines extent of subarachnoid space, identifies spinal block

• Invasive, complications (CSF leak, headache, contrast reaction, etc.)

• Ionizing radiation and iodinated contrast

• Limited coverage

Indications:

Advantages:

Disadvantages:

Page 12: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ultrasound

carotid

US transducer

Page 13: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ultrasound

• Carotid stenosis

• Vasospasm - Transcranial Doppler (TCD)

• Infant brain imaging (open fontanelle = acoustic window)

• Noninvasive, well-tolerated, readily available, low cost

• Quantitates blood velocity

• Reveals morphology (stability) of atheromatous plaques

• Severe stenosis may appear occluded

• Limited coverage, difficult through air/bone

• Operator dependent

Indications:

Advantages:

Disadvantages:

Page 14: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ultrasound – Gray Scale

Gray-scale image of carotid artery

Page 15: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ultrasound – Gray Scale

Gray-scale image of carotid artery

Plaque in ICA

Page 16: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ultrasound - Color Doppler

Peak Systolic Velocity (cm/sec) ICA Stenosis (% diameter)

125 – 225 50 – 70

225 – 350 70 – 90

>350 >90

Page 17: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography (CT)

Page 18: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

A CT image is a pixel-by-pixel map of

X-ray beam attenuation

(essentially density) in

Hounsfield Units (HU)

HUwater = 0

Bright = ―hyper-attenuating‖ or

―hyper-dense‖

Page 19: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

Typical HU Values:

Air –1000

Fat –100 to –40

Water 0

Other fluids (e.g. CSF) 0–20

White matter 20–35

Gray matter 30–40

Blood clot 55–75

Calcification >150

Bone 1000

Metallic foreign body >1000

Brain

Page 20: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

Attenuation: High or Low?

High:

1. Blood, calcium

2. Less fluid / more tissue

Low:

1. Fat, air

2. More fluid / less tissue

Air –1000

Fat –100 to –40

Water 0

Other fluids 0–20

White matter 20–35

Gray matter 30–40

Blood clot 55–75

Calcification >150

Bone 1000

Metallic foreign body >1000

Page 21: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance
Page 22: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

“Soft Tissue Window” “Bone Window”

Page 23: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

Page 24: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Computed Tomography

Scan axially…

…stack and re-slicein any plane―2D Recons‖

Page 25: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Indications

• Skull and skull base, vertebrae

(trauma, bone lesions)

• Ventricles

(hydrocephalus, shunt placement)

• Intracranial masses, mass effects

(headache, N/V, visual symptoms, etc.)

• Hemorrhage, ischemia

(stroke, mental status change)

• Calcification

(lesion characterization)

Page 26: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Skull and skull base, vertebrae

Fractures

Page 27: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Skull and skull base, vertebrae

Multiple Myeloma Osteoma

Page 28: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Ventricles

Hydrocephalus

Page 29: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Intracranial masses, mass effects

Solid mass Cystic mass

Page 30: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Intracranial masses, mass effects

L hemisphere swelling Generalized swelling

Page 31: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Acute Hemorrhage

Intraparenchymal Subarachnoid Subdural Epidural

Page 32: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Acute Ischemia

Loss of gray-white distinction and swelling in known arterial territory

Page 33: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Calcification

Hyperparathyroidism

Page 34: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

1. Rapid IV contrast bolus

2. Dynamic scanning during arterial phase

3. Advanced 2D and 3D Reconstructions:

2D multi-planar (sagittal, coronal)

Volume–rendered 3D recons

CT Angiography

Page 35: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Angiography - Head

Page 36: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Angiography - HeadCircle of Willis

Aneurysms

Vascular Malformations

Page 37: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Angiography - Neck

Carotid

bifurcations

Vertebral arteries

Aortic arch

Page 38: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Angiography

3D Volume Rendering

Page 39: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

• Atherosclerosis

• Thromboembolism

• Vascular dissection

• Aneurysms

• Vascular malformations

• Penetrating trauma

CT Angiography - Indications

Page 40: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Perfusion CBV

CBF

MTT

Page 41: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Hemodynamic Parameters Derived From Concentration-Time Curves

Artery

VeinBolus

arrival

Page 42: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Hemodynamic Parameter Maps

Transit Time (sec)

Blood Flow (mL/min/g)

Blood Volume (mL/g)

Page 43: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

• Spinal CT immediately following conventional

myelogram

• Cross-sectional view of spinal canal along with spinal

cord and nerve roots

• Assess spinal stenosis/nerve root compression

(e.g. disc herniation, vertebral fracture, neoplasm)

CT Myelography

Page 44: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Myelography

Page 45: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

CT Myelography

Page 46: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance (MR)

Hydrogen proton in water or fat

MRI

Page 47: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance Imaging

Page 48: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

COMPUTER

Magnetic Resonance Imaging

magnetic

field

RF

Transmitter Receiver

RF = Radio Frequency energy

Received signal

Page 49: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

MRI Safety: The Magnet is Always On!

Page 50: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance Safety

Typically safe*:

• Orthopedic hardware

• Surgical clips, staples, sutures (older devices must be checked!)

• Intravascular stents/filters

* This is an incomplete list and there are many exceptions to every ―rule‖When in doubt, check it out!

Typically unsafe*:

• Cardiac pacemakers (and other electrical devices)

• Some older aneurysm clips

• Metal fragments in orbit (1 case report)

• Oxygen tanks, carts, chairs, stools, IV poles, gurneys, etc.

• Some cosmetics, tattoos, jewelry, hairpins, etc.

• Pager, watch, wallet, ID badge, pen, keys, pocketknife, etc.

MRI Safety Test:

Will it: Move? Torque? Get hot? Pass a current? Malfunction? Become a projectile? Get stuck in scanner?

Page 51: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic ResonanceExcited protons relax back to equilibrium

Relaxation rates depend onlocal molecular environment

T1

T2

Page 52: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

“T1-weighted” “T2-weighted” w/ fat suppression

Magnetic Resonance

Page 53: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

Arachnoid Cyst

T2T1

Page 54: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

T2 T2 w/ fat suppression

Page 55: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

T2 T2 w/ fat suppression

Page 56: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

T2 T2 w/ water suppression

(T2-FLAIR)

Page 57: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

T2 T2*

Accentuating blood/calcium

“blooming”

Page 58: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

NORMAL CYTOTOXIC EDEMA (Acute Ischemia)

Diffusion

MR Signal

Diffusion MR Imaging

Page 59: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

Imaging Diffusion

Highly sensitive to acute ischemia—

+ within a few hours!

No other imaging is more sensitive to acute ischemia

although perfusion imaging

reveals hypoperfused tissue

at risk for ischemia

Acute left MCA infarction

DWI

Page 60: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance Angiography

Axial ―source‖ images… …reformatted to ―maximum intensity projections‖ (MIP)

Multiple projections allow 3D-like displayNo need for IV contrast!

Page 61: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Time-Resolved MRA (TRICKS)

IV contrast bolus reveals temporal dynamics

Page 62: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

MRA Perfusion MR

Magnetic Resonance Angiography with Perfusion MR

Page 63: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Magnetic Resonance

Tissue contrast in MR may be based on:

• Proton density

• Water/fat/protein content

• Metabolic compounds (MR Spectroscopy)

e.g. Choline, creatine, N-acetylaspartate, lactate

• Magnetic properties of specific molecules

e.g. Hemoglobin

• Diffusion of water

• Perfusion (capillary blood flow)

• Bulk flow (large vessels, CSF)

Page 64: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

1. CT: Iodine-based

Iodine is highly attenuating of X-ray beam (bright on CT)

MRI: Gadolinium-based

Gadolinium is a paramagnetic metal that hastens T1 relaxation of

nearby water protons (bright on T1-weighted images)

2. Tissue that gets brighter with IV contrast is said to “enhance”

(Brightness, in and of itself, is not enhancement!)

3. Enhancement reflects the vascularity of tissue, but…

The blood-brain barrier keeps IV contrast out of the brain!

Enhancement implies BBB is absent or dysfunctional

Remember: Some brain anatomy lives outside the BBB

IV Contrast in Neuroimaging

Page 65: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

1. Vessels

2. Meninges

pachy = dura

lepto = pia-arachnoid

3. Circumventricular organs(structures outside BBB)

Pineal gland

Pituitary gland

Choroid plexus

4. Absent/leaky BBB

Some tumors

Inflammation

Infarction

IV Contrast in Neuroimaging

Enhancement:

Page 66: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

EnhancementT1 T1+C

Hemorrhagic melanoma metastasis

Page 67: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

IV Contrast: Is it Indicated?

• Trauma

• R/O hemorrhage

• Hydrocephalus

• Dementia

• Epilepsy

• Neoplasm

• Infection

• Vascular disease

• Inflammatory disease

Typically not Typically yes

Always best to provide detailed indication!

Radiologist will protocol exam accordingly

Page 68: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

MR vs. CT

Advantages:

• Simpler, cheaper, more accessible

• Tolerated by claustrophobics

• No absolute contraindications

• Fewer pitfalls in interpretation

• Better than MR for bone detail

Disadvantages:

• Ionizing radiation

• IV contrast complications

• Need recons for multi-planar

• Limited range of tissue contrasts

CT MRAdvantages:

• Much broader palette of tissue contrasts (including functional and molecular) yields greater anatomic detail and more comprehensive analysis of pathology

• No ionizing radiation

• Direct multi-planar imaging

• IV contrast better tolerated (in most pts.)

Disadvantages:

• Higher cost, limited access

• Difficult for unstable patients

• Several absolute contraindications (cardiac pacer, some aneurysm clips, etc.)

• Claustrophobics may need sedation

• Image interpretation more challenging

• Lacks bone detail

Page 69: Introduction to Neuroimaging · • Cross-sectional view of spinal canal along with spinal cord and nerve roots ... Magnetic Resonance Safety Typically safe*: ... Magnetic Resonance

Introduction to Neuroimaging

Aaron S. Field, MD, PhD

Assistant Professor of Radiology

Neuroradiology Section

University of Wisconsin–Madison