framework for the genetic improvement of bambara groundnut : … · 2020-02-19 · the identified...

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References Aliyu A, Massawe F, Mayes S (2015). Beyond landraces: developing improved germplasm resources for underutilized species- a case for Bambara groundnut. Biotechnology and Genetic engineering review, DOI: 10.1080/02648725.2014.992625 Molosiwa OO, Aliyu S, Stadler F, Mayes K, Massawe F, Kilian A, Mayes S (2014). SSR marker development, genetic diversity and population structure analysis of Bambara groundnut [Vigna subterranea (L.) Verdc.] landraces. Genetic resources and crop evolution, DOI 10.1007/s10722-015-0226-6 Background information Bambara groundnut breeding Can fixed 4-200 kg N /ha Moderate promiscuity to wide rhizobia spp Energy=360-400 Kcal/100mg Carbohydrate=20% Protein=15-20% Fat=5-7% Appreciable yield under extreme low rainfall Moderate pest & disease resistance Could impact positively on issues of sustainability in the context of agriculture, environment and climate change Could impact positively on nutrition, livelihood & economic empowerment within the context of global food security Grain yield potential of 500-2500 kg/ha from landrace genotypes Source of livelihood for in rural areas Bambara Groundnut Bambara groundnut Constraints Progress & expected outcome Framework for the genetic improvement of Bambara groundnut : MAGIC populations for ideotype development, genetic and genomic analysis Aliyu Siise* 2,3 , Massawe Festo 2 , and Mayes Sean 1,3 (1) School of Biosciences, The University of Nottingham, Sutton Bonington Campus, LE12 5RD, UK, (2) School of Biosciences, University of Nottingham Malaysian Campus, Jalan Broga, Semenyih, 43500, Selangor, Malaysia (3) Crops for the Future (CFF), Jalan Broga, Semenyih 43500, Selangor, Malaysia Despite its potential, Bambara groundnut largely exist as landraces with many constraints (Figure 2). Major constraints of Bambara groundnut Lack of improved genotypes developed through controlled breeding programme Limited understanding of genetics control of important phenotypic traits Limited understanding of physiological mechanism underlying phenotypic traits Lack of international well coordinated breeding programme Breeding objectives Ten genotypes of Bambara groundnut with phenotypic, allelic, and geographical origin diversity having the potential to contribute to most of the identified breeding objectives (Figure 3) of the crop have been selected as founder lines to build 8-way MAGIC populations (Table 1; Figure 4). i Identifying Breeding Objectives Stakeholder discussions Formal/literature reports Results from major legumes Diversity analysis of germplasm Integrated Breeding Objectives Ideotype Development Genetic Analysis Stakeholder Crop Preferences Grain Yield Physiological Maturity Plant Phenology Nutrition and sensory issues Genetic Bottlenecks and Opportunities Photoperiod and fertility issues Drought response mechanism Flooding/Anoxic stress Nitrogen fixation potentials Bambara groundnut core breeding objectives Primary and secondary sources of information MAGIC populations Targeted intervention zones and/or systems Comparative research analysis approaches across the research value chain Genetic analysis Variety Development Eco-Physiology Agro-ecologies Cropping systems Industry/processing QTL & association mapping for traits & gene analysis and Multi-locational trials for GxE interactions analysis Improved Soil fertility Improved Nutrition New Data Generation Improved Livelihood MAGIC Breeding Populations Donor parental lines selection Purified genotypes (Single plant descent Landraces Genotypes from preliminary crosses No Genotype Testa colour Origin 1 Tiga Nicaru Cream Mali 2 DipC Cream Botswana 3 IITA 686 Dark Tanzania 4 Uniswa red Red Swaziland 5 Getso Cream Nigeria 6 S19-3 Dark Namibia 7 Lun T Cream Sierra Leone 8 DodR Red Tanzania 9 AHM Red Namibia 10 TAN385 Cream Tanzania UNISWA RED DodR IITA 686 Acc385TZA LunT TIGA NICARU AHM 968 S19-3 DipC GETSO Figure 4: The Ten parental genotypes for MAGIC breeding Table 1: Names and geographical origin of genotypes selected for MAGIC breeding Figure 1: Overview of the economic importance of Bambara groundnut Figure 2: Overview of the major constraints of Bambara groundnut Figure 3: Identified breeding objectives in Bambara groundnut Figure 6: Conceptual framework of global germplasm of Bambara groundnut within integrated breeding programmes as a model for the genetic development of other underutilized species Genetic crosses Our proposed conceptual framework of a breeding programme for Bambara groundnut (as an exemplar for the many other underutilized species) focuses on harnessing the potential of the ‘second/next generation’ germplasm resources and specifically MAGIC (Figure 6). The advantage of this approach for genetic improvement of underutilized crop species such as Bambara groundnut is to make efficient use of germplasm resources for variety development coupled with genetic analysis. Impact & expected outcome Figure 5A: Day 1 after cross Figure 5B: Day 3-5 after cross Figure 5C: Day 10 after cross FOOD SECURITY

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Page 1: Framework for the genetic improvement of Bambara groundnut : … · 2020-02-19 · the identified breeding objectives (Figure 3) of the crop have been selected as founder lines to

References • Aliyu A, Massawe F, Mayes S (2015). Beyond landraces: developing improved germplasm resources for underutilized species- a case for Bambara groundnut. Biotechnology and Genetic engineering review, DOI: 10.1080/02648725.2014.992625 • Molosiwa OO, Aliyu S, Stadler F, Mayes K, Massawe F, Kilian A, Mayes S (2014). SSR marker development, genetic diversity and population structure analysis of Bambara groundnut [Vigna subterranea (L.) Verdc.] landraces. Genetic resources and

crop evolution, DOI 10.1007/s10722-015-0226-6

Background information Bambara groundnut breeding

•Can fixed 4-200 kg N /ha •Moderate promiscuity to wide rhizobia spp

• Energy=360-400 Kcal/100mg •Carbohydrate=20% •Protein=15-20% • Fat=5-7%

•Appreciable yield under extreme low rainfall •Moderate pest &

disease resistance

Could impact positively on issues of sustainability in the context of agriculture,

environment and climate change

Could impact positively on nutrition, livelihood & economic empowerment within the context of global

food security

•Grain yield potential of

500-2500 kg/ha from landrace genotypes

• Source of livelihood for in rural areas

Bambara Groundnut

Bambara groundnut

Constraints

Progress & expected outcome

Framework for the genetic improvement of Bambara groundnut : MAGIC populations for ideotype development, genetic and genomic analysis

Aliyu Siise*2,3, Massawe Festo2, and Mayes Sean1,3

(1) School of Biosciences, The University of Nottingham, Sutton Bonington Campus, LE12 5RD, UK, (2) School of Biosciences, University of Nottingham Malaysian Campus, Jalan Broga, Semenyih, 43500, Selangor, Malaysia (3) Crops for the Future (CFF), Jalan Broga, Semenyih 43500, Selangor, Malaysia

Despite its potential, Bambara groundnut largely exist as landraces with many constraints (Figure 2).

Major constraints of Bambara groundnut

Lack of improved genotypes developed through controlled breeding programme

Limited understanding of genetics control of important phenotypic traits

Limited understanding of physiological mechanism underlying phenotypic traits

Lack of international well coordinated breeding programme

Breeding objectives

Ten genotypes of Bambara groundnut with phenotypic, allelic, and geographical origin diversity having the potential to contribute to most of the identified breeding objectives (Figure 3) of the crop have been selected as founder lines to build 8-way MAGIC populations (Table 1; Figure 4).

i

Identifying Breeding Objectives

Stakeholder discussions

Formal/literature reports

Results from major legumes

Diversity analysis of germplasm

Integrated Breeding Objectives

Ideotype

Development Genetic Analysis

Stakeholder Crop Preferences

Grain Yield

Physiological Maturity

Plant Phenology

Nutrition and sensory issues

Genetic Bottlenecks and Opportunities

Photoperiod and fertility issues

Drought response

mechanism

Flooding/Anoxic stress

Nitrogen fixation

potentials

Bambara

groundnut core

breeding

objectives

Primary and secondary sources of information

MAGIC populations

Targeted intervention zones and/or systems

Comparative research analysis approaches across the research value chain

Genetic analysis Variety Development Eco-Physiology

Agro-ecologies Cropping systems Industry/processing

QTL &

asso

cia

tion

map

pin

g fo

r tr

aits

& g

en

e a

naly

sis

an

d

Mu

lti-locatio

nal

tria

ls fo

r G

xE

inte

ractio

ns

an

aly

sis

Improved

Soil fertility

Improved

Nutrition

New Data

Generation

Improved

Livelihood

MAGIC Breeding

Populations

Donor parental lines

selection

Purified genotypes

(Single plant descent

Landraces

Genotypes from preliminary crosses

No Genotype Testa

colour

Origin

1 Tiga

Nicaru

Cream Mali

2 DipC Cream Botswana

3 IITA 686 Dark Tanzania

4 Uniswa

red

Red Swaziland

5 Getso Cream Nigeria

6 S19-3 Dark Namibia

7 Lun T Cream Sierra Leone

8 DodR Red Tanzania

9 AHM Red Namibia

10 TAN385 Cream Tanzania

UNISWA RED DodR IITA 686 Acc385TZA LunT

TIGA NICARU AHM 968 S19-3 DipC GETSO

Figure 4: The Ten parental genotypes for MAGIC breeding

Table 1: Names and geographical origin of genotypes selected for MAGIC breeding

Figure 1: Overview of the economic importance of Bambara groundnut

Figure 2: Overview of the major constraints of Bambara groundnut

Figure 3: Identified breeding objectives in Bambara groundnut

Figure 6: Conceptual framework of global germplasm of Bambara groundnut within integrated breeding programmes as a model for the genetic development of other underutilized species

Genetic crosses

Our proposed conceptual framework of a breeding programme for Bambara groundnut (as an exemplar for the many other underutilized species) focuses on harnessing the potential of the ‘second/next generation’ germplasm resources and specifically MAGIC (Figure 6). The advantage of this approach for genetic improvement of underutilized crop species such as Bambara groundnut is to make efficient use of germplasm resources for variety development coupled with genetic analysis.

Impact & expected outcome

Figure 5A: Day 1 after cross Figure 5B: Day 3-5 after cross Figure 5C: Day 10 after cross

FOOD SECURITY