febs letters volume 579 subject indexacute pancreatitis, 6355 acute phase response, 5791...

FEBS Letters Volume 579Subject Index

doi:10.1016/S0014-5793(05)01502-4

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Subject Index

A

a3 isoform, 4937Ab, 2564Ab40, 3574Ab peptide, 2119AAA+ ATPase, 863, 8773-AB, 615Ab initio calculations, 6601ABC transporter, 3473, 4193, 4413, 5399, 5765, 6791ABCB1, 3473ABCD1, 5512ABCD1-deficient mouse, 5512ABCG2, 6569ABF1, 4535Abi-1, 2986Abnormally hyperphosphorylated tau, 363Abscisic acid, 4454Abzyme, 3960Acanthamoeba castellanii, 3136Acaryochloris marina, 1306ACAULIS5, 1557ACC synthase, 2458Acclimatization, 5553Accuracy, 938Accuracy limit, 1203Acetohydroxyacid synthase, 4903Acetyl-CoA carboxylase, 2045, 6105Acetylation, 2097Acetylcholine, 2111Acetylcholine binding, 2643Acetylcholinesterase, 5260b1,3-N-Acetylglucosaminyltransferase, 71N-Acetylmannosamine, 5079Acetyltransferase, 6428AChR, 2469a1-Acid glycoprotein, 3596Acid soil, 6890Acidic chaperone, 757ACK, 5040ACL5, 1557Acrosome, 5734Acrosome reaction, 6667Actin, 48, 100, 455, 655, 4031, 5253Actin-binding protein, 6121, 6673Actin-crosslinking, 6311Actin cytoskeleton, 577, 2001, 5181, 6834Actin modulator, 4175Actin patch, 6311a-Actinin, 1607Activation, 5114Activation-induced cell death, 6465Activation tagging, 4622Active site, 1383Active site prediction, 3503Activin, 4615Activin receptor-like kinase-1, 5481Activity restoration, 5609ActVB from Streptomyces coelicolor, 2817Acute pancreatitis, 6355Acute phase response, 5791Acyl-adenylate, 4389Acyl carrier protein, 4892N-Acylethanolamine, 4724Acyl-homoserine lactone, 3713AD, 3481ADAM10, 6333ADAM12 integrin, 5589

Adaptive immunity, 4449Adaptor, 2986, 3330Adducin, 6439Adenosine 50-triphosphate, 3783Adenosine deaminase isoenzyme, 643Adenosine, N6-Acetyl, 2807S-Adenosylmethionine, 1983Adenovirus, 2119Adenovirus E1B 55K protein, 2752Adenylyl cyclase, 5746Adherence to intestinal epithelial cells, 3449Adherens junction, 4851Adhesion, 6473Adipocyte, 449, 6105Adipocyte cell, 1911Adipocytokine, 6417Adipokine, 41Adiponectin, 5163, 5565, 6821Adiponectin receptor, 6821Adipose tissue, 3487, 5631ADP inhibition, 5114ADP/ATP carrier, 633ADP-glucose pyrophosphorylase, 983ADP-ribosylation, 4125, 5751ADP-ribosylation factor, 5741ADP-ribosylation factor 6, 6834ADP-ribosylcysteine hydrolase, 4125b-Adrenergic receptor, 133b1 Adrenoceptor, 5494Adrenoleukodystrophy, 409Adrenomedullin, 4997Advanced glycation end products, 4265AF-6, 2243Affinity tag, 2082Ab(25–35) fragment, 2913Ab(31–35) fragment, 2913Age polyethism, 4961Ageing, 2541, 3651Ageing rate, 2035Age-related diseases, 2035Aggregation, 4235, 4242, 4550, 6601Aggregation sequence, 1503Aggresome, 571Aging, 1350, 4897Agrin, 2469Agrobacterium tumefaciens, 3075Agrocybe, 6247AHL-lactonase, 3713Akt, 529, 1995, 4049, 4069Alamethicin, 5247ALAS1, 1061Alcohol, 3596Alcoholicity, 5205Aldehyde, 6870Aldehyde dehydrogenase, 3759, 6115ALDH7A1, 3759Aldolase, 1607Aldose reductase, 3085ALDP, 5512Alginate, 4423Algorithms, 5904Alix, 1745ALK1 and 5, 4031Alkaline adaptation, 1745Alkaline phosphatase, 1187Allergy, 3807Allophycocyanins, 3569Allosteric effector, 627Allosteric inhibition, 5577Allosteric reaction, 2679Allosteric regulation, 983, 2313, 3363Allosteric sites, 6726

doi:10.1016/S0014-5793(05)1502-4

Subject Index Volume 579 59

All-trans retinoic acid, 2788Alpha 1 antitrypsin Portland, 4813Alpha/beta hydrolase, 3175Alt1, 6890Alternative oxidase, 3136Alternative oxidase structure, 331Alternative pathways, 5265Alternative promoters, 5365Alternative splicing, 2137, 3646, 3770, 3842, 4138, 5527Alternative substrate, 5773Aluminum fluoride, 5741Alveolar epithelial cells, 5430Alzheimer, 2564Alzheimer disease, 251, 363, 1371, 2759Alzheimer�s disease, 753, 1136, 1143, 1338, 1995, 2119, 2185, 2421,

3481, 3574, 4775, 5029, 6027, 6411, 6726, 6737Amide I0 and II bands, 5199Amiloride, 2087Amine oxidase, 2203Amino acid, 2609, 3376, 3467Amino acid composition, 3444Amino acid kinase family, 6903Amino acid transport, 2499Amino acid usage, 5205, 6499Aminoacyl-tRNA acceptor site, 995Aminoacyl-tRNA synthetase, 2629, 3467, 6049c-Aminobutyraldehyde dehydrogenase, 4107c-Aminobutyrate, 415Aminopeptidase, 61402-Aminoperimidine, 373Amoebiasin, 1573AMP-activated protein kinase, 236, 2045, 5163AMP binding, 5577AMP-forming acetyl-CoA synthetase, 477Amphibian, 4443AMPK, 6105Amylase, 1405a-Amylase inhibitor, 5616Amyloid, 1136, 1453, 2185, 2589, 6601, 6635Amyloid-b, 1995b-Amyloid peptide, 753, 4775Amyloid b-peptide, 2913Amyloid b-protein, 2185, 2907Amyloid-b aggregation, 5260Amyloid beta-protein, 6027Amyloid fibrillogenesis, 5425Amyloid precursor protein, 753, 2119b-Amyloid precursor protein, 2759Amyloid-prone cystatin, 2277Amyloidoses, 4099Amylose, 1405Amylosucrase, 1405Anabaena sp. PCC 7120, 6111Anaerobic respiration, 4605Analogues, 4454Analytical ultracentrifugation, 3970Anandamide, 259, 4724, 6343ANCA, 5305Anchorage dependence, 1047Angiogenesis, 1227, 1597, 2569, 3797, 5338Angiotensin II, 1579, 4265, 4349, 5100Angiotensin II type 1 receptor, 1579Angiotensin type 1 expression, 281Anhydrobiosis, 4093, 49738-Anilino-1-naphthalene-sulphonic acid, 4701Animal models, 5704Anion channel, 4991Anion exchanger, 517, 2105Anion transport activity, 2105Anisomycin, 3701, 6459Anisotropy spectrum, 2071Ankyrin repeat, 6796Annexin A2, 203Antibacterial, 5157Antibacterial peptides, 1917Antibacterial target, 4903Antibiotic, 728Antibiotics, 955, 2065, 6423Antibiotics selectivity, 948Antibody, 6049

Antibody recognition, 4449Anti-cancer peptide, 1187, 6128Anticodon-binding domain, 1441Antiestrogen, 4278Anti-Fas, 1311Antifreeze protein, 1493Antifungal, 1973Antigen processing, 4413Antigen recognition, 3336Antigenic load, 2035Anti-HIV-1 drugs, 2294Antimicrobial peptide, 3421, 4443, 6128Antimicrobial protein, 2445Antimycobacterial activity, 4903Antioxidant, 2669, 3029, 4219Antioxidant enzyme, 2327, 2541, 3411Antioxidative enzymes, 6265Antiquitin, 3759Antisense, 1411Antitermination, 4145Antitumor, 3437, 3683Antitumor activity, 2663Anti-tumor ribonuclease, 265Antiviral defense, 5858Antiviral drugs, 1376Antiviral immunity, 5965AOS production, 4879AP-1, 433, 2177AP-2, 1715, 2177AP1, 3547ApbE protein family, 4605Apicoplast, 6433Apigenin, 145Apo2L/TRAIL, 6217Apolipoprotein A-I, 5074Apolipoprotein E, 1759, 6411Apomyoglobin, 1503Apoptosis, 90, 185, 191, 517, 604, 723, 733, 1279, 1311, 1324,

1469, 1477, 1523, 2111, 2149, 2364, 2411, 2693, 2913, 3090,3297, 3437, 3515, 3646, 3695, 3744, 3932, 4149, 4219, 4259,5084, 5105, 5152, 5313, 5379, 5407, 5559, 5651, 5809, 6079,6191, 6217, 6279, 6295, 6444, 6459, 6604, 6681, 6699, 6814,6885

Apoptosis repressor with caspase recruitment domain, 2411AppA, 4329Apple condensed tannin, 4485Aquaporin, 3872, 4417, 5549, 5814Aquaporin 0 (AQP0), 6745Arabidopsis, 5889Arabidopsis, 415, 1167, 1515, 1545, 2648, 2842, 3239, 3427, 4666,

4808, 5723, 5814Arabidopsis thaliana, 337, 783, 1129, 1243, 2161, 3246, 3619, 4454,

4479, 6067LL-Arabinose isomerase, 1261Arachidonic acid, 2533N-Arachidonoylethanolamine, 47242-Arachidonoylglycerol, 259, 6473ARC1, 969A7r5 cells, 6611Archaea, 1020, 2319, 5281, 6865Archaeal, 5521Archaeal phototaxis, 3147Archaeoglobus fulgidus, 4600ARF, 343LL-Arginine, 1079Arginine decarboxylase, 1557Arginine kinase, 1688, 6756Argonaute, 5822, 5841, 5879, 5899Aryl hydrocarbon receptor, 6403Arylamine N-acetyltransferase, 4719ASAP1, 5741ASB, 6796Ascorbate, 677Aspirin, 3152ASPP1, 1587ASPP2, 1587Assembly, 3619Asthma, 173Astrocytes, 6147Asymmetry, 5850

60 Subject Index Volume 579

Ataxia, 2715ATF-2, 2795Atherosclerosis, 245, 4713, 6537AtHMA4, 1515ATM, 157Atomic force, 1702Atomic force microscopy, 473, 2001ATP, 1625, 2469, 5407ATP binding, 6875ATP-binding cassette A1, 6537ATP-binding cassette protein, 409ATP-binding cassette transporter A1, 4713, 5299ATP-binding cassette transporter G1, 5299ATP-dependent protease, 6846ATP synthase, 523, 5114, 5769, 6875ATP synthesis mechanism, 523ATP2C1, 2021ATPase, 1267, 4955Aurora kinase, 3385Autism spectrum disorder, 6587Autoantibody, 2873Autocatalytic activation, 1285Autoimmunity, 586, 2261, 2564, 3297Autophagic death, 723Autotransporter, 1177Auxin, 5923Auxin transport, 5399avANT, 11Average size/complexity score, 5205avPGC-1a, 11avUCP, 11AXBBXB motif, 1338Axon guidance, 3821Axon sprouting, 1055Axotrophin, 609

B

B cell adaptor for PI3-kinase, 2986Bacillus, 3175Bacterial luciferase, 4701Bacterial photosynthetic reaction center, 712Bacterial surface display, 1177Bacterial wilt disease, 2077Bacteriochlorophyll, 1983Baculovirus, 385BAD, 3090Baicalein, 409Band 3, 2105Band-pass filter, 5461Barrier function, 4851Base catalyst, 745Basement membrane, 4792Basic helix–loop–helix transcriptional repressor, 1509Batrachotoxin, 4207Bax, 3695, 4259, 5152Bax channel, 6191BBXB motif, 1338BchU, 1983Bcl-2, 191, 1469Bcl-2 family, 3646Bee venom phospholipase A2, 1658Behavioral analysis, 5704Benchmarking, 1802Benzo(a)pyrene, 1904Benzo[a]pyrene, 63382030-O-(4-Benzoylbenzoyl)-adenosine 50-triphosphate, 3783Beta amyloid, 6737Beta cells, 6199Beta-cell specific knockdown, 3107B7-H1, 6259BH3-only, 5603Biarsenical, 927Bilateria, 5024

Bilayer lipid membrane, 5675Binding, 976, 5035Binding affinity, 6659Binding enthalpy, 2933Binding entropy, 2933Binding motifs, 3342Bioactive lipid, 4020Biochemical reaction network, 1846Biochemistry, 5899Bioenergetics, 6361Bioinformatics, 885Bioinorganic chemistry, 4287Biolistic transfection, 2166Biological effect, 4829Biological pathways, 1872Bioluminescence, 808, 2973, 4389Bioluminescence resonance energy transfer, 648Biomarker, 1878Biomineralization, 3765Biomolecular networks, 4520Biophysics, 6361Biosensors, 5746Biosynthesis, 469Bioterrorism, 5361Biotin, 5040Black lipid membrane, 1625Blastocladiella emersonii, 4355Block-diagram, 1846Blocker, 2939Blood antioxidant power, 2759Blood pressure, 4997Blue copper proteins, 5223Blue light receptor, 4329Blue native polyacrylamide gel electrophoresis, 3619BLUF, 4329Boiling-solubility, 4887BolA, 591Bombina maxima, 4443Bone morphogenetic protein, 4615Boolean network, 1859Bordetella trematum, 18Borna disease virus, 2686Botulinum neurotoxin, 5361Bovine seminal plasma proteins-A1/A2, 2933Bovine spongiform encephalopathy, 638Bovine vitreous lipid factor, 4020Bow-tie structure, 5461Bradykinin, 25, 2051Bradykinin 1–5, 25Bradykinin B2 receptor, 6365Brain ageing, 6147Brain specific, 3674Brain tumor, 39658-Br-cAMP, 5635Breast cancer, 2995, 3932, 4149, 4278, 5535Breathing, 5507Brefeldin A, 3607Brown adipocyte, 1670Brown adipose tissue, 5680Bruchids, 5616Bruton�s tyrosine kinase, 4131Bud emergence MSB1 interacting 1, 3534Budding yeast, 512, 723Bursicon, 2171

C

13C and 14C labelling, 469C tail, 5227Ca2+, 4949Ca2+ binding, 4707Ca2+ channel, 768, 2597Ca2+/H+ antiporter, 2648Ca2+ imaging in single nerve terminal, 768


Ca2+-independent eNOS activation, 393Ca2+ transporter, 2727c-Abl, 2986Cachexia, 1646Caco-2, 792, 3069, 4671Caco-2 cell, 1653, 1923, 2226, 2499Cadherin, 6060Caenorhabditis elegans, 53, 3063, 3287, 5858, 5932Caenorhabditis elegans PMR1, 778Caffeine, 157CAI, 5333Calcineurin, 749, 1591Calcium, 1008, 1034, 1545, 1607, 2087, 2364, 4361, 4407, 5697, 6451,

6890Calcium-activated potassium channel, 1675Calcium ATPase, 2051Calcium (Ca2+), 1539Calcium/calmodulin-dependent protein kinase II, 251Calcium channel, 671, 2693, 3159, 3907, 6667Calcium imaging, 3783Calcium ion, 1124, 1551Calcium oscillations, 5461Calcium transport, 2648Calmodulin, 803, 1545, 1591, 1683, 3885, 4361Calmodulin-binding protein, 1545, 1683, 3885Caloric restriction, 2009, 6809Calpain, 3287, 6745Caltractin, 4355CaMBP-10, 1683cAMP, 133, 1136, 1911, 2973, 4966cAMP-dependent protein kinase, 251cAMP-dependent protein kinase A, 4417Cancer, 586, 604, 1376, 1417, 1779, 2231, 3317, 5589Cancer cachexia, 717Cancer cells, 2411Cancer genome, 1884Cancer metastasis, 3731Candida albicans, 5217Canine parvovirus, 385Cannabinoid, 259, 768, 5084, 6473Cannabinoid receptor, 6885Capsaicin, 5135Capsid-like particles, 5211Capsid protein, 5663Capsid structure, 5211CAR, 6733Carbohydrate-binding module, 4324, 5466Carbohydrate specificity, 6775Carbon monoxide, 469Carbonate radical anion, 245Carbonyl, 6870Carbonyl reductase, 3085Carboxyl terminus of the heat shock cognate protein 70-interacting

protein, 6559Cardiac cell, 3029Cardiac contractility, 4843Cardiac fibroblasts, 2533Cardiac muscle, 1079Cardiac myocyte, 517Cardiolipin synthase, 2161Cardiolipins, 6031Cardiomyocyte, 1579, 5163, 6060, 6444Cardiovascular disease, 3303Carnitine palmitoyltransferase II, 2040Carnivorous plants, 5729b-Carotene ketolase, 6111Carotenoid, 4012, 6111Carotenoid biosynthesis, 2125Cartilage, 3323Caspase, 265, 604, 723, 733, 2149, 2364, 3287, 5559, 6217Caspase activation, 6147Caspase-3, 145, 4187Caspase-8, 4187Caste, 1365Catalase, 4402, 5785, 6295, 6809Catalysis, 2830Catalytic Cu center, 4605Catalytic dyad, 2991Catalytic quinonoid, 5175Catalytic site bE, 523

Catalytic site identification, 5466Catechins, 4219Catecholamines, 5494b-Catenin, 4837b-Catenin/Tcf signaling, 2965Cathepsin, 1285, 2149, 3287, 4309Cathepsin D, 2759Cation channel, 2087Cation efflux, 4165Cationic lipid, 2635Cationic transfection lipids, 1291CB1 receptor, 6343CB2 receptor, 5084Ccc2, 1117C2C12 cell, 2236cCMP, 661ccn2, 3751CCR5, 1751CCV, 2177CD14, 1707, 5631CD184, 3691CD248, 2569CD4, 162, 3691CD40, 1951CD45, 6355CD68, 5631CD8, 3336CD95, 5559cda1+, 2737Cd2+ accumulation, 2727Cdc42, 5040Cdc25Mm, 6851CDEIII, 2519Cdk 4 and BrdU, 4591Cdk inhibitor p27, 1047CDK11p58, 3579cDNA microarray, 3941cDNA sequence, 4443C/EBPa deficient mouse, 4562C/EBP-b, 5785b-cell, 5241Cell adhesion, 5589, 6169Cell cycle, 615, 1001, 1047, 1523, 3090,4219, 4591, 5275, 6251, 6529, 6604Cell cycle progression, 4659Cell death, 4459Cell detachment, 3899Cell differentiation, 2416Cell division cycle 24, 3534b-Cell dysfunction, 1446Cell fractionation, 6581Cell integrity pathway, 6186Cell invasion, 6023Cell lineage decision, 318Cell membrane, 2001Cell migration, 5313Cell morphogenesis, 6311Cell nucleus, 1465Cell polarity, 1417Cell proliferation, 2416, 2919, 2995, 3674, 6251Cell regulation, 5265Cell shape, 100Cell signal transduction, 5265Cell surface marker, 3473Cell volume, 3376, 5791Cell wall, 5181Cell wall modifying proteins, 2451Cell–cell adhesion, 6179Cell-cycle-dependent element, 1488Cell-penetrating peptide, 4498, 4873, 5217Cellular energetics, 1765Cellular prion protein, 6333Cellular prion protein expression, 741Cellular prion protein physiology, 741Cellular senescence, 4055, 4897CENP-B box, 2519Central Dogma, 1779Central nervous system, 3783Centrifuge column, 2250Centrin, 4355Centromere, 2519


Centrosome, 3278, 6621Ceramidase, 1249Ceramide, 1759, 4383, 5571Ceramide kinase, 4383Ceramide 1-phosphate, 3744, 4383Cerebellar degeneration, 2715Cerebellar granule neuron, 2693Cerebellar membranes, 2051Cerebral amyloid angiopathy, 2185Cerebral cortex, 6333CFTR, 3392CFTR protein, 483CGG-repeat, 2702cGMP, 4349Chagasin, 1573Chain length selectivity, 2383Chalcone isomerase, 6074Channel, 5697Channel block, 4207Channel gating, 4207Channeling, 3467Chaperone, 1469, 1935, 2254, 2261, 3063, 4235, 4242, 5713, 6055Chaperonin, 3718Charge effect, 1453Charge substitution, 3574Chemical carcinogenesis, 3560Chemical genetics, 2463Chemical modification, 3115Chemokine, 1597, 5293, 6044Chemokine receptor 1, 6044Chemokine receptor 2, 1597Chemokine receptor 3, 1597Chemo-prevention, 1765Chemotaxis, 6044Chemotherapy, 2191Chick embryo, 2416Chicken embryo fibroblast cell line, 6705Chimeric transposase, 6205Chitin deacetylase, 2737Chitin secretion, 6827Chitinase, 5616Chk2, 157, 2604, 3683Chlamydia pneumoniae uracil DNA glycosylase, 2897Chlamydomonas, 819Chloride, 2087Chloride channel, 517Chloride transport, 3979Chlorophyll, 712Chlorophyll antenna, 2289Chlorophyll fluorescence, 4201Chloroplast, 1343, 2307, 4991Cholecystokinin, 1911Cholesterol, 5299, 5512, 6411Cholesterol efflux, 2933, 4713, 6537Cholesterol secoaldehyde, 6444Choline phospholipid, 2933Chondrocyte, 2919, 4837Chondrodysplasia, 3323Chondrogenesis, 4837CHORD, 421Choroidal neovascularization, 6084Chp-1, 421, 4513Chromaffin cell, 2597, 5145Chromatin, 895, 3258, 3731, 5553Chromatin dynamics, 325Chromatin maintenance, 757Chromatin remodelling, 757, 2203Chromatin structure, 1465, 3639Chromium, 1458Chromodomain, 488Chromogranin A, 222, 5145Chromogranin B, 222, 5145Chromosome, 3258Chrysin, 705Chytridiomycete, 4355Cigarette smoke extract, 733Ciliary neurotrophic factor, 4317Circadian rhythm, 808, 3246, 3555Circular dichroism, 823, 4701Circular DNA, 3095, 5119

Cis-element, 3639Cisplatin, 327811-cis Retinal, 5414Citrullination, 4088Citrus, 1665c-jun, 433c-Jun activation domain binding protein-1, 1693CKLFSF8, 6375Clamp loader, 863Clathrin, 5734Claudin, 6179CLC chloride channel, 1149ClC family, 4991c-Cleavage site, 2907e-Cleavage site, 2907CLK1, 2137CLN2 protein, 1383Clock, 3555Clp, 3525ClpB80, 4235, 4242ClpB95, 4235, 42423CLpro, 6089Clr4, 5872Cluster organization of ion channels, 5675c-myc, 1424CNG channels, 1968Coactivators, 909Coat protein, 4955Cobalt enzyme, 6140Cobra cardiotoxin, 3169Co-chaperone, 421Co-culture, 6653Coding potential, 5281+2 Codon, 995Codon 129, 2589Codon adaptation index, 5205Codon context, 995Codon degeneracy, 6499Codon usage, 30Coelenterazine, 1008Coeliac, 4851Coenzyme B, 1741Coenzyme M, 1741Co-expression, 3141Cofactor specificity, 661Coiled-coil, 6121Coiled-coil motif, 441Cold acclimation, 11, 4887Cold exposure, 1978Cold shock domain, 4887Cold shock domain protein, 5372Cold stress, 3842, 5697Co-lipids, 1291Collagen, 53, 2507, 3323, 4529, 6101Collectins, 4449Colloidal gold, 6581Colloidal particles, 3095Co-localization, 1607Colon, 792, 6135Colon cancer, 71, 3497Colon cancer cell, 4213Colonic hyperproliferation, 3497Colony formation, 4757Colorectal cancer, 5123, 6179Combined feature, 3444Comet assay, 3131Common receptor, 1338Comparative genome analysis, 1839Comparative genomics, 591, 1839, 2171, 4470Comparative modelling, 1203, 1968Comparative simulation, 5549Competitive inhibition, 4861Complex, 4585Complex I, 2485, 3164, 4861, 4892, 6909Computational biology, 1878Computational cell biology, 3043Computational modeling, 1891, 6289Concatemer, 5507Confinement, 2197Confocal fluorescence microscopy, 1255, 1759


Confocal microscopy, 3183Conformation, 2397Conformational change, 2197, 2953, 4492Conformational flexibility, 4600Conformational switch, 621Conformational transition, 2679, 3596Congenital muscular dystrophy, 4792Coniferyl aldehyde, 2802Conjugation, 3837, 5343Connective tissue growth factor, 2576Connexin-43, 3991Conotoxin, 671, 3881Conserved hypothetical protein, 215Constraint-based approach, 1867Contractile ring, 6311COP9 signalosome, 1047, 1693Copper, 245, 2307Copper ATPase, 3589Copper homeostasis, 3589Copper ions, 6486Copper metabolism, 741Copper uptake, 5223Copper(I), 5287Copper, zinc superoxide dismutase, 245Copper/zinc superoxide dismutase, 3613Co-refolding, 3075cor epitope, 813Corneal epithelium, 6569Cornified envelope, 6870Coronavirus, 5663, 6763Coronavirus E protein, 3607Cortactin, 577Cortex, 3613Cosuppression, 5940Cotinine, 2480Cotranslational folding, 3207Coupled ET/PT, 2026Coupling, 3984COX-2, 5430CP43-Arg320, 3190CpG, 4302CPI-17, 4271CR4–5, 127C-Raf kinase, 464Crassostrea, 313, 1688Creatine kinase, 1688, 6756CREB, 4337c-Rel, 141CRFR2, 4259Critical pressure, 976Crm1, 6621Cross-presentation, 1658Cross-reacting epitope, 1208Cross-reactivity, 3807Cross-talk, 3539Crowding, 2197crtO, 6111crtW, 6111Cryptogein, 4879Cryptophytes, 1129aB-crystallin, 3777, 5419Crystal structure, 895, 1154, 2821, 4324, 5773, 6505, 6543, 6775Crystallography, 215Csk, 3497CSR2, 6809CTCF, 1424Ctenophora, 5024C-terminal arm, 4600ctgf, 3751Ctk1, 5318Cu(II) reduction, 3131CuA center biogenesis, 4605CUL-dependent ubiquitin ligase, 3239Cu+-homeostasis, 1117Cul5, 6796Curcumin, 2965Cuticle, 6827Cuticle formation, 53Cutinase, 1177Cu/Zn superoxide dismutase, 2307

CXCR4, 5293CXXC, 1117Cyanide, 469Cyanobacteria, 275, 1613, 2125, 3565, 6111Cyanobacterium, 1235Cyclic adenosine monophosphate, 832Cyclic AMP response element binding protein, 1534Cyclic nucleotide, 2679Cyclic peptide, 4813Cyclin B1, 1001Cyclin D1, 145, 4055, 4591Cyclin D2, 5275Cyclin-dependent kinase inhibitor, 1523, 6529Cyclin E, 6621Cyclin T1, 3100Cyclodextrin, 1707c-Cyclodextrin, 4333Cyclo-oxygenase, 2551Cyclooxygenase-2, 705, 6279CYP1A1 induction, 229Cystatin, 1573Cystatin C, 2759Cysteine desulfurase, 6786Cysteine protease inhibitor, 1573Cystic fibrosis, 3979Cystine knot, 2171Cytidinediphosphate-diacylglycerol, 2161Cyto D, 1311Cytochrome bo3 oxidase, 3014Cytochrome c550, 3190Cytochrome c, 2491, 5105Cytochrome c6, 2891, 3565Cytochrome c oxidase, 2026, 3565Cytochrome f, 2891Cytochrome P450, 2215, 3669, 5582, 6733Cytochrome P450 2A6, 2480Cytochrome P450 2E1, 6895Cytokine, 191, 1693, 3055, 3660, 4911, 6355, 6403Cytokinesis, 2387, 6311Cytomegalovirus, 1658Cytoplasmic volume, 433Cytoskeletal dynamics, 473Cytoskeletal reorganization, 4038Cytoskeleton, 100, 203, 441, 4175, 4781, 6121, 6673Cytoskeleton dynamics, 655Cytosol, 1034Cytosolic phospholipase A2a, 3975Cytosolic prostaglandin E2 synthase, 4187Cytotoxicity, 1477, 3029, 3947, 6251Cytotoxin, 6859CZH2, 1039

D

3D structure modeling, 9763D view, 5145Damp-wood termite, 1365Data integration, 1802Database potentials of mean force, 5542Databases, 690Daxx, 2883DC maturation, 6159DCL1, 5923DC-SIGN, 2901, 6159DDRT-PCR, 4943DDT, 6317Deamidation, 2830Death domains, 3920Decay rate, 4701Dedifferentiation, 1089, 4837Defensin, 162Deglycosylation, 823Degradation, 5217, 6428, 6511Dehalogenase, 4249


Dehydration, 1394Dehydron, 5718Deiodinase type II, 4654Delayed luminescence, 6101Deletion phenotype, 1802Delivery, 5996Delta intracellular domain, 5798Dendritic cell activation, 6549Dendritic cells, 5135, 6159Dendritic cell vaccine, 1658Dendritic spine, 6834Densin-180, 506115-Deoxy-D12,14-prostaglandin J2, 6279Dephosphorylation, 4333, 5626Der f 2, 1988Dermatophagoides farinae group 2 major allergen, 1208D6-Desaturase, 2744Desiccation, 4973Desiccation response, 4973Desiccation stress, 4093Desiccation tolerance, 4093Desmin, 3777Desulfovibrio gigas, 4803Detergent solubilization, 5765Detoxification, 4719Deubiquitinating enzyme, 4867Deubiquitination, 3885Development, 318, 3789, 4465, 4843, 5651, 5911Developmental transitions, 5923Dexamethasone, 229, 1534, 3947Dextran, 4739Dextransucrase, 4739Diabetes, 1085, 1417, 3555Diabetes mellitus, 1143Diabetic retinopathy, 4265Diadenosine pentaphosphate, 6223Diagnosis, 638, 3807Dialysis, 5035Diaphanous-related formin, 441Diaphragm, 1079Diauxic shift, 5318Dicer, 5822, 5879, 5950, 5974Dicer-like protein, 5899Diclofenac, 4213Dictyopterin, 3085Dictyostelium, 1745, 308511,110-dideoxyverticillin, 3683Dielectric permittivity, 6101Dielectric spectroscopy, 6101Dietary polyphenol, 1653Differential interaction, 3001Differentiation, 615, 1213, 2788, 3183, 5911, 6060Differentiation and undifferentiation, 534Digalactosyldiacylglycerol, 36192,3-Dimethyl-5-phytyl-1,4-benzoquinol, 1357Dimer, 5769Dimerization, 1267, 3855, 4867, 5582Dinitrogenase reductase, 5751Dinuclear metal center, 6140(Di)nucleoside polyphosphates, 6223Dipeptide composition, 34442,3-Diphosphoglycerate, 6151Dipolar R-factor, 5542Dipole orientation, 2071Direct interaction, 4417Disabled-2, 4395Disease, 5911Dishevelled, 3539Disialoganglioside GD3, 3009Distance restraints, 1968Disulfide bond, 4600Disulfide bridge, 4813Disulphide assignment, 30483H-1,2-Dithiole-3-thione, 3029Divalent cation transporter, 2727Divalent metal transporter 1, 1923DLP, 5365DNA, 4302, 5035DNA assembly, 3095DNA-binding, 5454

DNA-binding activity, 3141DNA-binding protein, 1935, 3707DNA binding specificity, 4535DNA-chip, 4063DNA compaction, 5119DNA condensation, 3095DNA damage, 4978DNA damage checkpoint, 157DNA demethylation, 5889DNA enzyme, 554DNA glycosylase, 5889DNA methylation, 1587, 4610, 5889, 6395DNA methyltransferase, 6395DNA microarray, 1089, 1732, 2847DNA morphology, 3095DNA polymerase, 873DNA repair, 95, 1350DNA replication, 863, 877, 6529DNA sequence recognition, 6616DNA sequence variation, 2040DNA sliding clamp, 863DNA synthesis, 5798DnaJ, 5734DnaJ-like protein, 507DnaK-system, 5713DNAPK, 6350DNaseI, 655DNAzyme, 554DOCK10, 1039DOCK11, 1039DOCK9, 1039Docking, 627, 2939, 3503Docking and NMR, 4585Docking simulations, 6726Dogfish shark, 5527Dolichol, 6564Domain coupling, 5443Domain interactions, 4367Domain structure, 5466, 5781Domain swapping, 2663Dominant mutation, 4622Dominant negative mutants, 6851Dopa decarboxylase, 5175Dopamine metabolism, 1197Doppel, 2715Dosage compensation, 3258Double-stranded RNA, 5858Down syndrome, 3613Downregulation, 1579Doxorubicin, 4635DP-1, 3983D-QSAR, 4297dra, 5751Drosera adelae, 5729Drosha, 5822Drosophila, 6317Drosophila, 3842, 4131, 5129, 5365Drosophila melanogaster, 3246Drug delivery, 4498Drug design, 1338Drug design in silico, 6659Drug development, 1878, 5996Drug discovery, 1872Drug metabolism and transport, 6733Drug resistance, 4635, 6681Drug transport, 3984dSmad2, 4615dsRBD, 5841dsRNA, 1498, 5932DT-diaphorase, 677dTTP, 1376Dual coenzyme specificity, 763Dual compartment proteins, 4254Dual targeting, 337Dunaliella maritima, 5002Duox1, 4911Duox2, 4911Duplication, 337Dynamic programming algorithm, 3397Dynamics, 959, 1808, 1846, 4781


Dynamin, 1109Dystroglycan, 493, 2359, 4792Dystrophic chicken, 2359Dystrophin, 5365

E

E3 ligase, 5007Em, 500EAP1, 2433Early differentiation, 2731E75B, 49434E-BP1, 4763E1B-AP5, 2752E-cadherin, 207Eckol, 6295E. coli, 943, 6423Ectoine, 4775Eexpressed sequences tag, 690Efavirenz, 379Effect, 1187Efficacy, 1878EF-G, 5439EF-hand, 4355Efhc1, 819EF-Tu, 5439, 6383EGFR, 6375Eicosanoids, 3691eIF1A, 4943eIF4E, 2433Electron acceptor, 3493Electron microscopy, 1306, 3253, 3569, 5241, 5769, 6581Electron paramagnetic resonance, 2491, 3164, 3814, 4605Electron tomography, 933Electron transfer, 712, 3014, 5582Electron transport complex I, 6781Electrophoretic mobility shift assay, 3525Electrospray ionization mass spectrometry, 2807Electrostatic dehydration, 6635Electrostatic energy computation, 3190Electrostatic interactions, 4249, 5247Electrostatic potential, 4297Elongation factor, 3467, 5439Elongation factor 1, 6049Elongation factor G, 4492Embryo, 2709Embryonic lethal, 1191Emesis, 4407Empty artificial virus-like particle, 6549Enabled/vasodilator-stimulated phosphoprotein homology-1

domain, 1161Enantiomer, 4454Endocannabinoids, 6343Endocrine disruptor, 541Endocytosis, 2177, 2635, 3231, 3731, 4309Endogenous clock, 3246Endoglucanase, 3525Endometrial cancer, 2959Endoplasmic reticulum, 1751, 2226, 2277, 3063, 3183, 5227, 5621,

6564Endoplasmic reticulum membrane, 916Endoplasmic reticulum-localization, 4751Endopolyphosphatase, 2014Endosialin, 2569Endosome, 2334Endostatin, 36016-O-Endosulfatase, 6493Endothelial, 1951Endothelial cell, 105, 473, 1227, 1272, 5809Endothelial progenitor cell, 2731, 5338, 6060Endothelium-dependent relaxation, 393Endotoxicity, 6519d-Endotoxin, 3508Endotoxin, 18

Energy dissipation, 3136Energy landscape, 2254Energy metabolism, 5163Energy minimization, 4207Energy transfer, 4571Enhanced green fluorescent protein, 385eNOS, 733, 1272Enoyl-acyl carrier protein reductase, 5157Ensembl, 690Entamoeba histolytica, 1573, 6395Entner–Doudoroff pathway, 6865Envelope membranes, 1343, 4991Enzymatic activity, 4654Enzymatic characterization, 6879Enzymatic cross-linking reaction, 2092Enzyme activity, 3891Enzyme adaptation, 597Enzyme assay, 2657Enzyme kinetics, 728, 4861Enzyme mechanism, 302Enzyme specificity, 4647Enzymology, 5582Eotaxin, 173Ephrin-A2, 1055Epidermal growth factor, 5313, 5723, 6289Epidermal growth factor receptor, 122, 1301, 3043, 4069Epidermis, 6479Epigenetic factors, 597Epigenetics, 5872Epithelial barrier, 6827Epithelial ovarian cancer, 1311Epithelium, 3725Epitope, 2261Epitope mapping, 3508EPR, 3081, 4577, 4729EPR spectrum, 500EPS1, 2277Equilibrium model, 3043ER, 5814Erbin, 5061ERK, 577, 4337, 5635, 6721ERK1/2, 5100ERK1/ERK2, 236ER-localization, 4459Erm, 66Erythrocyte, 5095Erythrocytic stages, 6151Escherichia coli, 373, 995, 2313, 3164, 4107, 4629, 5187Esophageal squamous cell cancer, 4069EstA, 1177Esterase, 2082, 2156Estrogen, 449, 2995, 4856Estrogen receptor, 3731Ethanol, 671, 3651, 6895Ethanol induction, 1498Ethylene biosynthesis, 2458N-ethylmaleimide sensitive fusion protein, 6169ET-18-O-CH3, 6279Ets, 66, 2811Ets-1, 2475, 3941E3 ubiquitin ligase, 1015Eukaryotic expression, 3759Eukaryotic initiation factor, 1167Eukaryotic mRNA, 6803EVB, 2026Evolution, 313, 963, 1828, 2267, 3789, 4344, 5024, 5365, 5443Evolution of biological clocks, 808Evolutionary conservation, 4131Evolutionary novelty, 1772Excitation energy trapping, 4787Excluded volume effect, 1783Exercise, 2045Exocytosis, 4692, 6575Exocytotic domain, 6575Expansin, 2451Expressed sequence tag, 2709Expression, 259Expression profile, 1732Expression regulation, 3691Expression vector, 153


Extracellular matrix, 549, 3323, 3899, 4529Extracellular matrix molecule, 534Extracellular matrix proteins, 6879Extracellular signal-regulated kinase, 90Extracellular signal-regulated protein kinase, 1904Extracellular-signal-regulated kinases 1/2, 1665Extracorporeal shock waves, 68394.1 ezrin radixin moesin, 5089

FF4/80, 5631FABPpm, 2428F-actin, 2339Factor V, 3310Familial hypercholesterolemia, 4503Family 31, 4324Family I.3 lipase, 4707Fanconi, 4610Farnesoid X receptor, 4076Far-red chlorophyll, 4017Far-red light, 1613Fas-associated death domain, 6465Fas binding, 6749Fasting, 4076, 4654FAT/CD36, 2428FATP1, 2428F1-ATPase, 2250Fatty acid, 1765, 2284, 5582Fatty acid elongation, 4459Fatty acid oxidation, 6581Fatty acid synthesis, 5157Fatty acid transport, 2428Fatty acid uncoupling, 1978FBPase, 1607FCP1 phosphatase, 683Feedback, 1846Fe-only hydrogenase, 5055Ferredoxin, 2319, 4585, 6433Ferredoxin NADP+-reductase, 4585Ferric reductase, 2817Ferric uptake regulator protein, 5454Ferriprotoporphyrin IX, 5095Ferritin, 4729Ferroxidase, 4729Ferryl, 63612Fe–2S, 2215F0F1, 6875Fibril, 3323Fibril formation, 1503Fibrillization, 1453Fibrillogenic aggregation, 6635Fibrinolysis, 3303Fibroblast, 2569, 6653Fibroblast growth factor signaling, 534Fibronectin, 4529, 6473Fidelity of DNA synthesis, 1435Filament formation, 3481FK506-binding protein, 1591FK-506 binding protein 38, 1469FKBP22, 5781FKF1 protein, 1067Flavin, 2215, 4329Flavin reductase, 2817Flavodoxin I, 3802Flavoenzyme, 2203Flavonoid, 145, 409Flavonoid biosynthesis, 6074Flavoredoxin, 4803fldA, 3802Flower, 2709Flower color, 6074Flower development, 5923Flufenamate, 2087Fluorenyloxycarbonyl linker, 2439Fluorescence, 2397

Fluorescence bandshape, 2071Fluorescence correlation spectroscopy, 1961, 3336Fluorescence emission, 4571Fluorescence quenching, 4701Fluorescence resonance energy transfer, 916, 927, 2991, 5211Fluorescence spectroscopy, 916Fluorescence spectrum, 1008Fluorescent protein, 927Fluoxetine, 5105FM1–43, 6575FMN-binding protein, 215FMN cofactor, 2817FMN substrate, 2817Foam cells, 6537Focal adhesion, 455, 5589, 5651, 6169, 6251Focal complex, 5741Fold recognition, 1203, 3175, 5466Folding, 2589, 3515, 4235, 4242, 5713Folding kinetics, 5223Food allergy, 4485Footprinting, 6616Forkhead, 191Formin homology 2 domain containing protein 1, 441Forskolin, 4966Four-base codon, 6769Fourier transform infrared spectroscopy, 2546FR901228, 90Fractionation, 2334Fragile X syndrome, 2702Fragile X tremor and ataxia syndrome, 2702Fragment reconstruction, 1203Free energy, 5333Free fatty acid, 717, 1446Free radicals, 2541Free thiol, 4443FRET, 4374FRETS, 5013Fructan, 4647Fructosyltransferase, 1124, 4647FTDP-17, 241, 5704FTIR, 4329FT-IR microspectroscopy, 3433Functional classification, 3346Functional complementation, 1723Functional expression, 2161Functional genomics, 2878Functional group, 4685Functional interaction structures, 4520Functional proteomics, 661Fur, 5454Furin, 1149, 4813, 5621Fusion, 1602Fyn-T binding protein, 2339FYVE domain, 5542

G

G1 arrest, 1523Gbc, 122GABA, 4692GADD, 6604Gadolinium, 2087Gag–Pol processing, 379Galectin, 2058Galectin-3, 6749Gallate ester, 4219Galregulatory network, 597Game theory, 2254Gametogenetin binding protein 1, 559Gametogenetin binding protein 2, 559Gametogenetin protein 1, 559Ganglioside, 2185, 3381Gap junction protein, 4919Gas chromatography–mass spectrometry, 1332Gastric cancer, 1477


Gastrointestinal, 3646Gastrointestinal absorption, 5343Gating mechanism, 1968GC-ending codon usage, 6499GC–MS, 1332GCN2, 2433GCN4, 2433GDPNP complex, 4492GEF, 10392D-gel electrophoresis, 3777Gelatin, 4529Geldanamycin, 3019Gemcitabine, 6681Gender, 2541Gene array, 792Gene correction, 892Gene delivery, 2143, 2635Gene expression, 963, 995, 1365, 1613, 1802, 2514, 2557, 2609, 3651,

4829, 4919, 5535Gene expression level, 6499Gene expression profiling, 1213Gene family, 1884Gene fusion and evolution, 1441Gene length, 6499Gene network, 1859Gene ontology, 95Gene promoter, 1715Gene regulation, 892, 2811, 4470, 4911, 5858Gene regulatory network, 1867Gene repression, 5372Gene silencing, 1498, 5932Gene space, 3867Gene splitting, 3075Gene suppression, 5996Gene therapy, 153, 3965, 5759Gene transcription, 1488, 1715Gene transfer systems, 6191General transcription factors, 899Generalized ensemble algorithms, 5425Genetic code, 30Genetic encephalopathy, 6237Genetic networks, omics, 5325Genetic suppressor elements, 199Genetically modified rice, 1085Genistein, 3019Genital development, 4131Genome, 3867Genome divergence, 3355Genome semantics, 1779Genomics, 1795Genotype, 4928Genscan, 690Geobacillus stearothermophilus L1, 3461GGA and Tom1, 5385gifA, 1613GIRK, 3019Glial cell line-derived neurotrophic factor, 3789Glial cells missing a, 3991Glioma, 3674Global knockout, 3107a-Globin gene domain, 4746Globulin, 1085Gloeobacter violaceus PCC 7421, 2125, 3493Glomerular proliferation, 1249Glucagon-like peptide-1, 1085Glucan, 4739b-1,3-Glucanase, 6647b-Glucan-binding protein, 6647Glucansucrase, 4739Glucocorticoid, 229Glucocorticoid and mineralocorticoid receptors, 4465Glucocorticoid receptor, 5430Gluconeogenesis, 2795, 4076Glucose, 1765Glucose ester, 4454Glucose transport, 1653Glucose transporter-2, 5759Glucose uptake, 1458b-Glucosidase, 3075Glucosyltransferase, 4739

b-Glucuronidase, 1498GluR2, 4138GluR5 ligand-binding core, 1154GluRS, 969, 6383Glutamate 5-kinase, 6903Glutamate dehydrogenase, 2830, 4125Glutamate receptor, 4138Glutamate release, 768Glutamic peptidase, 2991Glutamine, 3376Glutamine synthetase, 5527Glutathione, 185, 677, 1477, 5803, 6115, 6265Glutathione-binding site, 2657Glutathione peroxidase, 667, 792, 6135Glutathione S-transferase P1, 4081Glutathione transferase, 2657GluTR, 6383N-Glycan, 71Glyceraldehyde-3-phosphate dehydrogenase, 48, 4333, 5095Glycerate dehydrogenase, 2009Glycerate kinase, 2009Glycerol, 6186Glycine max, 6647Glycogen, 1405, 2208, 3999Glycogen storage disease type I, 4713Glycogen synthase, 3999Glycogen synthase kinase-3, 3632Glycogen synthase kinase-3b, 6230Glycogen synthesis, 3632Glycogenin, 2208, 3999Glycolysis, 185, 357, 6151, 6814Glyconeogenesis, 1607, 5577Glycophorin A, 1633Glycoprotein, 823p-Glycoprotein, 3984, 5399Glycoprotein cleavage, 4751Glycoprotein hormone receptor, 2171Glycosaminoglycan, 1285, 5019Glycose uptake, 3632Glycoside hydrolase, 302, 5466Glycosyl-phosphatidylinositol, 59Glycosylation, 493, 2359, 4529, 6159Glycosyltransferase, 71, 2802, 4454Glycyl-tRNA synthetase, 1441Glyoxal, 5596Glyoxalase pathway, 6265G2/M arrest, 3683G2/M transition, 4757GN11 cell, 741Golgi, 1751, 4226Golgi apparatus, 3183Golgi-localizing, c-adaptin ear domain homology,

ARF-binding, 5385G-protein, 3107, 5746G-protein-activated inwardly rectifying potassium channel, 3019G-protein coupled, 803G protein-coupled receptor, 285, 1136, 2171, 2973, 5227, 6365G protein-coupled receptor kinase, 122G-protein coupling receptors, 6726gp120, 162gp130, 4317GPCR, 259, 349gpx-4, 667Granulosa cells, 2376Gravitropism, 1243Green fluorescent protein, 325Green sulfur bacteria, 1983GroEL, 1183GroES, 1183Growth, 6885Growth characteristics, 1723Growth control, 3829, 5517Growth factor receptor, 6388Growth hormone, 3152, 3669Growth potential, 433GRP94, 105GST pull-down, 2623GSTA4, 5691GSY2, 3999GT-ending codon usage, 6499


GTPase, 1109, 4966GTPase-activating protein, 5741GTPase-associated centre, 5439GTP-binding protein, 2821Guanidinium chloride denaturation, 3891Guanine nucleotide exchange factor, 343, 6851Guard cell, 827Gut associated lymphatic tissue, 6135Gymnemic acids, 4333

HHaem, 1061Hah1, 5287Hailey–Hailey disease, 778, 2021b-Hairpin, 5425Hairy and enhancer of split-1, 6199Half-of-the-site reactivity, 6017Halobacterium salinarum, 6595Haloperoxidase, 6247Halophilic adaptation, 6595Halophilic enzyme, 6595HAMLET, 6095Hammerhead ribozyme, 1619Handness, 6601Hanging mercury drop electrode, 5074Ha-Ras, 6459HAT-B, 4063Hat1, 4063Hat2, 4063H2AX, 1350HBO1, 3579HCC, 1089hCNK1, 648HCT 116, 5123HCT-116 cell, 3683HCV, 1089HDL, 5299HDM2, 2604Heart, 133, 2045Heart hypertrophy, 2615Heart mitochondria, 1625, 4724HEAT, 3214Heat capacity, 1261Heat shock, 1235Heat shock cognate protein 70, 1279, 6559Heat shock factor, 4513Heat shock factor 1, 6559Heat shock protein, 586, 2261, 6716Heat shock protein 100, 6395Heat shock protein 70, 1279, 1951, 6559Heat shock protein 90, 6559Heat shock response, 1935Heat shock transcription factor, 3842Heat stress, 3842, 5521, 6559Heavy-metal, 1117Hedgehog signalling, 1529HEK293, 6350a-Helix, 5247a-Helix formation, 3596Helix packing, 1633Heme, 1394, 5095, 6010, 6383Heme d, 4567Heme protein, 271, 2528, 5392Heme redox potential, 3190Hemoglobin, 4349Hemoglobin A, 627Hemozoin, 6010HEN1, 5923Heparan sulfate, 699Heparan sulfate proteoglycan, 6493Heparanase, 2334Heparin, 281, 2355Hepatic stellate cell, 3119Hepatitis B virus, 5211Hepatitis B virus capsid protein, 5211

Hepatitis C virus internal ribosome entry site, 79Hepatocellular carcinoma, 1089Hepatocyte growth factor, 1945, 4550Hepatocytes, 2087HepG2, 3381Hepsin, 1945Herbicide resistance, 728, 5773HERC1, 343Hereditary diseases, 1900hERG, 2939Herpes simplex virus type I, 6259Herpes-virus-associated ubiquitin-specific protease, 4867Herpetic stromal keratitis, 6259HER2/neu, 145, 4149Heterochromatin, 5872, 5940Heterochromatin protein 1, 4278Heterodimerization, 2926, 3503Heterodisulfide Reductase, 1741Heterogeneous nuclear ribonucleoprotein A1, 2623Heterologous expression, 1529, 2514, 4733Heterologous yeast expression, 783Heterotropic effector, 627Hexokinase, 827b-Hexosaminidase, 5501Hexose phosphates, 4044HgCl2, 4044HGFA inhibitor-1, 1945HGFA inhibitor-2, 1945HI hairpin, 6851HIF-1, 105, 2795HIF-1a, 529High-fat diet, 2284High light stress, 1235Higher plants, 4659Higher-order structure of DNA, 5119High-throughput experiment, 1828HIPK2, 5473Hippocampus, 1055, 3821Histamine, 6653Histamine receptor, 2475Histidine, 4671Histidine functional analysis, 745Histidine kinase inhibitor, 2065Histidine sensor kinase, 3970Histone, 325, 757, 895, 4088Histone acetylation, 3258Histone acetyltransferase, 909, 3579Histone deacetylase, 3731, 6395Histone deacetylase inhibitor, 1523Histone H2AX, 6338Histone methylation, 2203, 5872Histone methyltransferases, 909Histone variant, 895, 5553HIV, 3691HIV-1, 162, 1619, 2294, 3055HIV Tat protein, 3055HLA class II, 6055hnRNP, 2752, 4254HO-1, 5494Homeobox, 5024Homeodomain-interacting protein kinase 2, 3001, 6272Homodimerization, 2065Honey bee, 4961Hordothionin, 2301Horizontal gene transfer, 2451Hormonal regulation, 4856Hormone secretion, 6575Host defense, 4911House dust mite, 1988HPC2, 1220H+-PPase, 3625hpRNA, 5982Hsc70, 5734hScrib, 3725Hsp100, 4235, 4242Hsp104, 4235, 4242hsp27, 3777Hsp70, 507, 6716Hsp90, 421, 4513, 6350Hsp90 co-chaperone, 4187


hSPCA1, 2021HT-1080, 4055HT-29, 4671HT29, 5123hTERT, 127hTR, 127Human, 1923Human adipocyte, 41Human ARD1, 6428Human breast epithelial cells transformed with H-ras

(MCF10A-ras), 6279Human CC chemokine-4, 6044Human cells, 4873Human endometrial stromal cells, 5635Human gastric gland carcinoma cell, 1187Human immunodeficiency virus type 1, 379, 1435, 3100Human kallikrein 8, 6879Human Langerhans cells, 3660Human lens, 6745Human lung cDNA libraries, 6089Human lymphocyte, 2773Human melanoma, 2475Human telomerase reverse transcriptase, 1027Human thymidine kinase, 1376Hyaloid vascular system regression, 5481Hyaluronan, 2722HydE, 5055HydG, 5055Hydride transfer, 2863Hydrogen bond, 6635Hydrogen peroxide, 245, 4012, 4402, 4671Hydrogen sensor, 4287Hydrogenase, 1020Hydrophobic cavity, 1208Hydrophobic mismatch, 1633, 5247Hydrostatic pressure, 2847c-Hydroxybutyrate, 415Hydroxyectoine, 4775Hydroxyisourate, 4769Hydroxyl radical, 245Hydroxylase, 51705-Hydroxylysine, 5347(E)-4-Hydroxy-3-methylbutyl-2-enyl pyrophosphate, 38023-Hydroxy-3-methylglutaryl coenzyme A reductase, 31264-Hydroxynonenal, 50745-Hydroxytryptamine, 6721Hyperaccumulation, 4165Hyperinsulinism, 4113Hyperosmotic shock, 6186Hyperoxia, 3411Hyperphosphorylation, 6230Hypersensitive response, 2077Hypertension, 6439Hyperthermophile, 5521Hyperthermophilic archaea, 477Hyperthermophilic archaea, 3718Hypertonic sodium chloride, 5430Hypertonicity, 4973Hypertrophy, 1579Hypoosmotic, 207Hypo-osmotic shock, 3872Hypotaurocyamine kinase, 6756Hypothalamic-pituitary adrenal axis, 4465Hypothalamus, 4654Hypotonic, 207Hypoxia, 105, 529, 2669, 2795, 3797, 3991, 5170, 5680, 6084, 6428Hypoxia-inducible factor, 5170Hypoxia-inducible factor-1a, 2669, 3797, 4541, 6428

Ia7b1 Itegrin, 1079IAP, 3947IjB, 3947IjBa, 4797

ICAM-1, 2901ICAM-3, 2901Ice-growth inhibition, 1493Ice nucleation protein, 1493Identification, 4520Identity elements, 2629IF1, 995IgE, 3807, 4485IgE epitope, 1988IGF-1, 2376IGF-1 and breast cancer, 3195IGFBP-1, 2609IgG, 3960IIS6 segment, 6317IIS4–S5 linker, 6317IkB, 141IL-1, 4423IL-2, 141, 6641IL-22, 5791IL-4, 173, 6653IL-6, 4423, 5791Image analysis, 933Imflammation, 295Immune regulation, 609Immune response, 2833Immune system, 3487, 6403Immune system evolution, 4449Immunity, 699Immunization, 753Immunocytochemistry, 1235Immunofluorescence, 819Immunoglobulin fold, 4324Immunoglobulin superfamily, 2355Immunohistochemistry, 3183, 6135Immunoprecipitation, 6350Immunoproteasome, 2781Immunosenescence, 2035Implantation, 398Importin, 3214, 4949Imprinting, 4822In situ hybridisation, 6135In vitro translation, 2082, 2156Inactivation, 3881Inclusion, 571Inclusion body, 3433Indirubin, 529Induced-fit, 5773Inducible nitric oxide synthase, 6839Inducible shRNA expression, 5974Infection, 699, 3317Inflamm-ageing, 2035Inflammation, 2564, 3317, 3487, 5135, 5565, 6839Influenza-associated encephalopathy, 2040Information system, 1815Information theory, 3397Infrared spectroscopy, 469, 5199Inhibition by GTP, 4437Inhibitor, 1399, 2149, 2991, 4088, 6037, 6875Inhibitor jB phosphorylation, 6821Inhibitor screening, 4903Innate immunity, 3330, 4449, 6519Innexin, 4919Innovation, 1772Inorganic polyphosphate, 2014, 6846Inosine, 4044Inositol 1,4,5-trisphosphate, 2051Inositol 1,4,5-trisphosphate receptor, 2597Insertional mutant, 783Inside-out inhibition, 3899Insulator, 4746Insulin, 1085, 1509, 3152, 3195, 3632, 3927, 5759Insulin degrading enzyme, 2119Insulin exocytosis, 1602, 5241Insulin receptor, 3024, 6388Insulin resistance, 3024Insulin secretion, 2284, 6305Insulin signaling, 1458Insulin-like growth factor-1, 4309Integrase, 488Integrative omics, 1834


b1 integrin, 3899Integrin, 549Integrin-linked kinase, 4271Interaction, 2883, 3913, 5318Interaction map, 1821Interaction with substrates and inhibitors, 643Interaction-defective alleles, 1834Interactome, 1834, 6350Interferon, 2267Interferon-a, 6217Interferon gamma, 1101Interferon regulatory factor-1, 2781Interleukin 1 beta, 2551Interleukin-15, 717Interleukin-2, 2773Interleukin-4, 3953Interleukin-6, 4317, 6417Interleukin-8, 3953, 4671Internal initiation of translation, 6803Internalization, 5217Intersegmental muscle, 4943Intestinal epithelial cell, 2226Intestinal intraepithelial lymphocytes, 4485Intestine, 1923, 3317, 6479Intracellular Ca2+ signals, 2051Intracellular ion channel, 1149Intracellular kinases, 4099Intracellular space, 1783Intracellular trafficking, 1751, 6343Intramembrane proteolysis, 5723Intramolecular chaperone, 4430Intramolecular coevolution, 5443Intrinsic fluorescence, 4701Intrinsic pathway, 6147Intrinsically disordered protein, 3346Intron, 2945Intron-spliced hairpin, 4165Intronic ORF, 30Inulosucrase, 1124Invertase, 4647Invertebrate, 313Ion channel, 1143, 2939, 4856, 5675Ion channel gating, 3907Ion-pair formation, 4985Ion permeation, 4207Ionic strength, 1285Ionomycin, 4949Ionotropic glutamate receptor, 1154Ionotropic receptor, 5407Iopanoic acid, 4654IP, 3829IP3 signaling, 549Iranian scorpion Odonthobuthus doriae, 4181IRES, 6803IRF-1, 5487Iron, 773, 1923, 6543Iron deficiency, 6791Iron-oxo cluster, 4729Iron–sulfur centre, 1020Iron–sulfur cluster, 1930, 3164, 6543Iron–sulfur cluster assembly, 5236Iron–sulfur protein, 1741, 3737Iron–sulphur cluster, 6433Iron toxicity, 5697IscA, 6543Ischemia, 2111, 4591IscS, 5236IscU, 5236IsiA, 3253Islets, 6305Isochores, 3867Isoform, 493, 633Isoform of eukaryotic initiation factor, 1167Isolated myonuclei, 2051Isomerase, 5414Isomerization of insulin, 3927Isoprene synthase, 2514Isoprenoid biosynthesis, 6433Isoproterenol, 251, 5494ITR-1, 549

J

Jab1, 1047Jackknife test, 3444JAK2, 4337JAK-STAT pathway, 3669Janus kinase-signal transducers and activators of transcription, 1101JM4, 1751JNK, 6681JNK-P, 5691Junctional adhesion molecule, 2243Juvenile hormone, 4961Juvenile hormone analog, 1365

K

Kd(O2), 4567

Kainate receptor, 1154K+ channel modulation, 5129KDG aldolase, 6865KDG kinase, 6865Keratan sulphate, 5019Keratinocyte, 207, 3953Ki-1/57, 2615KIAA0147, 5061KIAA0601, 2203Kidney, 3317Kidney library, 6439Kinase, 577, 3271Kinase assay, 464Kinase inhibitors, 3385Kinetic parameter, 1688Kinetics, 983, 1453, 5713Kinetics of recombinant protein production, 3433Kir3, 3019KM miceTM, 5379Knockdown, 4937Knock-out, 3271Knock-out mouse, 1191, 3783Kreisler, 3547Kringles, 1565Kunitz domain, 1945KyoT2, 1220

L

L929 cells, 3947a-lactalbumin, 6095Lactate metabolism, 5152Lactobacillus reuteri, 1124Lactoferricin, 3421Lactosylceramide synthase, 3381LamB, 813Lamellipodium, 455Lamin, 6326Laminin, 2359, 4792Lano, 5061LANP, 363Lantibiotics, 1917LAR, 3024Large genes, 5365Large introns, 5365Largemyd mouse, 4792Laser capture microdissection, 1213


LASU1/MULE, 5603Late embryogenesis abundant protein, 4093Lateral diffusion, 3336Lateral root, 5399LC–MS, 2830LDL oxidation, 6486LDOC1, 604Lead cation, 6251Leaf development, 5923Leave-one-out cross-validation, 2878Legume lectin, 6775Leigh syndrome, 3770Leishmania, 5347Lens, 1213, 3547Leptin, 295, 1911Let-413, 5061Lethal gene, 398Lethality, 4642Leucine-rich repeat, 3674Leucine-rich repeats containing GPCR, 2171Leukaemia inhibitory factor, 609Leukemia, 2788Leukemia inhibitory factor, 4317Leukemia inhibitory factor receptor signaling, 4465Levansucrase, 1124Lewy body, 1197Lhca4, 2071Lifespan, 778, 4063Ligand binding, 271, 349Ligases, 6223Light harvesting, 275, 4787Light harvesting complex, 4201Light microscopy, 2001Lignin, 2802a-like toxin, 4181Limbal epithelium, 6569Linear interaction energy method, 2939Linear model, 241Linear programming, 3037Linker peptide, 2058Linoleic acid, 5157c-Linolenic acid, 2744Lipase, 1177, 2383, 3433, 6067Lipid, 6067Lipid analysis, 4459Lipid bilayer, 1675Lipid binding, 1208Lipid:DNA interactions, 1291Lipid kinase, 3427Lipid metabolism, 6105Lipid oxidation, 5571, 6486Lipid peroxidation, 1255Lipid phase separation, 4577Lipid–protein interaction, 2546Lipid raft, 1707, 2397, 5129Lipid transport, 3183Lipocalin, 773Lipofection, 1291Lipogenesis, 6105Lipoperoxidation, 4577Lipopolysaccharide, 699, 705, 1707, 4081, 6519Lipoprotein oxidation, 245Lipoxygenase, 3691Liquid chromatography-mass spectrometry, 2807Lithium, 1670LIV1, 427Liver, 95, 2722, 3126, 3849, 5759, 6581Liver development, 4562Liver regeneration, 4562Liver X receptor, 5299Living cells, 1255Localization, 2788Lon, 6846Long-acting peptide, 2439Long-chain polyamines, 3765Longevity, 4131Longin domain, 2842Loop ordering, 763LOV domain, 1067Lovastatin, 1272

Low energy chlorophyll forms, 2071Low molecular weight protein 2, 2781Low molecular weight protein 7, 2781LOX-1, 1951LPA, 1311L14 protein, 6859Lrp, 4629LRRC4, 3674LTR-retrotransposon, 488Luciferase, 4389Luciferase reporter, 808Lung cancer, 6681Lung cancer cell, 3829Lymph, 5343Lymphocytes, 3487Lysine, 2853Lysine residue, 4739Lysophosphatidic acid, 2919, 6611Lysosomal cysteine protease, 1285Lysosomal enzyme, 5501Lysosome, 1551, 2334, 6343Lysozyme, 2277, 3891Lysyl-tRNA synthetase, 2629LZT, 427

M

M1 muscarinic acetylcholine receptor, 6726MacroH2A, 5553Macrolide binding pocket, 3207Macromolecules, 5247Macrophage, 705, 1707, 1904, 4038, 4259, 4503, 4923, 5494, 5565,

5631, 6473, 6537Macrophage colony-stimulating factor, 1995Macrophage migration inhibitory factor, 1693MAD, 4615Mad homology 2 domain, 2853Maf, 3547Magainin, 5247Magnesium, 1625Magnesium ion, 2583Magnolol, 4337Magphinin, 6326Maize, 1243, 3867Major histocompatibility complex, 2261, 3336Major histocompatibility complex class I antigen processing, 2781Malaria, 655, 6151, 6433MALDI, 18, 3777Male germ cell, 357Malignancy, 3646Malonyl-CoA, 6581Malonyl-CoA decarboxylase, 6581Mammalian, 1034Mammalian actin binding protein 1, 2339Mammalian expression, 385, 1008Mammary cancer, 1665Mammary gland, 2097, 5651Mandibular morphogenesis, 1365Manduca sexta, 4943Manganese, 3081Mantle cell lymphoma, 6885Mantled, 2709MAP kinase, 236, 3024, 4692MAPK, 433, 3547, 3701MAPKs, 4081MAR, 4746Marine alga, 5002Markov model, 4297Mass assay, 2868Mass spectral library, 1332Mass spectrometry, 464, 885, 904, 943, 1917, 2208, 2485, 3048, 3401,

4309, 5236, 5454, 6350Mast cells, 6653Mathematical model, 621, 1900, 4361


Matrilin, 3323Matrix metalloproteinase, 2369, 3119, 3601Matrix metalloproteinase-9, 6451Matrix protein quaternary structure, 2686Maturation, 3660, 4292, 5055Max, 398Maxi-K, 2995Maximin, 4443MBD, 3481MCF-7, 5313Mcl-1, 5603MCM, 6529MDM2, 5473MD-2 related lipid-recognition proteins, 1988MDR, 5399mdx, 1079Mechanism, 868, 5809Mechanism-based inhibitor, 2458Mechanotransduction, 473Medea, 4615Mediator, 899, 904, 909MEF promoter, 2811MEF2, 2615MEF2A, 4843Megakaryocytic differentiation, 4395Megalin, 773Meiotic silencing by unpaired DNA, 5950MEK, 5100Mel-18, 5275Melanocortin-4 receptor, 285Melanoma, 153, 1940, 4219Melanoma cell, 2722Melittin, 5247Membrane fluidity, 4577Membrane lysis, 2301Membrane permeability, 3607Membrane potential, 3009Membrane protein, 222, 1529, 2863, 3147, 5765Membrane protein association, 1633Membrane protein complex, 797Membrane protein stability, 2546Membrane protein topology, 5643Membrane protein translocation, 5643Membrane traffic, 2842, 6169Membrane transport, 6031Mena, 455Menadione, 6511Menaquinone, 3493Meretrix meretrix Linnaeus, 1187Meristems, 4659Mesangial cell, 1249, 2576MeSH: DNA, 1702Mesoderm, 5024Messenger RNA synthesis, 904Met, 4550Metabolic network, 1867Metabolic pathway promiscuity, 6865Metabolic syndrome, 5163Metabolite profiling, 1332Metabolomics, 1332Metal binding domain, 1515Metal-binding proteins, 179Metal-binding site, 5287Metal center assembly, 4292Metal homeostasis, 783Metal ion, 1261, 4571, 5260Metal tolerance, 4165Metallo-chaperone, 1117, 2307Metallopeptidase, 5013Metalloprotease, 2507, 3317Metastable intermediate, 1183Metastasis, 2722Metazoan evolution, 3355Methanopyrus kandleri, 2807Methanosarcina, 3859Methanothermobacter marburgensis, 1741Methionine oxidation, 2913Methoxyflavone, 16653-Methylcholanthrene, 2292-C-Methyl-DD-erythritol 4-phosphate, 3802

Methyl ester, 5175Methyl jasmonate, 6791Methylation, 2519, 4088, 4302Methylation-specific PCR, 1587Methylglyoxal, 5596, 62651-Methyl-4-phenylpyridinium, 4781Methyltransferase, 1983Methyltransferase activity, 38594-Methylumbelliferone, 2722MetRS, 969MHC, 2355MHC class I, 4413Michael addition, 5803Microaerobic condition, 4567Microarray, 1213, 2137Microarray analysis, 1795, 6604Microarray database, 1795Microdomain, 1759Microglia, 1995b2-Microglobulin, 5425Microinjection, 2143Microplasmin, 1565microRNA, 318, 3849, 5822, 5830, 5904, 5911, 5923Microscopy, 1702Microtubule, 3481, 3515, 4781Microtubule binding, 2421Microtubule-binding domain, 3481Midblastula transition, 318Migration, 6721Milk protein, 2097Mimosa pudica, 4417Mimotope, 586Minimal multicellular system, 1779Miniserpin, 4813miRNA, 5822, 5830Misfolding, 823, 4113Mitochondria, 1109, 1930, 2161, 2327, 2485, 2913, 3136, 3695, 3707,

3814, 5407, 6079, 6191, 6423, 6511, 6781, 6895Mitochondria fusion/fission, 3169Mitochondrial ADP/ATP carrier, 6031Mitochondrial carrier, 633Mitochondrial coupling, 1978Mitochondrial disease, 2948Mitochondrial intermembrane space import and assembly 40, 179Mitochondrial matrix, 4892Mitochondrial protein import, 507Mitochondrial stress, 1324Mitochondrial targeting signal, 5527Mitochondrial tRNA, 2767, 2948, 6769Mitochondrion, 179, 337, 604, 633, 1072, 1639, 1670Mitogen, 6388Mitogen-activated protein kinase, 4973Mitogen-activated protein kinase activation, 281Mitogen activated protein kinase/extracellular signal regulated

kinase, 1891Mitosis, 2635Mitotic index, 4757Mitoubiquinone, 2669Mixed valence, 3014MJ0796 protein, 4193mKir2.1, 1723MKN-74 cell, 1911MMP-14, 3601MMP-7, 3601MMP-9, 5487Mobile catalytic site, 745Model, 1859Modeling software, 1789Modified nucleoside, 2767Modular proteins, 1808Modularity, 621Module, 1859Molecular adaptors, 3231Molecular biology, 1702Molecular chaperone, 3515, 3718Molecular crowding, 1783Molecular dynamics, 627, 2679, 2939, 5287, 5392, 5549, 6505, 6726Molecular dynamics simulation, 4193Molecular evolution, 1772Molecular imaging, 927


Molecular mimicry, 2261Molecular noise, 597Molecular shield, 4093Molecular structure, 1702Monoamine oxidase, 5260Monoclonal antibody, 493, 4226, 5379Monocyte chemoattractant protein-1, 1597Monolayers, 5074Monolignol, 2802Monomolecular films, 976Mononuclear, 2564Monooxygenase, 2215Mono-thiol glutaredoxin, 591Monte Carlo minimization, 4207Morphant, 4843Morphogenesis, 5181Morpholino, 4843Mortalin, 586Mossbauer, 3737Most recent common ancestor, 4928Motif conservation, 3342Motility, 3271, 6667Mouse, 3555Mouse embryo, 398Mouse hepatocyte, 5691Mouse polyomavirus, 6549mouse transformed lung Clara cell-derived cell line, 2221Mpr1p Pad1p N-terminal domain, 1693MRG19, 6809mRNA decay, 5069mRNA expression level, 5333mRNA localisation, 2226mRNA splicing, 671mRNA stability, 1061, 2609, 4402a-MSH, 285MT, 3481mtCC, 2221mtDNA, 1109mtDNA mutations, 6909mTOR, 4763MTSEA, 285Mucor rouxii, 2744MudPIT, 904Multicatalytic endopeptidase complex-like 1, 2781Multicellular tumor spheroid, 4541Multi-domain protein, 4367Multidrug resistance, 3984Multinucleated cells, 2387Multi-parametric sensitivity analysis, 1101Multiple myeloma, 6217Multipotent agents, 5260Multiprotein complex, 6049Multivariate analysis, 6499Murine double minute 2, 4978Murine macrophage-like cell, 6821Muscarinic receptor, 133Muscle FBPase, 5577Muscle fiber type, 11Muscle regeneration, 2236Muscular dystrophy, 2359Mushroom bodies, 5129Mushroom grifolin, 3437Mutagenesis, 868, 1124, 1383, 5414Mutant, 4803Mutant p53, 2323Mutation, 3503, 4707Mutational analysis, 1884Mutations, 4113Myc proto-oncogene, 398Mycobacteria, 6749Mycobacterium tuberculosis, 215Mycolic acids, 6749Myeloid Elf-1 like factor, 2811MyHCI, 749Myoclonus-dystonia, 4822Myofibrillar myopathies, 3777Myogenesis, 5651Myogenic differentiation, 2236Myogenin, 2236Myoglianin, 4615

Myopodin, 6673Myosin light chain kinase, 4361Myosin light chain phosphatase, 4271Myosin phosphatase, 6611Myosin target subunit, 6611MYPT1, 4271MZF-1, 604

N

Na channel, 6317Na+-ATPase, 5002Na+/H+ antiporter, 373, 4733Na,K-ATPase a1-subunit, 2773Na/K pump, 2773NAD biosynthesis, 3737NadA, 3737NadB, 3737NADH dehydrogenase subunit 5, 3449NADH-Q oxidoreductase, 4555NADH-quinone oxidoreductase, 3164NADH-ubiquinone oxidoreductase, 4861NADH:ubiquinone oxidoreductase, 500, 4892NADPH oxidase, 1301, 2533, 4541, 4879Nanoflow electrospray, 943Nanotechnology, 1702Naphthalene, 6247Na+-pump, 5002Nascent chain, 3207Natively unfolded protein, 3346Nbs1, 1350NcoA62, 2883ND6, 6909NDRG1, 991NDUFS4 gene, 3770Nearest neighbor, 3444Necdin, 3797Necrosis, 2364, 3287, 6128, 6465Nectins, 2243Nematode, 2767, 6037Neostatin-14, 3601Neostatin-7, 3601Neprilysin, 6027Nerve growth factor, 1172Net charge, 3574Network analysis, 1802Network biology, 1834Network evolution, 5718Network robustness, 3037Networks, 1828Neural stem cell, 3473Neurite outgrowth, 1015Neuritin, 4562Neuroblastoma, 6128Neuroblastoma (NG108-15) cell, 2051Neurodegeneration, 571, 4781Neurodegenerative disorders, 3287Neuroendocrine cell, 6575Neurofibrillary tangle, 3481Neuromuscular junction, 2469Neuronal apoptosis, 6147Neuronal cells, 6199Neuronal differentiation, 3789Neuronal nitric-oxide synthase, 5658Neurones, 6147Neuropathology, 4099, 6237Neuropoietic cytokine, 4317Neuroprotection, 6716Neurospora crassa, 2208, 4012Neurotoxicity, 2913Neurotoxin, 2643, 3881Neurotrophic factor, 2693Neutral sphingomyelinase, 5571Neutrophil elastase, 5305


Neutrophil serine protease, 5305Neutrophils, 6159Newly synthesized proteins, 6511NF-jB, 1995, 2369, 3744, 3953, 4081, 4797, 5193, 5430, 6814,

6839NF-kB, 141NFT, 3481NGAL, 773NG108-15 cells, 5658NhaA, 373NhaA inhibitor, 373NhaA-proteoliposomes, 373NhaB, 373NhaD, 373NHE2, 4733Nicotiana tabacum, 2480, 4479, 6074Nicotinamide nucleotides, 2863Nicotine metabolism, 2480Nicotinic acetylcholine receptor, 2643nif, 5751[NiFe]-hydrogenase, 469, 4287, 4292NIMA-related kinase, 4659Nitrate reductase, 3814Nitration, 2421, 2643, 5100Nitric oxide, 733, 2499, 2833, 3119, 3814, 4081, 4119, 4349, 5571,

6115, 6230, 6839Nitric oxide synthase, 3159, 4407Nitrile, 1394Nitrite reductase, 3814Nitrogenase, 5751Nitrosative stress, 1646S-nitrosocysteine, 4119S-Nitrosothiol, 2499, 4119S-Nitrosylation, 6115Nitrotyrosine, 2643N-linked glycosylation, 5643NMDAR1, 6587Nmi, 3941NMR, 18, 3920, 5293, 5663NMR exchange spectroscopy, 4159NMR solution structure, 5669NNRTI, 379NO catabolism, 2528NO donors, 6115NO inhibition, 2528N2O reductase activity, 4605Nod1, 4513Node degree sequence, 5140NOE, 3481NOESY, 3481Non-covalent complex, 271Non-equilibrium capillary electrophoresis of equilibrium

mixture, 1371Non-genomic effect, 2995Non-insulin-dependent diabetes mellitus, 1143Non-natural amino acid, 6769Non-obese diabetic mouse, 3975Non-peptide antagonist, 349Non-photochemical quenching, 275, 4201Nonsense mediated decay, 3770Non-small cell lung cancer, 2873Non-specific lipid transfer protein-1, 1683Non-viral gene therapy, 1291Norepinephrine, 5680Normal aging, 6027Notch, 1220, 5798Nox-1, 4541NOX1, 1301Nox4, 2533Nrf2 signaling, 3029NRK-52E cells, 6251Nrl, 3547NSCLC, 4635N-terminal-specific protein modification, 2092N-type, 3907Nuclear architecture, 325Nuclear b-catenin, 2965Nuclear delivery, 2143Nuclear envelope, 6326Nuclear export, 4978, 5473, 6272

Nuclear factor jB, 3069Nuclear factor for IL-6, 705Nuclear factor kappa B, 4923Nuclear factor-jB, 4213, 6451, 6821Nuclear localization, 4949Nuclear localization sequence, 6673Nuclear localization signal, 4978Nuclear magnetic resonance, 1917, 4049, 5542, 6095Nuclear magnetic resonance structure, 2788, 3534Nuclear matrix, 6326Nuclear receptor, 3560, 6733Nuclear translocation, 6733Nucleic acid intercalator, 79Nucleocapsid protein, 2387, 2404, 2623Nucleolus, 5553, 5626Nucleophosmin, 6621Nucleoside analogue, 6616Nucleoside diphosphate kinase, 6595Nucleosome, 895, 899, 170250-Nucleotidase, 3363Nucleotide binding domain, 3979, 4193Nucleotide sequencing, 976Nucleotides, 4044Nucleus, 2597, 6673NuoF, 3164NuRD complex, 3731

O

O2 evolution, 4017Obesity, 1458, 3487, 6417Obstructor, 6827Octapeptide repeats, 6237Odor transduction, 1675Oestrogen, 541, 2541Oestrogen receptor, 541Oil palm, 2709Oleic acid, 6095Olfactomedin, 5443Olfactory cilia, 1675Oligomerization, 441, 2387, 2421, 3574, 5663, 6055, 6903Oligomers, 3141Oligonucleotide arrays, 4503Oligopeptidase, 2191Oligosaccharyltransferase, 6564Omic, 1878Oncogenes, 6079Oncogenesis, 3231Oncogenomics, 1884Onconase, 265Oncostatin M, 4317Ontology, 1815, 4685Oocyte, 3019OPR/PC/AID motif, 3534Optic atrophy, 1109Optical biosensor, 4175, 6365Oral immunization, 6737Oral sensitization, 4485ORF6, 6763ORFans, 3175ORFeome, 1834Origin recognition complex, 877Ornithine decarboxylase, 2919Ornithine decarboxylase antizyme 3, 559Orofacial, 3539Orthogonal tRNA, 6769Ortholog, 2021Osmotic sensitivity, 1551Osmotic stress, 207, 3872Osteoblast, 832, 5338Osteoclast, 832, 4937Osteosarcoma, 615Otx2, 2926Otx3/Dmbx1, 2926


Ovariectomy, 449Ovary, 2376Overexpression, 3589, 6265Overproduction inhibition, 6205Ovulation, 549b-Oxidation, 6814Oxidation-sensitive probes, 1255Oxidative damage, 6909Oxidative deamination, 5175Oxidative inhibition, 4719Oxidative phosphorylation, 523Oxidative stress, 677, 1255, 1646, 3411, 3691, 4044, 4099, 4265, 4402,

4571, 5494, 5596, 5691, 6295, 6388, 6511, 6814, 6895Oxidized LDL, 4503Oxidized low density lipoprotein, 6537Oxidoreductase, 23192-Oxoacid, 2319a-Oxoaldehydes, 55962-Oxoglutarate, 5170Oxygen, 963, 4012Oxygen affinity, 4567Oxygen evolution, 3081Oxygenase, 5170, 5582Oxytocin receptor, 349Ozone, 6444

P

p15INK4b, 6705p16, 2105p21, 1940, 5798p24, 3707p27, 3932p27Kip1, 1027p27Kip1, 5535, 6529p38, 2045p38 MAPK, 3683, 4402, 5084P450, 6247p51, 2294p53, 1001, 1477, 1587, 1940, 2231, 2604, 2752, 3683, 3965, 4978,

5007, 5473, 5609, 6079, 6705p53 or MDM2 promoter, 2323p53-R175H mutant, 5609p62, 5029p65, 4797p66, 2294P680, 712P700, 2273p73, 4610P2X7, 5407P2X7 receptor, 2675, 3783P2Y receptor, 2469PAF, 4038paired helical filament, 1399, 3481p-Akt, 6716PalA, 1745Palindromic repetitive element, 5281Pancreatic acinar cells, 6355Pancreatic islets, 5241PAR4, 25Parameter perturbations, 4520Paraoxonase, 3713Parathyroid hormone type 1, 803Parkin, 3913Parkinson�s disease, 1197, 2485, 4005, 4781PARP, 615, 5559PAT-3, 549Patch-clamp, 3695Pathogen, 728Pathogen-associated molecular patterns, 6519Pathogen recognition receptors, 6519Pathogenesis, 1338, 3449Pathogenicity, 2077Pathway, 1821, 1846

Pathway data integration, 1815Pathway database, 1815Pathway evolution, 1839Patient tissue, 2948Paulus pressure dialysis cell, 2250Paxillin, 5651PAZ, 5841p-B cell lymphoma protein-2, 6716P1B-type ATPase, 1515PC1, 5621PC7, 5621Pcb proteins, 1306p53 cell cycle and apoptosis control network, 3037PcG, 115PCNA, 873PD-1, 6259PD184352, 236PD98059, 236PDIP1, 1715PDR, 6791PdtaR, 4145PDZ domain, 483, 2243, 3725PDZ-binding motif, 4822PECAM-1, 1272Pelle, 3920Penicillin amidase, 5069Pentose phosphate pathway, 185PEPCK, 4076Pepstatin-insensitive, 2991Peptidase, 2191Peptide, 1597Peptide-binding, 1161Peptide-loading complex, 4413Peptide:N-glycanase, 823Peptide pro-drug, 2439Peptide synthesis, 162Peptide transport, 4413Peptidylarginine deiminase, 4088Peptidylglycine a-amidating monooxygenase, 4678Peptidylprolyl cis–trans isomerase, 1469, 4159Peptidyl transferase mechanism, 955Perception of sound, 3369Perchloric acid-soluble protein (PSP), 2416Perforant path, 1055Pericyte, 2569Pericyte loss, 4265Periodontitis, 5559Peripheral blood lymphocyte, 2759Peripheral blood mononuclear cell, 2731Peripheral stalk, 4374Perlecan, 4792, 5019Permeability, 4031, 4851, 4966Permeability transition, 3009Permeability transition pore, 3695, 5105Peroxidase-like activity, 3960Peroxide, 2327Peroxiredoxin, 2327Peroxiredoxin-I, 2873Peroxiredoxin II, 4897Peroxisome, 409, 3416Peroxisome proliferator activated receptor gamma, 1765Peroxygenase, 6247Peroxynitrite, 2421, 3119, 4719Peutz Jeghers syndrome, 1417Pex14p, 3416Pex5p, 3416Pfr, 3970PGC-1a, 1446PGI2, 3829P-glycoprotein, 3381, 4541pH, 2648pH response, 1745Phage display, 3508, 5746, 6089Phage-displayed peptide library, 541Phagocytosis, 3297Phalloidin, 655PHAP, 363Pharmacophore, 4685Phaseolus vulgaris, 5616Phenobarbital, 6733


Phenobarbital-responsive enhancer module, 3560Phenotype/genotype relations, 4642Phenotypic analysis, 1723Phenylpropanoid metabolism, 4622Pheochromocytoma cells, 4005PHF, 3481PHI-1, 4271Phoslactomycin, 2463Phosphagen kinase, 1688Phosphatase, 2463Phosphatases, 3855Phosphate starvation, 5729Phosphatidylcholine, 5074Phosphatidylethanolamine, 5074Phosphatidylinositol, 2868Phosphatidylinositol 3-kinase, 59, 1243, 6451Phosphatidylinositol 5-phosphate, 2868Phosphatidylinositol phosphate kinase, 3427Phosphatidylinositol(3)phosphate, 1243Phosphatidylserine, 6128, 6191Phosphodiesterase, 832Phosphoenolpyruvate carboxykinase, 1509, 27956-Phosphofructo-2-kinase/fructose-2,6-bisphosphatase, 357Phosphofructokinase, 2313, 6151Phosphoinositide, 3433-Phosphoinositide dependent protein kinase-1, 3632Phosphoinositide 3 kinase, 1301Phospholipase A2, 4923Phospholipase C, 1551, 4949Phospholipase D, 5635Phospholipid, 4713Phospholipid bilayer, 1143, 4577Phospholipid membrane, 5247Phospholipid synthesis, 2161Phospho-p44/42 mitogen-activated protein kinase, 6716Phosphoryl transfer, 4145Phosphorylation, 1, 59, 122, 464, 577, 621, 1424, 1453, 1469, 1534,

2485, 2604, 2986, 3001, 4417, 5473, 5658Phosphotransferase, 3363Photoactivation, 325Photoacustic calorimetry, 3014Photoaffinity labeling, 1961Photocrosslinking, 5454Photocycle, 3147Photodynamic therapy, 5361Photodynamic treatment, 185, 1255Photolysis, 4567Photooxidative stress, 2289Photoperiodism, 1067Photoprotection, 275, 2289, 4201Photosensory receptor, 3147Photosynthesis, 1306, 2125, 2273, 3081, 3493, 3565, 4787, 4991Photosynthetic pigments, 2289Photosystem, 963Photosystem I, 2273, 3253, 3493, 3619, 4808Photosystem II, 712, 1306, 3081, 3190, 4017Phox and Bem1 family, 3534PhtA, 5353PhtB, 5353PhtD, 5353PhtE, 5353Phycobilisome, 3569, 4571Phylogenetic analysis, 5443Phylogeny, 3355, 4928Physicochemical property, 3444Phytochrome, 1613, 3970Phytoene desaturase, 2125Phytoestrogen, 1732, 2541Phytohormone, 3239Pi binding, 2250Pi binding residue, 523PI3K, 191, 529, 4149PI3Kc, 133PI3-K p110a mutation, 5123PI3-kinase, 3744Pichia pastoris, 4647Picornavirus, 5507PICOT-HD, 591Pili, 4923Pilot clinical study, 5535

Pin1, 4159Pine, 2657PI(4,5)P2, 343Pipistrellus kuhli, 2519PIST, 6305PITSLRE, 3579Pituitary adenylate cyclase polypeptide, 4005Pituitary transforming gene, 3195PIWI, 5841PKA, 4049, 5635PKB, 991PKB/AKT, 5123PKC, 66PKCa, 4635pKa calculation, 5392PKC phosphorylation, 115PLA2, 4692Placenta, 398Placental growth factor, 1227Planar lipid bilayers, 5187Plant, 1072, 1930, 4374, 5521, 5858Plant defence, 6647Plant defense, 4879Plant defensin, 1973Plant mitochondria, 4437Plant parasitic nematode, 2451Plant respiration, 331Plant RNA viruses, 4955Plant toxin, 2301Plant–pathogen interaction, 3814Plasma membrane, 3043, 5002, 5501Plasma membrane Ca2+-ATPase, 2397Plasma membrane intrinsic protein, 4417Plasma membrane potential, 512Plasma membrane proton ATPase, 4044Plasmid DNA, 2143Plasminogen, 1565, 6023Plasminogen activation, 1565Plasminogen activator, 3303Plasminogen activator inhibitor-1, 3555Plasmodium falciparum, 655, 6151Plastid, 1930, 3707Plastochromanol-8, 1357Plastocyanin, 3565Platelet, 2759, 4550Platelet-activating factor, 2369, 6451Platelet aggregation, 4119Platelet-derived growth factor, 4395Platelet-derived growth factor receptor, 3899Pleckstrin homology domain, 4383Plectin, 3777PMR1, 2021Pneumococcal histidine triad protein, 5353POF, 2702Pokeweeds, 2445Pol II, 5974Pol III, 5974Pol IV, 5879Polarized epithelia, 483Poly(ADP-ribose) polymerase-1, 1389Poly(ADP-ribose) polymerase-2, 1389Polyamine synthesis, 6037Polyamines, 1435, 1557, 5347, 6191Polyarginine, 927, 3965Polycistronic vectors, 6803Polycomb group gene, 5275Polycyclic aromatic hydrocarbon, 229, 1904, 6338Poly(ethylenimine), 6191Polylactosamine, 71Poly(LL-lysine), 6191Polymorphism, 2589, 2675Polyneddylation, 4867Polyol osmolytes, 3891Polyphosphate, 5187Polyploidy, 4055Polytomella, 5769Polyubiquitination, 4867Poly-unsaturated fatty acid, 2744PON enzymes, 3713Populus alba, 2514


Porin, 2546Position weight matrices, 5603Post-synapse, 6834Post-transcriptional modification, 2948, 6745Post-transcriptional regulation, 5069Post-transcriptional RNA modification, 2807Post-translational modification, 203, 2014, 2092, 5803Potassium channel, 1625, 4113Potassium efflux, 4733Potassium transport, 512Potato, 6737Potential ligand-binding cavity, 1988Potyvirus, 1167Power law, 5140PP2A, 3392PPARc, 41PPAR-d, 3829Pph3, 3278PPIase, 5781Preadipocyte cell line, 5631Prediction, 4302, 5904Prefoldin, 3718Premutation, 2702Pressure overload, 2615Primary cilia, 819Primary sequence determination, 1917Primer extension, 4629Primer-template junction, 863Principal component analysis, 6499Prion, 638, 2589, 2715, 4099, 5419, 6237PRMT5, 683proB, 6903Processing, 1285, 2334Processive degradation, 6846Prochlorococcus, 275Progesterone, 4692Progesterone receptor, 5535Programmed cell death, 4943Progressive myoclonus epilepsy, 2149Prolidase, 6140Proliferating cell nuclear antigen, 4591Proliferation, 398, 1940, 2773, 4757Proliferative diabetic retinopathy, 1227Proliferative vitreoretinopathy, 4020Proline biosynthesis, 6903Prolyl hydroxylase, 5170Prolyl-tRNA synthetase, 6017Promoter, 105, 357, 1488, 2097r54-Promoter, 813Propeptide, 1172, 4430Proprotein convertase, 4813, 5621ProRS, 6017Prosegment, 5621Prostaglandin, 5803Prostaglandin E2, 2551, 3975Prostaglandin F2a, 1301Prostate cancer, 1945Protamine, 2143Protease, 2334, 4309, 4430Protease inhibitor, 4430, 4813Proteasomal activity, 3913Proteasomal degradation, 5473Proteasome, 3214, 3224, 3613, 4797, 4879, 6223Proteasome inhibition, 1Proteasome subunit a4, 3913Protein acetylation, 6428Protein adducts, 5596Protein aggregation, 1197, 3433, 5029Protein association, 6781Protein-based immune system, 2267Protein biosynthesis, 6049Protein C, 3310Protein complex, 1854Protein database, 3048Protein degradation, 3126Protein dimerization, 2663Protein disorder in vivo, 3346Protein–DNA interaction, 1371, 5669Protein engineering, 2058, 2082Protein evolution, 3342

Protein expression, 2491Protein folding, 271, 916, 2254, 5223Protein function prediction, 591Protein glycosylation, 6564Protein import, 179, 1343, 3416Protein interacting with C-kinase-1, 2243Protein interaction, 1828, 3246, 5419Protein interaction network, 1854Protein kinase, 2111, 2604Protein kinase A, 4049Protein kinase B, 3024, 3744Protein kinase C, 1227Protein kinase CK2, 1424Protein kinase PKR, 3055Protein kinase Snf1, 512Protein kinase specificity, 991Protein knockout, 3037Protein–ligand complexes, 6659Protein–ligand interaction, 3342Protein localization signal, 483Protein misfolding, 638Protein modeling, 2451Protein modification, 6210Protein network, 1821Protein oxidation, 3613Protein phosphatase, 5658Protein phosphatase 4, 3278Protein phosphatase 5, 4513Protein phosphatase-1, 5626Protein phosphatase-2A, 251Protein phosphatase-2A inhibitor, 363Protein phosphorylation, 4049, 4808Protein processing, 5685Protein–protein interaction, 1839, 3392Protein–protein interaction networks, 5140Protein S, 3310, 6023Protein secondary structure, 3397Protein secretion, 1267Protein serine/threonine phosphatase 2A, 2463Protein stability, 3891, 4297, 4367Protein structure, 5542Protein structure prediction, 3397Protein subcellular location, 3444Protein synthesis, 4492, 6423, 6803Protein synthesis inhibition, 79, 1324Protein transport, 5385Protein tyrosine phosphatase, 3024Protein ubiquitination, 1015Proteinase 3, 5305Proteoglycan, 5019Proteolysis, 1, 2058, 3214, 3932, 4797, 5791Proteolytic processing, 1149Proteomic, 683Proteomics, 885, 933, 6350Proton pump, 3625Proton pumping, 2026, 6361Proton-pumping mechanism, 4555Proton translocation, 2863Protonmotive force, 5114Protooncogen, 2475Prozac, 5105PrP, 6237PrPC, 5419PsaF/J, 3253PsaL, 3253PsbV, 3190Pseudoknot, 127Pseudomonas, 4707Pseudomonas aeruginosa, 3713Pseudomonas fragi, 2383Pseudomonas syringae, 1493PSMA7, 3913Psychophysiological stress, 2137Psychotrophic bacterium, 5781PTB binding protein, 4254Pteris semipinnata L., 1477PTEN, 2376PTGS, 5974PTK, 5487PTTG, 3195


P-type ATPase, 783P1-type ATPase, 1117PUA domain, 6903PucM, 4769Pulmonary endothelium, 4031Punctuated equilibrium, 2254Purification, 1529, 3141, 3589Purine nucleotide, 3363Purkinje neuron, 2715Putrescine aminotransferase, 4107Putrescine degradation, 4107Pyrethroid-resistant mutations, 6317Pyridoxal 50-phosphate, 2458, 5175Pyridoxal 50-phosphate-dependent enzyme, 2197Pyrobaculum aerophilum, 477Pyrococcus furiosus, 4729, 6140Pyruvate, 331

Q

QM/MM study, 4249Qualitative model, 1867Quality control, 2277Quality control system, 5227Quantitative RT-PCR, 2137Quantum yield of photosynthesis, 4017Quaternary structure, 1067Quelling, 5950Quercetin, 677, 5343Quinolinate synthetase, 3737Quinone, 677Quorum sensing, 2077, 3713

R

Rab4a, 2821Rabbit, 4333Rad9, 157Radial spoke, 661Radical-SAM, 5055Radicicol, 6350Radiofrequency, 4829Raf, 3271Rafts, 6343Ralstonia eutropha, 4292Raman, 6361Rana catesbeiana ribonuclease, 265Random mutagenesis, 4701Random sequence, 5333Rank–degree plot, 5140Rapamycin, 2433, 3207, 3278Rapid kinetics, 938Ras, 90, 455, 648, 5635, 6479Ras inhibitor, 6851ras transformation, 1047Rat, 5343Rat skeletal myotubes, 2051RAW264.7 cells, 4423Rb protein, 615RB18A/TRAP220/DRIP205, 2323RBP-J, 1220Rbx2, 6796RCC1-like domain, 343rDJL, 5734Reaction centre, 963Reaction-diffusion, 1789Reaction intermediate, 1394, 4389

Reaction mechanism, 6647Reactive Cys, 4125Reactive nitrogen species, 3029Reactive oxygen intermediate, 415Reactive oxygen species, 185, 717, 723, 1243, 2533, 2669, 2833, 3029,

3131, 3136, 3411, 3651, 4012, 4541, 4724, 4897, 5260, 5521, 6809Reactive oxygen species and RNA-mediated interference, 778Reactive synaptogenesis, 1055Receptor, 803, 1343, 3855, 5507Receptor Ah, 1904Receptor binding, 3508Receptor clustering, 6587Receptor dimerization, 2973Receptor for AGEs, 4265Receptor heterogeneity, 3043Receptor internalization, 4985Receptor phosphorylation, 4985Receptor site, 3881Receptor trafficking, 5227Receptor tyrosine kinase, 122Recognition of GlyRS with tRNAGly, 1441Recombinant allergen, 1988Recombinant human aA-crystallin, 2897Reconstitution, 5187Red blood cells, 4119Red light, 1613Redox, 4729Redox control, 963, 1765, 3625Redox potential, 712, 2273Redox regulation, 3363Reduction potential, 2215Reductive activation, 2191Reductive alkylation, 4813Refinement, 5542RefSeq, 690Regeneration, 749Regulation, 331, 2077, 2953, 5114, 5325, 5713, 6875Regulatory element, 2097Regulatory network, 4666Regulatory subunit, 2679Release factor 1, 2156Renin–angiotensin system, 4997Replica-exchange molecular dynamics, 5425Reporter enzyme, 2082Reporter protein, 1008Residual dipolar couplings, 5542Residual structure, 3346Resistance, 3421, 4479Resistin, 449Resonance energy transfer, 2973Resonance Raman spectroscopy, 1394, 3147Resonant waveguide grating biosensor, 4175, 6365Respiration, 2528, 3565Respiratory chain, 4567, 5152Respiratory chain complexes, 4724Respiratory complex I, 3770Respiratory tract, 4911REST, 6199Resveratrol, 3131Retention time index, 1332Retinal dystrophy, 5414Retinal pigment epithelial cells, 4020Retinoblastoma, 398Retinoblastoma protein, 4591Retrotransposon, 3867Reverse transcriptase, 1435Reverse transcriptase dimerization, 379Reverse transcription PCR, 1587Reverse two-hybrid system, 1834Rewiring pathways, 1808RFX-1, 6439Rheb, 4763RhebL1, 4763Rhinovirus, 5507Rhizopus oryzae lipase, 976Rho, 648, 1039, 5181Rho family proteins, 4038Rho GTPase-activating protein, 1191Rho kinase, 6611, 6721RhoA, 1015, 2469, 5589, 6121, 6169


RhoA small GTPase, 1272Rhodanese, 6786Rhodnius prolixus, 6010Rhodococcus, 2215Rhomboid, 5723RhtB family, 4629Rib72, 819Riboflavin, 5361Ribonuclease, 6859Ribonuclease A, 2663, 3891Ribonuclease cytotoxicity, 2663Ribonuclease inhibitor, 2663Ribosomal catalysis, 948Ribosomal protein, 855, 6846Ribosome, 855, 916, 943, 959, 3207, 3214, 5439, 5517, 6423, 6859Ribosome evolution, 948Ribosome inactivating protein, 1324Ribosome inactivation, 1324Ribosome-recycling factor, 948Ribosome structure, 955Riboswitch, 2583Ribotoxic stress response, 1324Ribotoxin, 6859Ribozyme, 554, 955Rieske ferredoxin, 1020Rim20, 1745RING finger, 115, 5007RISC assembly, 5850RITS, 5872RLIP76, 4635RNA, 5035RNA amplification, 1213RNA-binding protein, 2226, 4887RNA-dependent RNA polymerase, 5879RNA editing, 5940RNA-induced silencing complex, 5822, 5899RNA interference, 173, 199, 2267, 2404, 2878, 3100, 3115, 4226,

4479, 4919, 5241, 5822, 5899, 5988, 5996RNA polymerase II, 48, 683, 899, 904, 909RNA silencing, 2267, 5950, 5958, 5965, 6210RNA structural switch, 2583RNA structure, 955RNAi, 3063, 4966, 5872, 5932, 5940, 5965, 5982, 6074RNase, 5069RNase depletion, 5069RNaseIII, 5841Robustness analysis, 1101Rodent�s genome, 2901b-Roll, 4707Root hairs, 5399Root tip, 827ROS, 6909ROS1, 5889Rotenone, 4005RPA, 157Rpb7, 48RPEL, 100RPPGF, 25RPTP, 3855R-SNARE, 2842Rubisco, 1183Rusticyanin, 5223Rv3220c, 4145Ryanodine receptors, 3159

S

S13, 855S9, 855SA3443, 6084Saccharomyces, 2021Saccharomyces cerevisiae, 1723, 1973, 2277, 2847, 3589, 4044, 4733,

5217, 5697, 6564SAD, 5353

Safety, 5996Safrole oxide, 5809SAGE, 4829Salt tolerance, 5002, 6265Saponin, 4175a-Sarcin, 6859e-Sarcoglycan, 4822e-Sarcoglycan gene, 4822SARS, 5663SARS 6 protein, 6763SARS coronavirus, 2623, 6089SARS-CoV, 2387, 4928, 6763Satellite DNA, 2519Satiety, 2439Saturation transfer difference NMR, 661SBDD, 1389Scale-free network, 5718Scallop, 2727Scatchard plot, 3043Scavenger receptor class B type I, 4713SCF, 6653Schistosoma mansoni, 6010Schizosaccharomyces pombe, 48, 2737, 4873SCLC, 4635Z-score, 5333Scoring function, 6659Scorpion toxin, 3881Scrapie, 6237Scribble, 5061Scytalidopepsin, 2991SDF-1a, 5293SecA, 1267Secondary metabolism, 2480Secondary structure, 5035Secretase, 2119c-Secretase, 2907Secretory granule, 222, 2597, 5145Secretory phospholipase A2, 2693Securin, 3195Sedolisin, 1383Seed, 2185Seed development, 1557Seed maturation, 4666Selective inhibition, 4344Selectivity, 763, 5247Selenium, 667, 792Selenocysteine, 667Selenoprotein, 792SELEX, 4535Sema4C, 2236Semantic similarity, 4685Semaphorin, 2236, 3821Semiquinone-gating, 4555Senescence, 5798, 6388SENP1, 6272Sensitivity, 5265Sensory neuron, 2166Sepiapterin reductase, 3085Sepsis, 699Septation, 5181Sequestosome, 5029Sera of healthy rats, 3960SERCA2a, 749Serinamide, 4344Serine dehydratase, 2009Serine protease, 5723Serine-carboxyl peptidase, 1383Serine:pyruvate transaminase, 2009Serine/threonine protein phosphatase, 1591Serotonin, 1136, 2973Serpin, 4813Serum/glucocorticoid-induced kinase, 1534Serum response element, 648Seryl-tRNA synthetase, 4344SET domain, 3859Severe acute respiratory syndrome, 4928, 6763Severe acute respiratory syndrome coronavirus, 2130, 2404, 6699SGK, 991SH group, 2313SHARP-2/Stra13/DEC1, 1509


SH2-containing phosphatase, 3669SH3 domain binding glutamic acid-rich protein like 3, 2788Shigella, 813Shoot apex, 2709Shoot development, 4622Short hairpin RNA, 3100Short interfering RNA, 3115shRNA, 5982Sialidase, 1034Side population, 6569Siderophore, 773Signal internalization, 6375Signal pathway, 6295Signal sequence, 5643Signal transduction, 281, 648, 1579, 1732, 1808, 2557, 2919, 3231,

3369, 3970, 5746, 6044Signaling pathway, 1783Signaling state, 4329Signalling, 3239, 3789, 5040, 5487, 6365Signalling cascade, 5461Signalling networks, 1891Signalling pathway, 3297Silencing, 4278Silica gel, 2197Silica nanostructures, 3765Simulation, 1783Simulation algorithm, 1789Sinapyl aldehyde, 2802Single chain Fv fragment, 5609Single DNA observation, 3095Single mitochondrion, 3009Single-strand overhang, 2959Single-stranded poly(A), 5035siRNA, 173, 3376, 4937, 5830, 5974siRNA unwinding, 5850Site-directed mutagenesis, 2208, 2657, 2830Site-specific mutagenesis, 2445Site-specific protein conjugation, 2092S6K1, 4763Skeletal muscle, 1034, 1639, 1646, 4719Ski, 3701Skin, 207Skip, 2883SKN1, 1973SLC39A14, 427Slicer, 5822Sliding, 895S-like ribonuclease, 5729Smad, 2576, 2853, 3539, 3701, 4615Smad4, 4031Small and basic intrinsic protein, 5814Small angle neutron scattering, 1465Small-angle X-ray scattering, 1067Small G protein, 1136Small glutamine-rich TPR-containing protein, 1279Small heat shock protein, 1235, 5419Small interfering RNA, 2404, 2878, 4757, 5830, 5858, 5923, 5988Small molecule, 4685Small molecule chaperones, 4775Small nuclear ribonucleoprotein, 2348Small RNA, 318Small ubiquitin-like modifier, 5007, 6272Small ubiquitin-like modifier 1, 3001Smooth muscle cells, 4349, 6493Smoothened, 1529Smurf1, 1015Smurf2, 2557Snf1, 5318SnoN, 3701SNX9, 5040SOCS box, 6796SOD, 6809Sodium, 5407Sodium absorption, 6439Sodium channel, 2166, 3881Sodium current, 2166Sodium-dependent glucose transporter 1, 1653Sodium nitroprusside, 6230Software, 3048Soldier differentiation, 1365

Soluble guanylyl cyclase, 4349Soluble N-ethylmaleimide-sensitive factor attachment protein-

25, 222Soluble NSF attachment protein receptor, 6169Somatostatin subtype 5 receptor, 6305Sortilin, 1172SoxAX, 2491Sp1, 1001, 1715, 2811Spatial modeling, 1789Species differences, 5305Specificity, 5265Speract, 6667Spermatogenesis, 167, 3401, 5734Spermidine/spermine N-acetyltransferase, 5347Spermine, 3095, 5119Spheroid culture, 5338Sphingolipid, 1973, 2445, 3381Sphingomyelinase, 393, 1759, 3744Sphingosine 1-phosphate, 2576Sphingosine kinase, 1249, 5313Sphingosine-1-phosphate, 1249, 3899, 5313Spike protein, 2130, 6699Spin labelling, 4577Spinach, 1343Spinal cord, 2416Spinal muscular atrophy, 2348Spindle checkpoint and mitosis, 3385Spitz, 572350 Splice site, 2675Splice variant, 259Splicing, 241, 4856Splicing enhancer, 4138Splicing mutations, 1900S. pombe mitochondria, 331Spontaneous immortalization, 6705Sporulation, 2737Spred, 1161Sprouting, 5338Sprouty, 1161Src, 122, 577, 3019, 3497, 5635src homology 3 domain, 2339SRF, 6121SR-proteins, 413816S rRNA, 855ssDNA-binding protein, 1371Stability, 1503Stability of insulin, 3927Stains, 6601Standard exchange format, 1815Staphylococcal enterotoxin, 4407Staphylococcus aureus, 3421Staphylococcus epidermidis, 1917Staphylokinase, 1565StAR, 4337Starch sheath, 827STAT1, 3941, 5487STAT6, 173, 3953, 6653State transitions, 4808Staufen, 2226staurosporine, 6726Steady state response, 597Steatosis, 6895Stem cell, 1795, 6569Stem–loop, 5281Stem–loop model, 241Steroidogensis, 4337Sterols, 5129STI571, 4395Stilbene derivative, 517Stochastic simulation, 1789Stoichiometry, 6017Stomach, 1911Stopped-flow spectrophotometry, 1394Stopped-flow spectroscopy, 271Store operated Ca2+ influx, 1539Stratified epithelium, 2001Stratum corneum, 6870Streptokinase, 1565Streptomyces coelicolor, 3625Streptomyces lividans, 797


Streptozotocin, 1249, 3555Stress, 3651Stress protein, 2289String kernel, 2878Stroke, 3287, 4591Stroma, 827Structural basis, 1968Structural biology, 933Structural classification of proteins, 5669Structural conservation, 3503Structural genomics, 5669Structural stability, 1261Structure, 18, 868, 6031Structure–activity relationship, 3907Structure-based drug design, 6659Structure of denatured insulin, 3927Structure prediction, 3175Subcellular localization, 100, 2514, 3707, 3759Subsite-structure, 5013Substance P, 5135Substrate, 2458Substrate analogue, 4344Substrate binding site, 5781Substrate/ligand complex, 302Substrate specificity, 2514Substrate stimulated ATPase activity, 5765Subthreshold current, 2166Subtilisin, 4430Subunit, 983Subunit e, 5114Subunit c, 2981Subunit c00, 2981Subunit interaction, 2313Succinate, 5170Succinic semialdehyde dehydrogenase, 415Sucrose, 1405SUF system, 1129SufA, 6543SufD, 1129Suicide gene, 1376Sulfane sulfur transfer, 6786Sulfate ABC transporter, 2953Sulfated glycan, 2355Sulfite, 6486Sulfite reductase, 4600Sulfite reduction, 4803Sulfolobus solfataricus, 6865Sulfonation, 3639Sulfonylurea receptor, 1602Sulfur donor, 5055Sulfur transfer, 5236SULT2B1 promoter, 3639SUMO, 3369Sumoylation, 2387, 3369Sup35, 1503Superoxide, 4349Superoxide dismutase, 1187, 5521Superoxide reductase, 5521Support vector machine, 2878, 4302Suppression, 2156, 3674Surface plasmon resonance, 162, 2623, 5746Surface reporter, 813Surfactant protein D, 4449Survival, 3271, 6814Survival of motor neurons, 2348, 3278Susceptibility, 1167Symmetric transcription, 4746Synapse, 2177, 3821Synaptic transmission, 6587Synaptonemal complex, 167Synaptotagmin I, 222Syncytia formation and disease prevention, 2130Syncytin, 3991Syncytiotrophoblast, 3991Synechocystis, 2289, 4571Synergism, 1688Synergistic effect, 983Synonymous codon usage, 5205, 6499Syntaxin, 1602, 4226Syntaxin 1A, 222

Synthetic biology, 1808Synthetic lethality screen, 199Synthetic peptide, 2130Syringomycin E, 1973, 5675System, 1821System ASC, 2499Systemic RNA silencing, 5858Systems biology, 1101, 1779, 1783, 1834, 1854, 1867, 1872, 1878,

1891, 4642, 5325, 5718, 6289

T

T187A, 3932TAB1, 6641Tailored therapies, 1884TAK1, 6641Tamoxifen, 4278Tangeretin, 1665Target, 5904Target of Myb1, 5385Targeting, 5626Targeting specificity, 1072T-armless tRNA, 2767TAT, 3965TATA-less promoter, 5785Tau, 241, 1399, 1453, 2119, 2421, 5704, 6230, 6411Tau hyperphosphorylation, 251Tau protein, 1, 1371, 3481, 4159Tauopathy, 1399Taurine, 2948, 3069Taurocyamine kinase, 6756Taxol, 3090T-box, 5024T cell, 6641cd T cell, 3802T-cell, 1539T-cell factor-4, 2965T-cell receptor, 1539, 3336TCR, 141TCRcd-T cell, 4485Telomerase, 127, 859, 1411, 2959Telomerase activity, 1027Telomere, 127, 859, 2959TEM, 2569Temperature sensitive, 4113Template activating factor, 363Template-based protein structure prediction, 1203Tendon, 6101Tendon xanthomas, 4503Tenotomy, 749Termination, 2156Tertiary structure, 1988Testis, 3572,3,7,8-Tetrachlorodibenzo-p-dioxin, 167Tetracysteine, 927Tetrahydrobiopterin, 3085Tetrapolyphosphate, 6223TFA, 3481TFE, 3481TGFb, 3539TGFb1, 4031TGF-b, 2557, 2853, 3701TGF-b1, 3651TGS, 5974Th1, 4911Th2, 4911Thalassiosira pseudonana, 3765T-helper 1, 3975Therapeutic agent, 2058Therapy, 753Thermal denaturation, 5199Thermal denaturation of insulin, 3927Thermal inactivation, 2040, 2897Thermoadaptation, 477


Thermogenesis, 1978, 5680Thermolysin, 5013Thermophile, 1020, 2319Thermostability, 2383, 2897Thermostable enzyme, 6505Thermostable lipase, 3461Thermus thermophilus, 943Thialysine, 5347Thialysine Ne-acetyltransferases, 5347Thiamin, 5596Thiamine pyrophosphate, 2583Thiazolidinedione, 17654-Thio-deoxyuridylate, 1411thioflavin S, 3481Thiol activation, 745Thionin, 2301Thioredoxin, 4055Thioredoxin peroxidase, 2327Thioredoxin reductase, 337, 74540-Thioribonucleoside, 311540-ThioRNA, 3115Thiosulfate oxidation, 2491Thiosulfate reduction, 4803Thiosulfate:cyanide sulfurtransferase, 67812-Thiouridine, 2767Three-body correlations, 6635Three-dimensional reconstruction, 6049Three-dimensional structure, 1854Thrombin, 25Thrombolytic, 3303Thrombomodulin, 3310ThS, 3481Thylakoid membrane, 1235, 4201Thylakoids, 4808Thymocyte, 2149Thyroid-hormone, 1639Tight junction, 4851, 6179TIM protein, 179Time course, 5265Time-resolved spectroscopy, 2528c-TIP, 3872Tissue distribution, 3759Tissue engineering, 5338Tissue inhibitor of matrix metalloproteinase-1, 6417Tissue plasminogen activator, 6023Tissue-type plasminogen activator, 68793T3-L1 adipocyte, 64173T3-L1 cells, 3183TLR2, 4423TLR4, 4423Tn-antigen, 6775TNFa, 1904, 3953TNF-a, 41, 1272, 3947, 3975, 4081, 4423, 5571, 6465TNF-Æalphaæ, 6355TNF receptor, 3069TNF-related activation-induced cytokine, 832TNF-related apoptosis-inducing ligand, 1940Tobacco BY2, 6791Tobacco BY-2 cells, 4879Tobamovirus, 4479Toc34, 1343Tocopherol, 1357Tocopherol cyclase, 1357TOCSY, 3481Toll-like receptor, 1951, 6821Toll-like receptor 4, 699Toll-like receptors, 3330, 6519Toluene, 6247TOM1, 4479Tome-1, 1488TOP mRNA, 5517Topogenic determinants, 5643Topors, 5007TOR, 2433Total correlation spectroscopy, 3481Total internal reflection fluorescence microscopy, 1602Toxicity, 1878Toxin internalization, 3169TPR, 1279TPS1, 3999

Trafficking, 3019TRAIL, 4149trans-acting regulation, 2986Transactivation, 3560Transcription, 1220, 1424, 2609, 2853, 2883, 3258, 3401, 3539, 4278,

4666Transcription factor, 904, 1545, 3055, 3369, 4470Transcription regulation network, 1859Transcription repression, 1001Transcriptional activators, 909Transcriptional activity, 5119Transcriptional effect, 1911Transcriptional fussion assay, 3525Transcriptional gene silencing, 5872, 5889Transcriptional regulation, 66, 1509, 3063, 3579, 5785Transcriptional repression, 115, 6199Transcriptional/translational feedback loop, 3246Trans-factor, 3639Transfer RNA, 2807Transformation, 4757Transforming growth factor beta, 2551Transforming growth factor-b, 4615Transgene silencing, 5940Transgenic, 4997, 6237, 6265Transgenic mice, 753, 3613Transgenic plant, 6210, 6737Transgenic rapeseed, 1357Transglutaminase, 2092, 3297trans-Golgi network, 2177Transhydrogenase, 2863Transient interactions, 2891Transient receptor potential channel vanilloid type 1, 5135Transition metal transport, 783Transitivity, 5879Translation, 79, 529, 938, 959, 1061, 3467, 3751, 4492Translation initiation, 5685Translational regulation, 5517Translesion (CPD, BPDE, AP), 868Translocase, 1267Translocation, 2428, 4492Translocation mechanism, 4498Translocon, 916Transmembrane, 3855Transmembrane helix, 1633Transmembrane peptide, 5247Transmembrane potential, 4498Transmigration, 5487Transport, 633, 4119, 6673Transport motif, 5227Transport regulation, 2499Transport retardation, 4751Transporter, 3069Transporter assembly, 5765Transposition activity, 488Transposon, 4622, 5940, 6205Transthyretin-related proteins, 4769TRAPS, 5193Trastuzumab, 4149Trax-Translin complex, 3141Trehalose, 3999TRF2/TLF, 3401Triacylglycerol hydrolysis, 6067trifluoroacetic acid, 3481trifluoroethanol, 3481Trigger factor, 9483-(trimethylsilyl)propionic acid, 3481Tripeptidyl-peptidase I, 1383Triple helix, 6616Tripolyphosphate, 6223Triticum aestivum, 6890Tritium exchange, 1183tRNA, 30, 855, 969, 2156, 2629, 3467, 6017, 6769tRNA import, 1072tRNA maturation, 2945tRNA specificity, 6383tRNA splicing, 2945Trophinin, 6326Trophoblast, 398Trophoblast stem cell, 398Tropomyosin, 2261


Truncation, 6333Trypanosomiasis, 2191TSC2, 4763TSP, 3481T-type, 3907Tube, 3920Tuberculous pleural fluid, 643b-Tubulin cofactor A (TBCA), 3515Tumor aggressiveness, 2959Tumor antigen, 2873Tumor necrosis factor, 1707Tumor necrosis factor a, 3069, 4671, 6417Tumor necrosis factor-related apoptosis-inducing ligand, 4069, 5379Tumor necrosis factor-related apoptosis-inducing ligand-receptor

2, 5379Tumor suppressor, 2231, 3725, 5535Tumour, 2833Tumour inducing virus, 3037Tumour necrosis factor, 5193Tumour necrosis factor-a, 1539Tunnel crevice, 3207Twin-arginine translocase, 797Two-component system, 2065, 3970Two-component system Rv1626, 4145Two-photon microscopy, 325Two-substrates enzyme mechanism, 2817Type Va secretion, 1177Type 1 diabetes, 3975, 5759Type II diabetes, 1458Type II fatty acid synthesis, 4892Type 1 phosphatase, 6611Type II phosphatidylinositol phosphate kinase, 2868Type I secretion system, 4707Tyrosinase, 1187Tyrosinase promoter, 153Tyrosine phosphorylation, 3019, 3152Tyrosylprotein sulfotransferase, 53

U

U0126, 236UBA, 3224Ubiquinone, 4437Ubiquitin, 203, 571, 3126, 3214, 3224Ubiquitin ligase, 2557, 6796Ubiquitin-like protein, 3837Ubiquitin modification, 4678Ubiquitin–proteasome pathway, 3885Ubiquitin–proteasome system, 571, 1197Ubiquitin protein ligases, 3239Ubiquitin recognition, 5385Ubiquitin-specific protease, 3885Ubiquitin-specific protease 7, 4867Ubiquitination, 3231Ubisemiquinone, 500UBL, 3224UBX, 3224UCP3, 3411UDP-N-Acetylglucosamine 2-epimerase/N-acetylmannosamine-

kinase, 5079UGRP2, 2221UGT activity, 5343UIM, 3224Ulcerative colitis, 2261Ultraspiracle, 4961Uncoupling, 11Uncoupling protein, 313, 1670, 3136, 3411Uncoupling protein 3, 1639Uncoupling protein activity, 4437Uncoupling protein-1, 5680Uncoupling protein-2, 717Uncoupling protein-3, 717Unfolding, 1261Unfolding of insulin, 3927unr-interacting protein, 2348

Unsaturated fatty acid, 5157Urea cycle, 5527Uric acid, 4769Uricase, 4769Urocortin, 4259Uteroglobin-related protein 2, 2221UTPase, 495550-UTR, 1061Utrophin, 1079UV light, 873UVA, 6338Uvi31+, 591UV–Vis spectroscopy, 3147

V

V1 ATPase, 1961V1V0 ATPase, 1961v-Abl, 2986Vacuolar membrane, 3872Vacuolar-H+ ATPase G1, 6089Vacuolar-type ATPase, 1961Vacuole, 2648, 6890Validation, 5542, 5904Valproate, 723Valproic acid, 6716Vanilloid receptor 1, 5135Vascular endothelial growth factor, 1227, 2551, 5372, 5680, 6084Vascular endothelium, 6721Vascular smooth muscle cells, 5100Vascular smooth muscle cells differentiation, 281Vasocentric, 2564Vasodilator-stimulated phosphoprotein, 2339Vasopressin receptor, 4985Vasopressin V2 receptor, 5227VASP, 455V-ATPase, 2981, 4374, 4937Vector for peptide transfer, 6549Vector-based siRNA, 5988Veratridine, 4207Verotoxin, 6604Verprolin, 5253Vertebrate, 2267, 5911Very long chain fatty acid, 409, 4459Vesicle fusion, 2842Vesicular transport, 2821, 4226VHA-C, 1961Viability, 6885Vibrio cholerae, 373, 3449Vibrio mimicus, 2507VIGS, 5982Villin-related allergen, 3807Vimelysin, 5013Viral infection, 4911Viral membrane protein, 3607Viral miRNAs, 5965Viral non-structural proteins, 5685Viral silencing suppressor, 5958Viral suppressors, 5965Viral vector, 5974Viroporin activity, 3607Virus–cell interaction, 6699Virus–host interaction, 5958Visual cycle, 5414Vitamin A, 5414Vitamin A-deficiency, 3669Vitamin E, 1357Vitellogenin, 4961Vitreous, 4020VLDL-receptor, 5507VMA11, 2981VMA16, 2981Vma5p, 1961Voltage-dependent anion channel, 5105


Voltage-gated Na+ channel, 4181Volume regulation, 2087Vps10p, 1172

W

WAPL, 167WASP, 5253Water, 2254Water channel, 5814Water content, 6101Water oxidation, 3081Water permeability, 5549Wheat, 4887Whirly proteins, 3707Wilson disease, 3589Winged bean lectin, 6775WIP, 5253Wishful thinking, 4615Wiskott–Aldrich syndrome, 5253Wnt, 3539Wnt-3a, 4837Wnt/b-catenin signaling, 4213Wobble position, 2767Wound response, 5729WRKY, 1545WRN, 1350WW binding module, 4159WxxxF/Y motif, 3416

X

X-ALD, 5512Xanthomonas campestris, 3525Xanthophyll cycle, 4201Xenopus, 318Xeroderma pigmentosum, 873Xestospongin B, 2051XPO1, 969X-ray absorption spectroscopic, 1741X-ray absorption spectroscopy, 4287X-ray diffraction, 6010

b-1,3-Xylan, 4324Xylem parenchyma, 827Xylose fermentation, 763XylR, 813

Y

Y-box protein, 5372yeaS, 4629Yeast, 507, 943, 1109, 1529, 2847, 5152, 5318, 5718Yeast complementation, 2208Yeast two hybrid, 5275, 6439Yeast two-hybrid, 2623Yeast two-hybrid/spermatogenesis, 559Yeast two-hybrid system, 3731yeaT, 4629Yersinia outer protein H, 2339Y-family polymerase, 868YukD, 3837YycG, 2065

Z

Zabrotes subfasciatus, 5616ZAT, 4165ZD1839, 4069ZEB, 4610Zebrafish, 4843Zein, 3867Zinc, 4165Zinc binding, 5353Zinc finger, 892, 1376, 6205Zinc-finger protein, 507Zinc-a2-glycoprotein, 41Zinc ions, 2863Zinc transporter, 427Zip kinase, 4271ZIP transporter, 427ZIP14, 427Zn2+, 3461ZO-2, 3725Zona pellucida, 4692


febs letters volume 579 subject indexacute pancreatitis, 6355 acute phase response, 5791...

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