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Proteostasis: A Key Node in Longevity CSB Seminar February 24 th 2011 Angela Sanchez

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Page 1: February 2011CSB presentation

Proteostasis: A Key Node in Longevity

CSB SeminarFebruary 24th 2011Angela Sanchez

Page 2: February 2011CSB presentation

Aging is a universal process

Page 3: February 2011CSB presentation

• Need to compare populations with different life spans

• Use C. elegans

– Short-lived

– Cultivate large numbers

– Amenable to genetic manipulation

– Validated model system for humans

How can we uncover mechanism?

Page 4: February 2011CSB presentation

Cool Temperature Doubles Lifespan in C. elegans

Page 5: February 2011CSB presentation

Is cool-mediated longevity conserved?

• Biological response to temperature is ancient• Temperature fluctuated before oxygen

existed• We hypothesize that molecular responses to

non-stress inducing temperatures are conserved.

Page 6: February 2011CSB presentation

Cool temperature extends lifespan

Drosophila

30˚c

18˚c

VERTEBRATES? (Miquel 1976)

Page 7: February 2011CSB presentation

Cool temperature extends lifespan

Mouse

INCREASED 20% (Conti 2006)

Page 8: February 2011CSB presentation

Cool temperature correlates with longevity

Naked Mole Rat

(McNab 1966)

Page 9: February 2011CSB presentation

Cool temperature correlates with longevity

Caloric Restriction

(Lane 1996)

Page 10: February 2011CSB presentation

Cool temperature correlates with longevity

Ames Dwarf

Ames Dwarf

(Hunter 1999)

Page 11: February 2011CSB presentation

Cool temperature correlates with longevity

Long-lived human

(Roth 2002)

Page 12: February 2011CSB presentation

Why does cool temperature improve health and survival?

Underlying mechanism not understood

Page 13: February 2011CSB presentation

Understanding healthy long term-survivalMicroarray

• Affymetrix C. elegans array

• Genome wide snapshot

• UNBIASED

• PRIMARY biological response to a chronic change

Page 14: February 2011CSB presentation

Looking early for an initiating cause

Page 15: February 2011CSB presentation

Preparation of samples for microarray

L1

L2

L3

L4

Immature Adult

Development

Total RNA Total RNA

Mature Adult

Visible Developmental Stage

15°C

15°C 25°C

Four Biological Samples

Page 16: February 2011CSB presentation

Temperature Regulated Genes

19,762 Predicted Genes

16,896 Probes

383 Differentially Expressed

179

P<.01

280

Suggests part of molecular response mechanism Transcriptional

Page 17: February 2011CSB presentation

Number of Temperature Regulated Genes

Gene Ontology Categories (Curtis, Tavare’, Takano, Sanchez, Larsen, unpublished)

Page 18: February 2011CSB presentation

Proteostasis Genes Differentially Expressed by Temperature Higher at 25˚C Lower at 25˚C Proteostasis: 11 genes Proteostasis : 48 genes Protein synthesis (0) Protein synthesis (26) translation ribosomal biogenesis rRNA processing tRNA processing mRNA processing rRNA/tRNA processing rRNA transcription rRNA/tRNA transcription ribosome assembly regulation of translation proteolysis (4) proteolysis (18) protein modification process (3) protein modification process (1) protein folding protein folding protein glycosylation

(Curtis, Tavare’, Takano, Sanchez Larsen, unpublished)

Page 19: February 2011CSB presentation

Differentially Expressed Proteases

cpr-1 Cathepsin Bcpr-4 Cathepsin BW07B8.1 Cathepsin BF21D5.2 Cathepsin Bcpr-7 Cathepsin B

K10C2.1 Cathepsin AK10B2.2 Cathepsin A

asp-1 Cathepsin Dasp-3 Cathepsin Dasp-5 Cathepsin Easp-6 Cathepsin DF21F8.4 Cathepsin EK10C2.3 Cathepsin CC15C8.3 Cathepsin EY39B6A.24 Cathepsin D

Aspartyl Cysteine Serine

Classified by active siteOnly subset are temperature regulated

19 in genome

24 in genome

10 in genome

Page 20: February 2011CSB presentation

Working model of biological response to chronic temperature conditions

Decreased protein synthesis and degradation

Increased protein synthesis and degradation

Page 21: February 2011CSB presentation

HYPOTHESIS

Proteostasis is a key mechanismfor healthy long-term survival in animals

with cool core body temperature

Page 22: February 2011CSB presentation

Specific Aim 1 Specific Aim 2 Specific Aim 3

Determine whether differentially expressed proteases functions in life-limiting or survival-enhancing processes. 15°C and 25°C

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

daf-2

Determine if daf-2 has shared or independent mechanism of longevity with temperature

Page 23: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases mRNA

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

c) Determine if daf-2 has shared or independent mechanism of longevity with temperature

Page 24: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

i) qRT-PCR

ii) Magic Red

Page 25: February 2011CSB presentation

** *

**

**

** *

* *

*

Verify temperature regulation of lysosomal proteasesqRT-PCR verification (1a-i)

Normalized Ct levels

Temperature regulation confirmed13/15

Range of expression levels1000X

Page 26: February 2011CSB presentation

Further investigation warranted

• Microarray result is VALID

• RT-PCR large differences

Page 27: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

i) qRT-PCR

ii) Magic Red

Page 28: February 2011CSB presentation

• In vivo substrate linked to fluorophore

• Measure ACTIVITY

Cathepsin Substrate

Verify temperature regulation of lysosomal proteasesMagic Red (1a-ii)

Page 29: February 2011CSB presentation

15°C25°CEffect of temperature on Cathepsin Activity

Cathepsin Activity is HIGHER at 15°C

(Sanchez, Larsen, unpublished)

Page 30: February 2011CSB presentation

Further investigation warranted

• Microarray result is VALID

• RT-PCR large differences

• Cathepsin activity is elevated at 15⁰C

Page 31: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

i) qRT-PCR

ii) Magic Red (IN PROGRESS)

Remaining:Quantitative analysisRepeat

Page 32: February 2011CSB presentation

asp-3F21F8.4

Control RNAi Control RNAi

How Effective is RNAi

(Sanchez, Larsen, unpublished)

Page 33: February 2011CSB presentation

asp-6

Control RNAi Control RNAi

How Effective is RNAicpr-1

(Sanchez, Larsen, unpublished)

Page 34: February 2011CSB presentation

cpr-7

Control

How Effective is RNAi

RNAi Control RNAi

(Sanchez, Larsen, unpublished)

K10C2.3

Page 35: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

Page 36: February 2011CSB presentation

Prediction: Simple Model

Everything at 15C is pro-survivalMimic cool to live long

Everything that 25C is promotes agingMimic warm to promote aging

Pro-survival Pro-Aging

Page 37: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

i) RNAi of temperature regulated

proteases

ii) Pharmacological lysosomal inhibitors

iii) RNAi of lysosomal components

Page 38: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

i) RNAi of temperature regulated

proteases

Page 39: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p= 0.9255n=105Trials:3

p= 0.1148n=87Trials:2

Page 40: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p= 0.6739n=80Trials:3

p= 0.2731n=98Trials:2

Page 41: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p= 0.7517n=100Trials:3

p= 0.8478n=111Trials:2

Page 42: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p=0.15n=77Trials:4

p= 0.1419n=95Trials:2

Page 43: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p= 0.3952n=103Trials:3

p= 0.0058n=84Trials:2

Page 44: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p= 0.7940n=100Trials:2

p= 0.3681n=94Trials:2

Page 45: February 2011CSB presentation

RNAi of a temperature regulated gene in wild type: cpr-7

p<.001n=75 Trials:3

15˚C 25˚C

n=75Trials:3

p=.0162

Page 46: February 2011CSB presentation

exon-1

asp-1-1 RNAi clone

212bpRT-PCR

479bp

asp-1 RNAi clone design

567bpasp-1-2 RNAi clone

• Two independent clones

• Overlapping

Page 47: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

Similar results with RNAiasp-6 asp-5 K10C2.3

asp-3 asp-3 F21F8.4

p=0.15n=77Trials:2

p=0.97n=82Trials:2

Page 48: February 2011CSB presentation

Model Testing

• mRNA change is real • Is this a correlation or functionally relevant• Assay in vivo protease activity• manipulate lysosomal protease activity and

assay is functionally important for longevity– Pharmacological inhibitor– RNAi

Page 49: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

i) RNAi of temperature regulated

proteases

ii) Pharmacological lysosomal inhibitors

Page 50: February 2011CSB presentation

•Cell permeable•Protonated in acidic lysosome•Protonated form becomes trapped•Increases pH•Acidity required for lysosomal enzyme activity

Lysosomal inhibitors

(Rejingoud 1976)

LYSOSOME

H+

pH

Page 51: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

ii) Pharmacological lysosomal inhibitors

*Dosage response curves*Verify deacidification of

lysosomes

Page 52: February 2011CSB presentation

• Lysosensor yellow/blue• Excitation is pH dependent• More blue = more basic• More yellow = more acidic

Verifying deacidification of lysosomes

BLUE YELLOW

ACIDICBASIC

Page 53: February 2011CSB presentation

Control

20mM Chloroquine

15C Lysosensor Yellow/BlueCFP YFP CFP/YFP

Page 54: February 2011CSB presentation

Quantitation of 15C Lysosensor Yellow/Blue

• Measured Grey ValueCFPYFP

• Calculate ratio ofYFP/CFP

No detectable differenceLarge variability

Page 55: February 2011CSB presentation

Effect of lysosomal inhibitors on lifespan

DECREASES LIFESPAN at 15˚C

10mM Chloroquine15˚C 25˚C

Lysosomal Inhibition DETRIMENTAL at 15˚C and BENEFICIAL at 25˚C

INCREASES LIFESPAN at 25˚C

n=75p= 0.0028*

n=64p= <.0001*

Page 56: February 2011CSB presentation

Effect of lysosomal inhibitors on lifespan

DECREASES LIFESPAN at 15˚C

25mM NH4Cl15˚C 25˚C

Lysosomal Inhibition DETRIMENTAL at 15˚C and BENEFICIAL at 25˚C

INCREASES LIFESPAN at 25˚C

n=81p <.0001*

n=80p= 0.3578

Page 57: February 2011CSB presentation

Effect of lysosomal inhibitors on lifespan

n=81p= <.0001*

Alternative Explanations

• Affecting non-lysosomal processes

• Inhibiting bacterial growth

• Behavioral changesfood avoidancedietary restriction

Page 58: February 2011CSB presentation

Effect of lysosomal inhibitors on lifespan

n=81p= <.0001*

Alternative Strategies

• Vacuolar H+/ATPase13 subunits in c elegansPump H+ into lysosomeResulting in acidification

LYSOSOMEH+

pH

H+

H+

AdvantagesNo food interferenceincreased specificity

Page 59: February 2011CSB presentation

Specific Aim 1

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

a) Verify temperature regulation of lysosomal proteases

b) Do lysosomal proteases contribute to healthy long-term survival at 15°C or 25°C

i) RNAi

ii) Pharmacological lysosomal inhibitors

Page 60: February 2011CSB presentation

Effect of lysosomal inhibitors on lifespanAlternative Strategies

Page 61: February 2011CSB presentation

Control

vha-15 RNAi

15C Lysosensor Yellow/BlueCFP YFP CFP/YFP

Page 62: February 2011CSB presentation

Quantitation of 15C Lysosensor Yellow/Blue

No detectable differenceLarge variability

Page 63: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p=0.6458n=65

p=0.4439n=79

Page 64: February 2011CSB presentation

15˚C 25˚C

RNAi of temperature regulated lysosomal proteases

p=0.9367n=68

p=0.1064n=79

Page 65: February 2011CSB presentation

Prediction: Simple Model

Elevated proteases at 15C promote survivalReduced proteases at 25C promote aging

Pro-survival Pro-Aging

Page 66: February 2011CSB presentation

Prediction: Revised Model

Elevated proteases at 15C promote survival at 15CReduced proteases at 25C promote aging

Pro-survival Pro-Aging

Condition Specific Pro-survival

Page 67: February 2011CSB presentation

Prediction: Revised Model

Elevated proteases at 15C promote survival at 15CReduced proteases at 25C promote survival

Pro-survival Pro-Aging

Condition Specific Pro-survival

Page 68: February 2011CSB presentation

Prediction: Revised Model

Elevated proteases at 15C promote survival at 15CReduced proteases at 25C promote survival at 25C

Pro-survival Pro-Aging

Condition Specific Pro-survival

Page 69: February 2011CSB presentation

Specific Aim 1 Specific Aim 2 Specific Aim 3

Determine whether differentially expressed proteases functions in life-limiting or survival-enhancing processes. 15°C and 25°C

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

Determine if daf-2 has shared or independent mechanism of longevity with temperature

daf-2

Page 70: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

b) Is lysosome structure or number altered by protease reduction via RNAi?

c) Are tissues differentially impacted by temperature or protease reduction?

Page 71: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

i) Lysotracker staining

Page 72: February 2011CSB presentation

Specific Aim 2

a) Is lysosome structure or number altered by elevated temperature?

i) Lysotracker staining

Accumulates in acidic organelles

Fluorescent red15C 25C Control RNAi

v v

Expect accumulation of lysotracker

Page 73: February 2011CSB presentation

DAY 2 DAY 7 DAY 13Control (15⁰C)

F57F5.1 (15⁰C)

Control (25⁰C)

Temperature accelerates accumulation of lysotrackercpr-7 RNAi accelerates accumulation of lysotracker

Specific Aim 2a lysosomes altered by elevated temperature?

Page 74: February 2011CSB presentation

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

• 60X Magnification with 2X zoom

• 8um/pixel

• 1um/slice Z-stacks

• Anterior intestinal region

• Have whole worm data

Page 75: February 2011CSB presentation

Image J Particle AnalyzerCalculates Area

Returns number of particles

Confocal Image Image J Drawing

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 76: February 2011CSB presentation

15˚C Day 1 25˚C Day 1

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 77: February 2011CSB presentation

15˚C Day 1 25˚C Day 1

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 78: February 2011CSB presentation

15˚C Day 1 25˚C Day 1

n=1Avg Area:1.02# of particles:369

n=5Avg Area:1.52# of particles:1213

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 79: February 2011CSB presentation

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 80: February 2011CSB presentation

25˚C Day 1 25˚C Day 7

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 81: February 2011CSB presentation

25˚C Day 1 25˚C Day 7

n=5Avg Area:2.57# of particles:931.25

n=5Avg Area:1.52# of particles:1213

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 82: February 2011CSB presentation

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 83: February 2011CSB presentation

25˚C Day 7

n=5Avg Area:0.621# of particles:2136.7

15˚C Day 7

n=5Avg Area:2.57# of particles:931.25

Page 84: February 2011CSB presentation

Is lysosome structure or number altered by elevated temperature?Confocal Microscopy

Page 85: February 2011CSB presentation

Specific Aim 2

a) Is lysosome structure or number altered by elevated temperature?

i) Lysotracker stainingRemaining

Quantitative analysis Repeat experiments

(IN PROGRESS)

Page 86: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

b) Is lysosome structure or number altered by protease reduction via RNAi?

Page 87: February 2011CSB presentation

15C Day 7 cpr-7 RNAi

n=5Avg Area:0.621# of particles:2136.7

15˚C Day 7

n=2Avg Area:2.19# of particles:971

Is lysosome structure or number altered by protease RNAi?Confocal Microscopy

Page 88: February 2011CSB presentation
Page 89: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

b) Is lysosome structure or number altered by protease reduction via RNAi?

c) Are tissues differentially impacted by temperature or protease reduction?

Page 90: February 2011CSB presentation

RNAi of a temperature regulated gene in wild type: cpr-7

p<.001n=75

15˚C 25˚C

n=75p=.0162

Healthspan alert!>90% of animals are paralyzed as middle aged adults at

15C when treated with RNAi

Page 91: February 2011CSB presentation

cpr-7 15°C day 2

cpr-7 Progressive Paralysis: Young

Control 15°C day 2

cpr-7 25°C day 2Control 25°C day 2

Page 92: February 2011CSB presentation

cpr-7 15°C day 8Control 15°C day 8

cpr-7 25°C day 8Control 25°C day 8

cpr-7 Progressive Paralysis: Middle Aged

Page 93: February 2011CSB presentation

cpr-7 Progressive Paralysis

15⁰C Day 8

Page 94: February 2011CSB presentation

RNAi 15°C day 12

RNAi 25°C day 12Control 25°C day 12

Control 15°C day 12

cpr-7 Progressive Paralysis: Day 12

Page 95: February 2011CSB presentation

Quantification of cpr-7 RNAi induced paralysis at 15°C

(Sanchez, Larsen, unpublished)

92% 90/97 worms paralyzedvs17% 16/95 control

Page 96: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

b) Is lysosome structure or number altered by protease reduction via RNAi?

c) Are tissues differentially impacted by temperature or protease reduction? i) Neurotransmitter pharmacology

ii) Tissue-specific RNAi

Page 97: February 2011CSB presentation

Pharmacological Neurotransmitters Electrical Stimulation

PREDICTIONTEST

No muscle contractionNo muscle contraction

Specific Aim 2c Paralysis in cpr-7 RNAi :muscles or neurons?Neurotransmitter Expected Results

MUSCLE

Page 98: February 2011CSB presentation

Specific Aim 2

c) Is the paralysis observed in cpr-7 RNAi treated animals at 15C due to decreased function of muscles or neurons?

i) Neurotransmitter

pharmacology

•302 Neurons

•74 motor neurons

• GABA-nergic (INHIBITORY)

•Cholinergic (EXCITATORY)

Page 99: February 2011CSB presentation

Specific Aim 2

b) Is the paralysis observed in cpr-7 RNAi treated animals at 15C due to decreased function of muscles or neurons?

i) Neurotransmitter

pharmacology

HYPER CONTRACTION

• (-)GABA-nergic (INHIBITORY)

• (+) Cholinergic (EXCITATORY)

FLACCID

• (+) GABA-nergic (INHIBITORY)

• (-) Cholinergic (EXCITATORY)

Types of Paralysis

Page 100: February 2011CSB presentation

PREDICTION

DrugAldicarb (cholinesterase inhibitor)

Specific Aim 2b Paralysis in cpr-7 RNAi :muscles or neurons?Neurotransmitter Expected Results

NEURONAL

Levamisole (cholinergic agonist)

PTZ (GABA antagonist)

Muscmimol (GABA agonist)

Hyper-Contract Flaccid(-)GABA (+) GABA(+) Cho (-) Cho

No EffectNo Effect No EffectNo Effect No EffectNo Effect Contract

Relax

No Effect No Effect No EffectContractRelax No Effect No Effect No Effect

Page 101: February 2011CSB presentation

Specific Aim 2c Paralysis in cpr-7 RNAi :muscles or neurons?Preliminary Data

Drug Recommended Actual Paralyzed

Aldicarb 500uM 1mM 0/10

Drug Recommended Actual Paralyzed

PTZ 2.5-10mg/ml 20mg/ml 6/10

Drug Recommended Actual Paralyzed

Muscimol 3mM 3mM 0/10

Suggests temperature dependent dosage

Page 102: February 2011CSB presentation
Page 103: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature?

b) Is lysosome structure or number altered by protease reduction via RNAi?

c) Are tissues differentially impacted by temperature or protease reduction? i) Neurotransmitter pharmacology

ii) Tissue-specific RNAi

(IN PROGRESS)

Page 104: February 2011CSB presentation

Specific Aim 2

c) Is the paralysis observed in cpr-7 RNAi treated animals at 15C due to decreased function of muscles or neurons?

ii) Tissue-specific RNAi

rde-1(ne219)required for DICER complextissue-specific rescueRNAi occurs only in targeted

tissue

Page 105: February 2011CSB presentation

Specific Aim 2b Paralysis in cpr-7 RNAi :muscles or neurons?ii Tissue specific RNAi

*Neuronalunc-25p:rde-1 ;rde-1(ne219)

RNAi rescue in GABA-nergic neurons (McIntire 1993)

cha-1p:rde-1;rde-1(ne219) RNAi rescue in cholinergic neurons.

*Muscle specific rde-1(ne219);neIs9[myo-3::HA::RDE-1 + pRF4(rol-6)]

RNAi rescue only in body wall muscle.

*rde-1(ne219) kzIs20[pDM#715(hlh-1p::rde-1) + pTG95(sur-5p::nls::GFP)]

RNAi rescue only in body wall muscle.

Page 106: February 2011CSB presentation

Specific Aim 2b Paralysis in cpr-7 RNAi :muscles or neurons?Tissue specific RNAi: Expected Results

Neuronal-specific

Muscle-specific

Neuronal Muscle

Paralysis

No Effect

No Effect

Paralysis

RNAi Both

Paralysis

Paralysis

Other

No Effect

No Effect

Page 107: February 2011CSB presentation

Specific Aim 2

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

a) Is lysosome structure or number altered by elevated temperature or protease reduction via RNAi?

b) Is the paralysis observed in cpr-7 RNAi treated animals at 15C due to decreased function of muscles or neurons?

i) Neurotransmitter pharmacology

ii) Tissue-specific RNAi

(IN PROGRESS)

(READY TO START)

Page 108: February 2011CSB presentation

Specific Aim 1 Specific Aim 2 Specific Aim 3

Elucidate the function of lysosomal proteases regulated by temperature in healthy long-term survival at 15°C and 25°C

Determine if altered protease expression causes cellular and tissue changes that subsequently result in healthy long term survival

Determine if daf-2 has shared or independent mechanism of longevity with temperature

daf-2

(IN PROGRESS)

Page 109: February 2011CSB presentation

Temperature

Manipulations That Double Lifespan in C. elegans

GeneticEnvironment

daf-2 gene

Wild Typedaf-2

Page 110: February 2011CSB presentation

ins genes are temperature regulated

HIGHER AT 15Cdaf-28ins-28ins-29ins-35ins-25ins-20ins-34ins-5

ins-23ins-4

ins-22ins-30

LOWER AT 15Cins-19ins-11 ins-16ins-27ins-31

Page 111: February 2011CSB presentation

What is daf-2?• Putative receptor kinase• Homologous to human insulin/IGF receptor/insulin-

related receptor• Recessive hypomorphs

m41G380E

m579R434C

m596G544S

m577C1042Y

e1370P1465S

N- -CLigand binding Tyrosine kinase

Page 112: February 2011CSB presentation

Gene x Environment Interactiondaf-2 cool vs warm

daf-2 mutants have a non-wild type response to temperatureand are long lived

WTm41

e1370m596

m5790

20

40

60

80

15˚C22.5˚C

daf-2 allele

Maximal Adult

Life Span(DAYS)

Page 113: February 2011CSB presentation

Possible explanation for daf-2 abnormal temperature phenotype

• daf-2 mutations not as mutant at 15˚C

WTm41

e1370m596

m5790

20

40

60

80

15˚C22.5˚C

daf-2 allele

Maximal Adult

Life Span(DAYS)

Page 114: February 2011CSB presentation

Possible explanation for daf-2 abnormal temperature phenotype

• daf-2 mutations do live longer than WT at 15˚C• Are daf-2 mutants less responsive to temperature?

Page 115: February 2011CSB presentation

Number of Temperature Regulated Genes

(Curtis, Tavare’, Takano S. Larsen P. et al.)

N2 m41 m577 e1370 m596 m5790

500

1000

1500

2000

2500

3000

3500

4000

179

703461

1618

645828

280

779

441

1792

810

1048

daf-2 allele

Page 116: February 2011CSB presentation

Possible explanation for daf-2 abnormal temperature phenotype

• daf-2 mutations do live longer than WT at 15C• daf-2 mutants are hyper responsive to temperature• Expression of daf-2 gene altered in mutants?

Page 117: February 2011CSB presentation

Prediction: Revised Model

Elevated proteases at 15C promote survival at 15CReduced proteases at 25C promote survival at 25C

Pro-survival Pro-Aging

Condition Specific Pro-survival

Page 118: February 2011CSB presentation

Specific Aim 3

A) microarray

B) qRT-PCR

C) RNAi of temperature regulated genes

Determine if daf-2 has shared or independent mechanism of longevity with temperature

daf-2

Page 119: February 2011CSB presentation

daf-2: Shared or independent mechanisms with temperature Microarray Analysis

•Temperature regulation lost in some daf-2 mutants

•Elevated levels by daf-2 at 25˚C for some

Page 120: February 2011CSB presentation

daf-2: Shared or independent mechanisms with temperature Microarray Analysis

•daf-2 mutation induces temperature regulation

•Elevated levels by daf-2 at 25˚C for some

Page 121: February 2011CSB presentation

Temperature Regulation p values Gene Description N2 daf-2(m41) daf-2(m577) daf-2(m596) daf-2(m579) asp-4 Aspartyl protease 1 0.008807 0.027883 0.009639 0.026397

T14F9.3 Beta-N-acetylhexosaminidase 0.626127 4.20E-08 1.40E-05 2.24E-06 8.53E-07 pho-14 Lysosomal phosphatases 1 0.001881 0.008924 0.008726 0.011879

Y37D8A.2 phospholipase-B 0.34562 0.026767 0.000792 4.62E-05 1.52E-06 acl-12 Lysophosphatidic acyltransferase 0.980377 0.000231 2.60E-02 0.006811 1.98E-05

T19B10.3 Beta-galactosidase 0.357722 0.012278 7.49E-03 6.42E-05 0.000119 K11G9.5 Sialin Solute transport 0.716823 0.049115 0.007736 0.000675 0.000449

Temperature Regulation p values Gene Description N2 daf-2(m41) daf-2(m577) daf-2(m596) daf-2(m579)

F28A12.4 Aspartyl protease 0.837792 0.274683 0.499305 0.011814 0.005419 cpz-1 Cysteine proteinase Cathepsin L 0.682801 0.151837 0.307674 0.001988 0.008102

H22K11.2 Beta-galactosidase 0.978491 0.958974 0.512632 0.00008 0.013544 ZK563.6 Lysosomal phosphatases 0.894114 0.838573 9.72E-01 0.010806 0.00852

lys-3 N-acetylmuraminidase/lysozyme 1 0.65643 0.84658 0.044525 0.009436

Additional lysosomal proteins regulated by temperature in daf-2 mutants

Temperature regulated in all daf-2 not WT

Temperature regulated in strong daf-2

Page 122: February 2011CSB presentation

daf-2: Shared or independent mechanisms with temperature

•Loss of temperature regulation in some proteases

•Comparable levels by microarray

•Additional temperature regulated in daf-2

•Suggests ENHANCED lysosomal function in daf-2

Microarray Analysis

Page 123: February 2011CSB presentation

Specific Aim 3

Determine if daf-2 has shared or independent mechanism of longevity with temperature

a Determine if regulation of temperature regulated proteases is altered by daf-2 mutation

i) microarray

ii) qRT-PCR

daf-2

Page 124: February 2011CSB presentation

qRT-PCR Lysosomal Proteases: daf-2(m41)

cpr-1 F21F8.4 F21D5.2 K10C2.3 W07B8.1

ELEVATED mRNA levels of proteases in daf-2 (m41)

Page 125: February 2011CSB presentation

qRT-PCR Lysosomal Proteases: daf-2(m596)

ELEVATED mRNA levels of proteases in daf-2 (m596)

asp-6 cpr-7 cpr-4 asp-1

Page 126: February 2011CSB presentation

qRT-PCR Lysosomal Proteases: daf-2(m41);daf-16

Some daf-2 regulated proteases are daf-16 dependent

K10C2.3 cpr-1 F21F8.4

Page 127: February 2011CSB presentation

daf-2: Shared or independent mechanisms with temperature

•Loss of temperature regulation in some proteases

•Increased mRNA levels of some lysosomal proteases

•Some are daf-16 dependent

•Suggests ENHANCED lysosomal function in daf-2 that is

partially daf-16 dependent

qRT-PCR Preliminary results

Page 128: February 2011CSB presentation

daf- 2 qRT-PCR Lysosomal ProteasesRemaining Experiments

Page 129: February 2011CSB presentation

Specific Aim 3

A) microarray

B) qRT-PCR

C) RNAi of temperature regulated genes

Determine if daf-2 has shared or independent mechanism of longevity with temperature

daf-2

(IN PROGRESS)

Page 130: February 2011CSB presentation

0 5 10 15 20 250

102030405060708090

100

0 5 10 15 20 250

20

40

60

80

100

RNAi knockdown of cpr-7 results in paralysis at 15°C

0 5 10 15 20 250

102030405060708090

100

0 5 10 15 20 250

102030405060708090

100

2 4 6 8 10 12 14 16 18 20 220

20

40

60

80

100m596

2 4 6 8 10 12 14 16 18 20 220

20

40

60

80

100

wild type

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)

(Sanchez, Larsen, unpublished)

Page 131: February 2011CSB presentation

wild type

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p<.001

p= 0.84p=.3364

p=0.1809 p= 0.0006

p<.0001

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

15˚C cpr-7 RNAi

Page 132: February 2011CSB presentation

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p=.0162

p= 0.5658p= 0.7916

p= .0007 p= 0.5424

p= 0.1239wild type

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

25˚C cpr-7 RNAi

Page 133: February 2011CSB presentation

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

25˚C asp-1 RNAi

p= 0.3800n= 87

p= 0.0025*n= 76

Page 134: February 2011CSB presentation

RNAi of temperature regulated genes in daf-2 mutants15˚C asp-1 RNAi

p= 0.0009*n= 80

p= <.0001*n= 77

p= <.0001*n= 59

p= 0.0013*n= 56

Page 135: February 2011CSB presentation

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p<.0001

p<.0001p<.0001

p<.0001 p<.0001

p<.0001

wild type

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

25˚C eiF3A RNAi

Page 136: February 2011CSB presentation

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p<.0001

p= 0.6831 p= .0014

p= 0.4785 p= <.0001

p= 0.0012wild type

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

25˚C eiF4G RNAi

Page 137: February 2011CSB presentation

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p= 0.0799

p= .4760p= .0034

p= 0.2573

p= 0.0694

p= 0.838

wild type

Specific Aim 1c RNAi of temperature regulated genes in daf-2 mutants

15˚C eiF3A RNAi

Page 138: February 2011CSB presentation

daf-2(m41)

daf-2(m577)

daf-2(m596)

daf-2(m579)

daf-2(e1370)p= 0.2576

p= 0.9445p= 0.938

p= 0.619 p= 0.3825

p= 0.0003wild type

Specific Aim 3c RNAi of temperature regulated genes in daf-2 mutants

15˚C eiF4G RNAi

Page 139: February 2011CSB presentation

DAF-2

Temperature 25C (WARM)

Lysosomal Proteases

Protein Synthesis

Promotes Survival at 25C

DAF-2

Temperature 15C (COOL)

Lysosomal Proteases

Protein Synthesis

Promotes Survival at 15C

Signaling is Active

Signaling is Reduced?

Page 140: February 2011CSB presentation

Temperature

Shared Mechanism of Longevity?

GeneticEnvironment

daf-2 gene

Wild Typedaf-2

Page 141: February 2011CSB presentation

DAF-2Temperature

Lysosomal Proteases

Protein Synthesis

Proteostasis genes are regulated by

BOTH daf-2 and temperature

REGULATION IS SHARED

Shared Mechanism of Longevity?

Page 142: February 2011CSB presentation

DAF-2Temperature

Lysosomal Proteases

Protein Synthesis

Temperature Promotes survival by manipulation of this node

Does not appear to be a shared mechanism between daf-2 and temperature

Shared Mechanism of Longevity?

Promotes Survival

?

Page 143: February 2011CSB presentation

DAF-2Temperature

Lysosomal Proteases

Protein Synthesis

In the event of daf-2 mutation

Proteostasis node becomes disregulated

Can no longer respond appropriately to an environmental change

Presents a liability for daf-2 mutants

Shared Mechanism of Longevity?

Promotes Aging

?

Page 144: February 2011CSB presentation

Revised Model

Occur concurrently

Pro-survival Pro-Aging

Condition Specific Pro-survival

Page 145: February 2011CSB presentation

AcknowledgementsCommittee Members Larsen Lab

CollaboratorsFunding

Dr. Shelly Buffenstein

Dr. Ellen Kraig

Dr. Merry Lindsey

Dr. Olivia Smith

Dr. Syuichi Takano

Wendy Lee

Dr. Hal Boylston

Dr. Pamela Larsen

NIA Training GrantGlenn Medical FoundationEllison Medical Foundation

Dr. Simon Tavaré

Dr. Christina Curtis

ff =∫ d x≠ ⅔∑

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Page 147: February 2011CSB presentation

Pharmacological lysosomal inhibitors

• 0, 10, 25, 50, 75 and 100 mM NH4Cl at 15°C and 25°C (Broeks 1995)

• 0,1,5,10,20 mM chloroquine at 15°C and 25°C (Hujova 2005)

• NOT used for lifespans

dose response curves

Page 148: February 2011CSB presentation

Pharmacological lysosomal inhibitors

(Seglan 1976)(Klempner 1983)(Jones 1984)

Chloroquine NH4ClpH

• Decreases pH

• Vacuolization

Page 149: February 2011CSB presentation

25˚C Day 7

n=5Avg Area:0.621# of particles:2136.7

15˚C Day 7

n=5Avg Area:2.57# of particles:931.25