fair for plan
TRANSCRIPT
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FAIR FOR PLAN
K A R S T E N K R Y G E R H A N S E NC H I E F C O N S U LTA N T
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Image CC-BY-SA by SangyaPund
Not only about public dataNot only about restricted dataNot a quality standardApplied different across domainsA way to start – not a last minute “conversion”
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PRINCIPLES
Definitions from Oxford Languages
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AAU POLICY- ON FAIR
“4.3. The management of research data takes place in accordance with the intentions of the FAIR principles that aim to make research data retrievable, (F: Findable), reachable (A: Accessible), interpretable (I: Interoperable) and possible to reuse (R: Reusable) – hence FAIR. The FAIR principles always take the assurance of the necessity of data confidentiality into account. FAIR thinking applies to the entire research process, including choice of scientific method, data formats, documentation etc.”https://www.handbook.aau.dk/document/?contentId=402570
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5FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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IMPACT ON PRACTICE
Concept and planning
Exploring and organising
Collection and analysis
Output and publications
Impact and engagement
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MAN VS MACHINE
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MACHINE ACTIONABLE
a) identify the type of object (with respect to both structure and intent)
b) determine if it is useful within the context of the agent’s current task by interrogating metadata and/or data elements
c) determine if it is usable, with respect to license, consent, or other accessibility or use constraints, and
d) take appropriate action, in much the same manner that a human would.
Wilkinson, M. D. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data 3:160018 doi: 10.1038/sdata.2016.18 (2016)
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Prerequisite: (Research) software / infrastructure / method support
”It cannot be applied to us ….”Might require a transition in software and/or method
Image CC-BY-SA by SangyaPund
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THREE REPEATED TERMS
RepositoryStandard(meta)data
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REPOSITORY TYPES
A black box service- the visiting analogy
A library- the download analogy
Generic vs subject specific
An interface (API)- the query analogy
SELECT ?item ?itemLabel 2 WHERE 3 { 4 ?item wdt:P31wd:Q146. 5 SERVICEwikibase:label { bd:serviceParamwikibase:language"[AUTO_LANGUAGE],en". } 6 }
FAIR Data Point
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METADATA – AND STANDARDS
CC
BY-
SA 3
.0. P
hoto
by
max
ious
per O
pen
Food
Fac
ts
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METADATA
DescriptiveStructuralAdministrativeIntrinsicUser generated
Create Analyze Publish
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METADATA
DescriptiveStructuralAdministrativeIntrinsicUser generated
Create Analyze Publish
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METADATA
DescriptiveStructuralAdministrativeIntrinsicUser generated
Create Analyze Publish
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METADATA
DescriptiveStructuralAdministrativeIntrinsicUser generated
Create Analyze Publish
GoodBadUgly
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METADATA
DescriptiveStructuralAdministrativeIntrinsicUser generated
Create Analyze Publish
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STANDARDS(META)DATA
Agreed representation of data/information
Allows for (some) common interpretation
https://fairsharing.org/standards/?q=&selected_facets=status:Ready&selected_facets=recommended:true
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STANDARDS- FILE FORMATS
Time to live
Purpose
Requirements
Balance• Open or proprietary• Software compliance• Capabilities• Standards and documentation
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THREE REPEATED TERMS
Repository(meta)dataStandard
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21FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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I1. (Meta)data use a formal, accessible, shared, and broadly applicable language for knowledge representation.
I2. (Meta)data use vocabularies that follow FAIR principles
I3. (Meta)data include qualified references to other (meta)data
22FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
https://asistdl.onlinelibrary.wiley.com/doi/epdf/10.1002/bult.2013.1720390211
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Language is (too) ambiguousOpen file formats, but …
23FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
https://asistdl.onlinelibrary.wiley.com/doi/epdf/10.1002/bult.2013.1720390211
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https://github.com/tensorflow/tensorflow/blob/r2.0/tensorflow/core/example/example.proto
An Example for a movie recommendation application:// features {// feature {// key: "age"// value { float_list {// value: 29.0// }}// }// feature {// key: "movie"// value { bytes_list {// value: "The Shawshank Redemption"// value: "Fight Club"// }}
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// features {// feature {// key: "age"// value { float_list {// value: 29.0// }}// }// feature {// key: "movie"// value { bytes_list {// value: ”EIDR:10.5240/982A-B71D…"// value: "Fight Club"// }}
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28FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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R1. Meta(data) are richly described with a plurality of accurate and relevant attributes
R1.1. (Meta)data are released with a clear and accessible data usage license
R1.2. (Meta)data are associated with detailed provenance
R1.3. (Meta)data meet domain-relevant community standards
29FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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30FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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31FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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32FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
F1. (Meta)data are assigned a globally unique and persistent identifier
F2. Data are described with rich metadata (defined by R1 below)
F3. Metadata clearly and explicitly include the identifier of the data they describe
F4. (Meta)data are registered or indexed in a searchable resource
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33FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
DOI example:10.5281/zenodo.2248200 => https://doi.org/10.5281/zenodo.2248200
GRID example:grid.5117.2 => https://grid.ac/institutes/grid.5117.2
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34FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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A1. (Meta)data are retrievable by their identifier using a standardisedcommunications protocol
A1.1 The protocol is open, free, and universally implementable
A1.2 The protocol allows for an authentication and authorisation procedure, where necessary
A2. Metadata are accessible, even when the data are no longer available
35FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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36FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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37FAIRThe Magnifying glass, Tap, Gears set, Recycle sig, Storage, Infinity, Discussion, Shield, and Man User icons made by Freepik from www.flaticon.com are licensed by CC 3.0 BY. All other icons made by ARDC. Entire FAIR resources graphic is licensed under a Creative Commons Attribution 4.0 International License
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REASONS NOT TO PUBLISH
Confidentiality
Patent filing
Sensitive data
Licensed material
Uncertainty
adhere
wait
alter or restrict
seperate
ask
FAIR is still possible
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STEPWISE APPROACH TOWARDS MORE FAIR’ness
Investigate - find any requirements, expectations, good practice …
Invest - any changes needed in your current setup
Implement - go do FAIR
Iterate - follow up as reality overtakes the plan
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10.5281/zenodo.2248200
howtofair.dk