eulerian movement models example grid point model: an advection-diffusion-reaction model for the...

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Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data, with application to skipjack tuna (Katsuwonus pelamis). Sibert, J, J. Hampton, D. Fournier, and P. Bills (1999). CJFAS. 56: 925-938 Example grid line (block transfer) model: Modeling effects of FADs and islands on movement of skipjack tuna (Katsuwonus pelamis): estimating parameters from tagging data. Kleiber, P. and J. Hampton. 1994. CJFAS. 51:2642- 2653.

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Diffusion terms Advection terms Grid points Continuous form: Discrete form: Reaction termParametersAlternating direction, implicit time steps

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Page 1: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Eulerian Movement Models

• Example grid point model:An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data, with application to skipjack tuna (Katsuwonus pelamis). Sibert, J, J. Hampton, D. Fournier, and P. Bills (1999). CJFAS. 56: 925-938

• Example grid line (block transfer) model:Modeling effects of FADs and islands on movement of skipjack tuna (Katsuwonus pelamis): estimating parameters from tagging data. Kleiber, P. and J. Hampton. 1994. CJFAS. 51:2642-2653.

Page 2: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Estimating Skipjack Movement Parameters

The Data: ~90k releases and ~5k recaptures by pole-and-line and purse seine fishing fleets

Grid point model

The Universe:

Page 3: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Diffusion terms Advection terms

Grid points

Continuous form:

Discrete form:

Reaction term Parameters Alternating direction, implicit time steps

Page 4: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Movement parameter estimates

Observation model Poisson likelihood

Page 5: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Model Performance

Page 6: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Solomon Islands

Modeling effects of FADs and Islands on Skipjack Movement

• Many FADs

• Two fleets

• 7730 tag releases

• 914 returns

• 1/2 degree square grid

Grid line model

Page 7: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

1, jiN

jiN ,1

1, jiN

jiN ,1

jiN ,

1, jim

jim ,

jim ,

jim ,1

jim ,

1, jim

jim ,1

jim ,

Movement by block transfer

transfer coefficients:

Page 8: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

FAD effect

FAD

fact

or

no. FADs

Island effects

ba

Model Parameters

Page 9: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

ADI -- Alternating Direction, Implicit time steps

Index time differently in alternating steps

step A: step B:

Example: step A (NS implicit). Collect ) terms on the left(i.e.i-1,j

i,j

i+1,j

Page 10: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

add neighboring equations and arrange

ADI -- alternating direction, implicit time steps

i-1,j

i,j

i+1,j

Page 11: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

makes tri-diagonal system

ADI -- alternating direction, implicit time steps

i-1,j

i,j

i+1,j

Page 12: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Objective function

Two alternatives:

• tag release sets combined

single model run includes all sets

Poisson likelihood

• individual tag release sets

separate model run for each set

Multinomial likelihood

Page 13: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Model Performance

Months at large Months at large

Ret

urns

per

mon

th

Mea

n di

stan

ce (n

m)

Return rate Mean distance moved

Page 14: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Results

• D = 3.2 nm2/mo

• FF = 0.36

• M = 0.15 mo-1

≈ 10 nm

radius of FAD actionparameter estimates

0.49

1.3 FADs

Page 15: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,
Page 16: Eulerian Movement Models Example grid point model: An advection-diffusion-reaction model for the estimation of fish movement parameters from tagging data,

Diffusion bias