dna technology & biotechnology
TRANSCRIPT
DNA Technology & Biotechnology
DNA Technology develops applications based on basic understanding of the components of molecular genetics
- DNA replication- Transcription- Translation- Control systems regulating all these
processes
Gene cloning aims at making a large number of copies of a particular piece of DNA:- within a living organism (in vivo)- in a test tube (in vitro)
• Some basic tools of DNA technology
- Genomic DNA- Vectors as shuttles for genes between
organisms: Plasmids or viruses- Enzymes to manipulate DNA: ligase,
DNA polymerase, & Restriction enzymes- Gel electrophoresis
Plasmids• Extrachromosomal circular DNA • Found in most bacteria• Multiply independently of bacterial chromosome• Carry useful but non-essential genes, extend the biochemical capabilities of bacteria (antibiotic resistance genes)
Biotechnology uses DNA technology to produce useful products
Vectors: - Cloning vectors- no promoter- Expression vectors- with promoter to produce the desired proteins
Living cells:- Bacteria- Yeast- Several eukaryotic cells
Restriction enzymes http://highered.mcgraw-
hill.com/sites/0072437316/student_view0/chapter16/animations.html#
Gel electrophoresishttp://www.lewport.wnyric.org/jwanamaker/a
nimations/Chrom%26Elpho.html
• Restriction Fragment length Polymorphisms (RFLPs)
http://highered.mcgraw-hill.com/sites/0072437316/student_view0/chapter16/animations.html#
DNA Fingerprinting
• Isolation of DNA• Cutting, sizing, and sorting DNA. Special
enzymes called restriction enzymes• Producing a DNA profile of fragments that
appear as bands (using many alternativetechniques..)
Practical Applications of DNAFingerprinting
• Paternity and Maternity• Criminal Identification
and Forensics• Personal Identification
Practical Applications of DNAFingerprinting
“Forensic Biotechnology Whodunit?” by Jenny Shaw, Vanessa Petty, Theresa Brown, and Sarah Mathiason
Practical Applications of DNAFingerprinting
DNA Technology & Biotechnology
Background Information
• Definitions of DNA technology, gene cloning (in vivo & in vitro), genetic engineering & biotechnology
• Basic tools of biotechnology: DNA isolation, plasmids, restriction enzymes, DNA gel electrophoresis, transformation
• Gene cloning versus protein expression vectors
Basic Lab Skills
• Plasmid components & map• Use of micropipettor• Setting-up restriction enzyme
digests of a plasmid• Pouring agarose gels-• Preparing digestion for gel
loading• Use of molecular weight
markers and running DNA electrophoresis gels
• Analysis of results
Background InformationPlasmids
• Source, composition & architecture• Genes found on plasmids• Functional DNA sequences of
plasmids: o origin of replicationo selectable marker- antibiotic
resistance gene of interesto Gene(s) to be clonedo Control elements for gene
expression
• Plasmid map
Restriction Enzymes• Where are they naturally found?• Biological function• Enzymatic activity- catalysis of
sequence-specific cutting of DNA
• Staggered cutting-sticky ends• Blunt cutting-no sticky ends
Plasmid Maps with Restriction Enzyme sites• Size of plasmid• Position of restriction enzymes sites• Size of fragments when cut and genes they carry
DNA Gel ElectrophoresisBackground Information
• Agarose gels composition• Ethidium bromide• Negative charge of DNA • Direction of migration during
electrophoresis• Effect of size of linear DNA on its
migration• Molecular weight size marker• Gel- loading Dye (glycerol and
tracking dye) • Migration of non-linear DNA
fragments: super-coiled and relaxed circles
• Size determination of linear fragments
Basic Lab Skills
• Plasmid components & map• Use of micropipettor• Setting-up restriction enzyme
digests of a plasmid• Pouring agarose gels• Running gel electrophoresis• Results and Analysis
DNA Gel Electrophoresis Results & Analysis
Background Information & Basic Lab Skills
• 1 kb plus ladder- fragment sizes
• Migration of super-coiled and relaxed circles of plasmids
• Comparison of pattern of fragments for uncut and cut plasmid (BamHI-HindIII)
Questions
x
x
1 kb plus Ladder
Transformation Background
• Host cell• Cloning only vectors and expression vectors
Origin of replicationPromoters-
genes always expressed- promoter open for RNA polymerase bindinggenes with controlled expression- RNA polymerase binding under certain conditions
• Gene expression in bacteriaOperons Transcription control elements
Transformation LabBackground Information
• Host cell & plasmid (rpARA)• Expression of ampr gene-
selectable marker• Expression of the RFP (tomato
gene)• Natural competence- ability to take
up naked DNA from surrounding• Induced competence-CaCl2
treatment• Heat shock• Recovery• Plating & growing of bacterial cells
Basic Lab Skills
• Understanding of experimental set-up
• Follow written instruction of the Transformation protocol
• Answer Questions• Results and analysis
The Arabinose Operon
RFP (tomato)
PCRBackground Information
• Genomic DNA and cell lysis• Components of lysis mixture• Review DNA replication in vivo • DNA replication in vitro• Compare in vivo & in vitro DNA
synthesis• PCR
• Steps • Reaction mixture components
• Human genomic DNA to be amplified
Basic Lab Skills
• Genomic DNA preparation• Setting-up a PCR reaction
• Analysis using DNA Gel Electrophoresis
Compare and contrast DNA Replication in vivo
PCR-DNA Amplification in vitro
DNA Replication
• InitiationStrand Separation by helicasePrimer synthesis by primase
• ElongationExtension and polymerization of nucleotides by DNA polymerase using dNTPs: dATP, dTTP, dCTP, and dGTP
• TerminationLeading strand- End of template strandLagging strand- Replace RNA primer with DNA strand & fill-in gaps with DNA ligase
Comparison of In vivo and In vitro reactions
In vivo In vitro
Strand separation –
Priming –
Elongation –
Preparation of genomic DNA
• Lyse or break cells by disrupting cell membranes using a detergent
• Digest with a protease to release naked DNA
• Separate DNA from digested proteins
PCR: polymerase Chain ReactionDNA amplification in a test tube
http://www.sumanasinc.com/webcontent/anisamples/molecularbiology/pcr.html
PCR animation Dolan learning Center• http://www.dnalc.org/
• http://highered.mcgraw-hill.com/sites/0072437316/student_view0/chapter16/animations.html#
Polymerase Chain Reaction (PCR)http://www.biology.arizona.edu/
• cDNAhttp://highered.mcgraw-
hill.com/sites/0072437316/student_view0/chapter16/animations.html#
• Plasmid cloninghttp://www.sumanasinc.com/webcontent/animations/content/plasmidcloning.html
• Steps of gene cloning http://highered.mcgraw-hill.com/sites/0072437316/student_view0/chapter16/animations.html#
Plasmid Cloning
Recombinant DNA Technology
• http://present.smith.udel.edu/biotech/rDNA.html
Plasmid cloning and transformation• http://www.sumanasinc.com/webcontent/a
nisamples/molecularbiology/plasmidcloning_fla.html