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A Digital Pathology Solution for Immunohistochemistry

Digital IHC User’s Guide

ii Digital IHC User’s Guide

Copyright © 2007‐2009 Aperio Technologies, Inc. Part Number/Revision: MAN‐0099, Revision B

Date: September 4, 2009 This document applies to software versions Release 10.1 and later.

All rights reserved. This document may not be copied in whole or in part or reproduced in any other media without the express written permission of Aperio Technologies, Inc. Please note that under copyright law, copying includes translation into another language.

User Resources For the latest information on Aperio Technologies products and services, please visit the Aperio Technologies website at: http://www.aperio.com.

Disclaimers Use normal care in maintaining and using the Spectrum servers. Interrupting network connections or turning off the Spectrum and DSR servers while they are processing data (such as when they are analyzing digital slides or generating an audit report) can result in data loss.

This manual is not a substitute for the detailed operator training provided by Aperio Technologies, Inc., or for other advanced instruction. Aperio Technologies Field Representatives should be contacted immediately for assistance in the event of any instrument malfunction. Installation of hardware should only be performed by a certified Aperio Technologies Service Engineer.

ImageServer is intended for use with the SVS file format (the native format for digital slides created by scanning glass slides with the ScanScope scanner). Educators will use Aperio software to view and modify digital slides in Composite WebSlide (CWS) format.

Aperio products are FDA cleared for specific clinical applications, and are intended for research use for other applications. For clearance updates, visit www.aperio.com

Trademarks and Patents ScanScope is a registered trademark and ImageServer, TMALab, ImageScope, and Spectrum are trademarks of Aperio Technologies, Inc. All other trade names and trademarks are the property of their respective holders.

Aperio products are protected by U.S. Patents: 6,711,283; 6,917,696; 7,035,478; 7,116,440; 7,428,324; 7,457,446; 7,463,761; 7,502,519; 7,518,652; and licensed under one or more of the following U.S. Patents: 6,101,265; 6,272,235; 6,522,774; 6,775,402; 6,396,941; 6,674,881; 6,226,392; 6,404,906; 6,674,884; and 6,466,690.

Contact Information Headquarters Europe Office Asia Office Aperio Technologies, Inc. 1360 Park Center Drive Vista, CA 92081 United States

Aperio UK Ltd The Vineyard Axbridge Somerset BS26 2AN UK

Aperio Technologies, KK UZ Building 5F 3-3-17, Surugadai Kanda, Chiyoda-ku Tokyo, Japan 101-0062

United States of America Tel: 866-478-4111 (toll free) Fax: 760-539-1116 Customer Service Tel: 866-478-4111 (toll free) Technical Support Tel: 866-478-3999 (toll free) Email Email: [email protected] Europe Tel: +44 (0) 1934 733679 Fax: +44(0) 1934 733660 Customer Service & Technical Support Tel: +44 (0) 1934 733679 Email Email: [email protected] Asia Tel: +81-3-3259-5255 Fax: +81-3-3259-5256 Customer Service Email: [email protected] Technical Support Email: [email protected]

Contents

CHAPTER 1 -OVERVIEW .............................................................................. 1 The Immunohistochemistry (IHC) Workflow ......................................................1 Who This Guide Is Intended For.............................................................................4 The Digital IHC Solution..........................................................................................5 More Information .......................................................................................................5 Meeting Regulatory Requirements .........................................................................6

Patient Data Confidentiality ..................................................................................6

CHAPTER 2 -INTENDED USE ......................................................................... 7 In‐Vitro Diagnostic Use.............................................................................................7 Research Use Only .....................................................................................................7

CHAPTER 3 - SLIDE PREPARATION.................................................................. 9 Tissue Preparation......................................................................................................9 Mechanics ....................................................................................................................9 Staining ......................................................................................................................10

CHAPTER 4 - SCANNING ........................................................................... 11 Required Training ....................................................................................................11 Imaging System ........................................................................................................11 Calibration and Calibration Verification.............................................................11 Compression..............................................................................................................12 Sharpening.................................................................................................................12 Predefined Parameter Set for Scanning IHC Slides...........................................12 Resolution for IHC Slides.......................................................................................12 Automatic “One‐Touch” Scanning .......................................................................13 Manual Scanning......................................................................................................14

CHAPTER 5 - DATA ENTRY ........................................................................ 15

CHAPTER 6 - READING CASES STEP-BY-STEP ................................................. 17 Required Training ....................................................................................................17

Reading Digital Slides on a Computer Monitor ...............................................17 Required Hardware and Software.........................................................................18 Personal Setup...........................................................................................................18

Select Your Spectrum Start Page.........................................................................18 Set ImageScope Viewing Preferences.................................................................20 Set Report Image Preferences..............................................................................21 Set up Viewing Separate Stains (Optional) .......................................................22

Instant Access, Anytime, Anywhere .....................................................................23 Case Management ....................................................................................................23 View all Case, Specimen and Slide Information................................................24 Reading Slides on a Computer Monitor...............................................................25

Open........................................................................................................................25

Digital IHC User’s Guide iii

Contents

iv Digital IHC User’s Guide

Navigate .................................................................................................................26 Annotate Tumor Regions on H&E Slides (Optional).......................................29 View H&E and IHC Slides Side‐by‐Side (Optional) ........................................30 Use IQ to View Separate Stains (Optional)........................................................31 Run Image Analysis..............................................................................................33 HER2...................................................................................................................37 ER/PR..................................................................................................................38

Select Report Image ..............................................................................................41 Close .......................................................................................................................41

Automatic Data Flow from Analysis to Reports.................................................42 Generate Reports ......................................................................................................43

Easy Data Entry using Canned Comments .......................................................43 Automatic Report Generation.............................................................................44 Amendments and Corrections ............................................................................47

Finish the Case..........................................................................................................48

INDEX...................................................................................................49

1 Overview

Aperio provides a complete Digital Pathology Solution for Immunohistochemistry (IHC)—Digital IHC™—that combines scanning, management, viewing and analysis of slides with reading IHC slides on a computer monitor, quantitative IHC image analysis* and professional reports, all integrated into an efficient clinical workflow.

This chapter provides an overview of Aperio’s Digital IHC solution and its documentation.

The Immunohistochemistry (IHC) Workflow A lab receives a specimen from a biopsy and prepares a block from which an H&E (Hematoxylin and Eosin) slide is prepared. The typical IHC (Immunohistochemistry) workflow starts with the diagnosis of cancer by a pathologist reviewing the H&E slide.

Once the pathologist has determined that a patient has cancer, he/she orders an IHC panel. An IHC panel consists of consecutively cut slides from the same specimen block that are then stained with different IHC stains. A typical IHC panel for breast cancer includes the following IHC stains: HER2 (Human Epidermal growth factor Receptor 2), ER (Estrogen Receptor) and PR (Progesterone Receptor). The pathologist then reads the IHC slides and provides a (semi‐)quantitative assessment of the protein expressions. A report is generated for the oncologist. IHC quantification is used to determine the appropriate treatment options for the patient.

HER2 is a membrane stain. The pathologist assesses the intensity and completeness of the membrane staining of the tumor cells and determines a score of 0, 1+, 2+ or 3+ for the slide. HER2 is used specifically to assess Herceptin® (Trastuzumab) as a treatment option and to determine the aggressiveness of breast tumors.

ER and PR are nuclear stains from which the pathologist assesses the staining intensity of the nuclei of the tumor cells and determines the percentage of positive stained nuclei as a percentage between 0 to 100% and the average staining intensity of the positive nuclei as a score of 0, 1+, 2+ or 3+. Different labs use different scoring schemes for the nuclear stains. For example, some labs use only the percentage of positive nuclei as a score and use different cut‐off thresholds of 1%, 5% or 10% for the interpretation; other labs use the percentage of positive nuclei and the average staining intensity of the positive nuclei to calculate a combined score like the Allred Score.

Digital IHC User’s Guide 1

Chapter 1 – Overview

2 Digital IHC User’s Guide

* Aperio’s image analysis algorithms are FDA cleared for specific clinical applications, and are intended for research use for other application.

Chapter 1 - Overview

Here is an overview of the traditional clinical workflow. We highlight in blue where our Digital IHC Solution affects the traditional clinical workflow. Aperio’s digital pathology system provides easy access to all case, specimen and slide information from the current and all previous biopsies, including the gross images, H&E slides, IHC slides, and controls. Our Digital IHC solution provides a new all‐digital workflow for IHC, from glass slides to reports.



Who This Guide Is Intended For Th uide is a reference document that covers all aspects of using Aperio’s Di l IHC solution. Different steps of your IHC workflow may involve different people with different skills and responsibilities. Therefore, the chapters in guide are organized by function so that a particular reader can go directly to section of interest to him or her:

is ggita

this the

Functional Area Responsible Person Where to Find Information

Overview All readers Chapter 1, “Overview”

Compliance Medical Director Chapter 2, “Intended Use”

Ensfor

uring that your glass slides are optimized Digital IHC

Lab Manager Chapter 3, “Slide Preparation”

Perfdata

orming high quality slide scans and enter

Lab Assistant or Technician (ScanScope Operator)

Chapter 4, “Scanning”

Chapter 5, “Data Entry”

Stepcasekno

-by step instructions on how to read a —everything the pathologist needs to w to use the system

Pathologists Chapter 6, “Reading Cases Step-by-Step”

In ition, several additional documents are intended for personnel responsible for ting up and administering Digital IHC: add set

Functional Area Responsible Person Where to Find Information

Set work

up and configure Spectrum for your IHC flow

Administrator Digital IHC Guide to Spectrum Setup

Addinst

itional application description, set up ructions and performance specifications.

Administrator Pathologists

Medical Director

Digital IHC Application Guides

Breast/HER2 Digital Read

Breast/PR Digital Read

Breast/HER2/Dako Image Analysis

Breast/ER/Dako Image Analysis

Breast/PR/Dako Image Analysis

Membrane Image Analysis

Nuclear Image Analysis


Chapter 1 - Overview

The illustration below shows a quick summary ofDigital IHC workflow and refers to the correspond

the basic steps of the Aperio ing chapters in this document.

Slide Scanning

Chapter 4

Slide Preparation

Chapter 3

Annotate tumor regions on H&E slides(op

Chap

tional)

ter 6

Read IHC Cases- Read Slides on a Computer Monitor

- Image Analysis

Chapter 6

Generate ReportData Entry

Chapter 5 Chapter 6

istLab Assistant or T

Pathol Pathologechnician

ogi

(ScanScope Operator)

st

ThAp based on several compone

ScanScope glass slide scanner

Image Analysis

More Information For more details on your ScanScope scanner, the Spectrum digitalinformation management system, the ImageScope slide viewer,Aperio image analysis algorithms, please see:

The user’s guide for your ScanScope instrument.

Spectrum/SpectrumPlus Operator’s Guide.

Spectrum/Spectrum Plus Administrator’s Guide.

Digital IHC Guide to Spectrum Setup

ImageScope User’s Guide.

IQ Image Quality User’s Guide

Spectrum Plus Reporting User’s Guide

e Digital IHC Solution erio’s complete Digital IHC solution is nts:

Spectrum Plus

Barcode

LIS Integration

IHC

Reporting

pathology and running




Meeting Regulatory Requirements For more detailed information on the Compliance Module, please refer to the Spectrum/Spectrum Plus Administrator’s Guide.

Spectrum Plus contains several features that assist your organization in complying with regulatory requirements such as FDA 21 CFR Part 11, HIPAA, and GLP. The optional Spectrum Compliance Module contains additional features that address specific regulatory requirements.

Patient Data Confidentiality Spectrum provides a full security system that ensures that users can only access data they are authorized to see, thus protecting patient data from unauthorized access.

Digital slides and related meta‐data reside in the Spectrum database. Spectrum uses the administrator/user structure that restricts security‐sensitive actions to an authorized administrator. The administrator can:

s must log into Spectrum with their authenticated before they can access

access to specific data.

permissions to grant them full access, read‐only access, to the defined data groups.

that limit the commands they can perform and data

Set up users with passwords. Userusername and password and berestricted data.

Set up data groups that restrict

Set users’ accessor no access

Assign users rolesthey can access.

2 se

is intended to be used with

r In‐Vitro Diagnostic (IVD)

al Read

Analysis

Research Use Only All other applications are for Research Use Only (RUO). Additional documentation is provided for the following applications.

Membrane Image Analysis

Nuclear Image Analysis

Intended U

Aperio’s Digital IHC solutiondifferent applications, some FDA cleared for In-Vitro Diagnostic (IVD) use and all others for Research Use Only (RUO).

In-Vitro Diagnostic Use The following IHC applications are FDA cleared fouse. For specific information on those applications, refer to the application guides.

Breast/HER2 Digit

Breast/PR Digital Read

Breast/HER2/Dako Image Analysis

Breast/ER/Dako Image Analysis

Breast/PR/Dako Image


Chapter 2 – Intended Use


Caution: Federal (U.S.) law restricts this device to sale by or on the order of an appropriately licensed healthcare practitioner.

IMPORTANT

If the ScanScope is used in any manner not specified in this documentation, the protection provided by the equipment may be impaired.

WARNING: This equipment generates, uses and can radiate radio frequency energy. If not installed and used in accordance with the instructions in this manual it may cause interference to radio communications. It has been tested and found to comply with the limits for a Class A computing device (pursuant to Subpart B of Part 15 FCC Rules), which are designed to provide reasonable protection against such interference when operated in a commercial environment. Operation of this equipment in a residential area is likely to cause interference, in which case you, at your own expense, will be required to take whatever measures may be required to correct the interference.

3 Slid

Slide preparation has a considerable influence on how well or

gital

ides!

o is responsible for the slide preparation.

e preparation is important for scan quality. Folds in the tissue and tissue t in blurry images. Problems with blurry of a new slide.

for its scan quality and ease of d good condition—no air pockets

under cover slip, no dirt, no fingerprints, no markings, no writing, no extra chips, no scratches, no overhanging cover slip, etc.

nce from the tissue to

on the slide.

e Preparation

slides can be scanned. Optimizing the slide preparation fscanning is a good idea to get the most out of your dipathology system. Make sure to control the quality of yourglass sl

This chapter is for the lab manager wh

Tissue Preparation The tissusections that are too thick will resulslides may require the preparation

Mechanics The mechanics of the slide are important scanning. The slides should be in clean an

adhesive, no broken slides, no

The tissue ideally should be located in the middle of the slide a distaedges of the slide, the label and any other markings. It is helpful for thebe placed consistently in the same location and orientation

Make sure there is no glue around the edges of a slide that would cause it to stick or catch in the ScanScope stage area.

Keep the glue attaching the cover slip to a minimum. Excess glue makes it hard for the tissue finder to distinguish between actual tissue and the glue. If a focus point lands on the glue, slide focus will not be accurate.

Some of the mechanical problems of a slide can be resolved by cleaning the slide with a cotton rag (don’t use chemical cleaners) or trimming the sides with a razor blade. Permanent problems with a slide may require the preparation of a new slide.


Chapter 3 – Slide Preparation


Staining Reproducibility of the IHC stains is important for consistent and accurate

sure that the variations of the staining process are controlled and scoring. Make eliminated to the greatest extent possible. Employ appropriate morphological studies and controls as specified in the reagent manufacturers’ instructions.

Glass Slide Quality Control

It is the responsibility of the lab to verify the quality of the tissue preparation, mechanics of a slide and the staining.

the

4 Scanning

The imaging system and its calibration as well as the scanning parameters are critical to transforming a glass slide into a high quality digital slide. Aperio’s ScanScope instruments a

For more detailed information on how to scan slides, please refer to the ScanScope User’s Guide.

llow slides to be scanned automatically. Make sure to control the quality of the digital slides!

This chapter is for the lab assistant or technician who scans the glass slides on the

properly for the Digital IHC self study of the ScanScope User’s Guide for information on the ScanScope instrument and this chapter for specific information

Calibration and Calibration Verification Color and intensity reproducibility are important for the consistent and accurate scoring of IHC slides. The ScanScope systems provide a high degree of color and intensity reproducibility scan after scan and also from one ScanScope to another. Professional color management using ICC (International Color nsortium)

d.

ifferent causes, including problems with the light source, camera gains,

ScanScope.

Required Training A ScanScope operator should be able to scan slidesapplications aftergeneral use of theand requirements for the Digital IHC applications.

Imaging System The most important property of any imaging system is its image quality. Aperio’s ScanScope systems are based on Aperio’s patented line‐scanning technology which provides superior high‐quality, high‐resolution digital slides.

Coprofiles ensures that you always see the same “true” color calibrated image of a slide wherever and whenever you view it.

The ScanScope automatically calibrates each slide when it is scanned. The calibration at scan time is optimal, as it takes into account the characteristics of each slide and the system at the exact moment of the scan and not at the momentin time when a daily or factory calibration was performe

The ScanScope automatically assures proper operation of the ScanScope for each scan by performing a test of each calibration that determines if there is a problem. In case of a problem, the scan is aborted. A calibration problem can have d


Chapter 4 – Scanning

macro camera offsets, location of the slide on the tray, optical misalignment, etc.

Compression

JPEG or JPEG2000 image compression types and quality factors between 10 and 90.

The Digital IHC applications require that glass slides be scanned with JPEG2000 compression (type 3 as defined in the ScanScope Console) with quality factor 70.

Sharpening Aperio’s ScanScopes provide the capability of applying a sharpening filter while the slides are scanned.

CAUTION: Using image filters may affect analysis of the image. While sharpening filters tend to provide a more pleasing image to the human eye, they may compromise analysis performed by analysis algorithms because the image has been altered.

The Digital IHC applications require that no sharpening filter is used.

Predefined Parameter Set for Scanning IHC Slides It is important that all IHC slides are scanned with the required parameter settings.

Aperio provides the required parameter settings for IHC slides in the ScanScope Controller XML file, called the “IHC” parameter set.

The Digital IHC applications require that the “IHC” parameter set (or equivalent) be used for scanning IHC slides.

Resolution for IHC Slides Pathologists using a standard microscope typically view IHC slides with a 20x objective which is required to view all relevant cell features for their IHC scoring. Aperio ScanScopes provide slide scanning at 20x and 40x.

Although scanning at 40x provides more detail, it also requires unnecessarily longer scan times and larger file sizes.

The Digital IHC applications require that IHC slides be scanned at 20x.

please see the troubleshooting section in the ScanScope User’s Guide for moredetails.

The Spectrum administrator can print calibration reports for any range of dates.

For information on printing calibration reports, see the Spectrum/Spectrum Plus Administrator’s Guide.

Because of the large size of whole‐slide images, Digital Pathology applications often use lossy data compression technologies such as JPEG and JPEG2000. Aperio’s ScanScopes allow users to select


Chapter 5 – Data Entry

Automatic “One-Touch” Scanning Aperio’s ScanScopes can scan slides automatically using

Digital Slide Quality Control

“one‐touch” operation.

Ultimately it is up to the pathologist to look at digital slides to verify they are of sufficient quality to perform his/her task. In addition, ScanScope operators

and ire tissue

The ScanScopes provide a Macro Image, a low resolution image of the entire

should verify digital slide quality after scanning.

The quality criteria that are important for the IHC image analysis systemthat should be verified by the ScanScope operators are: (1) that the entsample has been scanned and (2) that the tissue is in focus.

Entire Tissue Sample Scanned

slide that also provides a green outline of the scanned area.

The Digital IHC applications require that the ScanScope operators look at the Macro Images of all the digital IHC slides and verify that the entire tissue sample

e rt, fingerprints, , but that the scan

was scanned.

Tissue in Focus

The ScanScopes provide a quality factor for each scan from 0 (worst) to 100 (best). Note that a low quality factor can be caused by poor slide preparation, likfolds, thick tissue sections, air pockets under the cover slip, dimarkings, writing, extra adhesive, broken slide, scratches, etc.of the tissue still might be good—therefore the operator should not rely on the quality factor alone to determine the quality of a scan; he/she typically uses the quality factor as a triage tool to determine which slides he/she wants to review.

ScanScope operators should use the quality factor to triage slides for manual review and then review those slides by panning through the entire slide and verifying that the tissue sample is in focus.

The ScanScope operator should re‐scan a slide if the entire tissue sample has not been scanned or if a tissue area is out of focus.


Chapter 4 – Scanning


Manual Scanning In some cases, the quality of a digital slide can be improved by manually scanning the slide. In other cases, it might be necessary to prepare a new slide.

position the calibration area, place focus points, and focus the focus points

ick tissue section, air pocket under

to overcome focus problems are: place the focus points on the the artifacts; place only a small number of focus points when

the auto focus fails (for example in thick tissue).

Manual scanning allows the ScanScope operator to designate the scan area,

manually.

The problem that the entire tissue sample has not been scanned can be resolvedby designating the scan area manually and re‐scanning.

To resolve the problem that a tissue area is out of focus, it helps to understand the cause of the problem; it might be a fold, ththe cover slip, dirt, fingerprint, marking, writing, extra adhesive, broken slide, scratch, etc. Some of the mechanical problems of a slide can be resolved by cleaning the slide with a cotton rag or trimming the sides with a razor blade. General guidelinestissue and exclude the tissue is flat; place more focus points to adjust to a shaped tissue area; and use manual focus when

5

using barcodes

is scanned by a ScanScope scanner, a licensed

By integrating Spectrum with your Laboratory Information System, you can automatically transfer data between Spectrum and your LIS. Depending on how the integration is implemented, data from a slide’s barcode that automatically goes into the Spectrum database can also automatically go into your LIS, or new or modified data in your LIS can automatically be copied into Spectrum. The integration requires custom work and your participation in deciding what

Data Entry

Data entry can be completely automated For more detailed and by integrating to your Laboratory Information System

(LIS). information on how to automate data entry or how to enter data manually, please refer to the Spectrum/Spectrum Plus Operator’s Guide.

When a glass microscope slide barcode on the slide label can be decoded to populate data fields in SpectrumPlus. Decoding barcodes requires some custom work, so contact Aperio Professional Services for assistance.

information you want to share between the systems—contact Aperio Professional Services for assistance.


Chapter 5 – Data Entry


6 Reading Cases Ste

is, and professional reports. This chapter provides step-by-step instructions on how a pathologist reads a case

C with an all‐digital solution. Pathologists

ation

Reading Digital Slides on a Computer Monitor As with any change in diagnostic methodology, and especially one that relies on visual interpretation of complex images, a transition from conventional microscopy to digital microscopy presents the possibility of unintended but systematic change in diagnostic performance. Users should be aware that their IHC categorizations may be biased when switching from conventional to digital microscopy and as such, training beyond self study should be undertaken as needed to assure concordance before clinical adoption of the device. The laboratory is responsible for ensuring that concordance goals are reached and maintained.

p-by-Step

Aperio provides a complete solution for IHC that includes reading slides on a computer monitor, quantitative image analys

using Aperio’s Digital IHC solution.

Aperio provides a new approach to IHcan now use quantitative image analysis conveniently with a click of a buttonwhile reading slides on a computer monitor.

Required Training A pathologist should be able to use Aperio’s Digital IHC solution and its applications after self study of this chapter and after referring to the informin the application guides.


Chapter 6 – Reading Cases Step-by-Step



Required Hardware and Software A good monitor is a recommended investment for any pathologist who is viewing digital slides. Our minimum requirements for a computer monitor used for Digital IHC are the following:

Display Type: Any high-quality LCD

Screen Resolution: 1680(h) x 1050(v) pixels

Screen Size: 24”

Color Depth: 24 bit

Brightness: 300 cd/m2 minimum

Contrast Ratio: 500:1 minimum

Other hardware and software you need:

Windows workstation with an Internet connection.

Internet browser (Internet Explorer, Firefox, or equivalent).

The address (URL) of the Spectrum server so that you can log into Spectrum. (See the Spectrum administrator or your IT group for this address.)

Aperio’s ImageScope digital slide viewer. (If ImageScope has not been installed on your workstation, see the Spectrum administrator for assistance.) The version of Spectrum installed must be compatible with the version of Spectrum.

Adobe Acrobat Reader (free download from www.adobe.com).

Personal Setup Your Spectrum administrator sets up Spectrum for your institution’s Digital IHC workflow. (These setup steps are covered in the Digital IHC Guide to Spectrum Setup.)

Each pathologist may also want to do a small amount of setup, discussed below. This setup only needs to be done once.

Select Your Spectrum Start Page You can set up your Spectrum start page when you log in the first time into Spectrum (see “Instant Access, Anytime, Anywhere – Logging into Spectrum” on page 23 for details).

1. Go to the Spectrum Administrative menu and select My Settings.

2. In the User Details section, select the startup page you want to see when you log in by selecting the page from the Spectrum Start Page drop‐down list.

We provide work lists based on case statuses that you can select as your Spectrum start page. Your Spectrum administrator can set up

The set up of Spectrum for your institution’s Digital IHC workflow is discussed in details in the Digital IHC Guide to Spectrum Setup.



appropriate case statuses for your workflow. Work lists are automatically created for each case status and can be accessed via th

Pathologists may want to go directly to the cases that need their attention. In our example, cases that need the attention from pathologists have the case status Pending and you would select List Cases (Pending).

e Cases menu at the top of the Spectrum page as well as assigned as your start page.

3. Click Save to save your settings.

.



Set ImageScope Viewing Preferences You can set up your ImageScope viewing preferences the first time you open a digital slide with ImageScope (see “Opening a Digital Slide“ on page 25 for details).

1. Go to the Imag select your preferred viewing following options.

eScope View menu andoptions. We recommend you select the

2. If the Annotations window comes up in the Detailed View,

Summary to get the Annotations – Summary View that is usclick ed for the

in

t corner in ImageScope.

Digital IHC solution. You can move this window around so it is notyour way for viewing digital slides. A convenient location may be thebottom lef

Set these viewing preferences on each computer you are going to use.



Set RepYou canslide wi pe (see “Opening a Digital Slide“ on page 25 for details).

1.

ort Image Preferences set up your report image preferences the first time you open a digital th ImageSco

Go to the ImageScope Tools menu and select Options….

2. Click the Report Image tab on the Options window. You can now select

the image resolution and region size setting for the report image. Ask your Spectrum administrator which settings will work best with your report templates. For our IHC report template, we recommend that you select Full Resolution Image, Fixed Sized Report Region with a Width of 320 Pixels and a Height of 240 Pixels. Click OK to save your settings.

Set these report image preferences on each computer you are going to use.



Set up Viewing Separate Stains (Optional)

25 ).

You can set up your standard stain sets for your IHC slides the first time you open any digital slide in ImageScope (see “Opening a Digital Slide“ on pagefor details

1. Click the IQ icon on the ImageScope toolbar and select the Defaultsetting.

2. Go to the ImageScope Image menu and select Quality ….

You now see the IQ viewer toolbar.

3. Click the Details button on the IQ viewer toolbar.

4. Click the Stains Applied tab and select the stains used for your IHC slides, typically Hematoxylin and DAB.

5. To save this combination for future use, click the Manage Sets tab and type a name, like HE + DAB and click Save.

6. Click the View Only button on the IQ viewer toolbar.

7. Close the IQ viewer toolbar by clicking at the top of the window.

Create a stain set for each type of IHC digital slide you are going to view on each computer you are going to use to view digital slides.

From now on, when using IQ to view separate stains, you will be able to easily select the appropriate stain set for the digital slide you are viewing.



Instant Access, Anytime, Anywhere

RL), and for your username and password.

1. Open Microsoft Internet Explorer (or any other standard web viewer like Firefox) and enter the Spectrum web ress. Spectrum displays the

All digital pathology data is accessed via Aperio’s web‐based information management system, Spectrum. You can log into Spectrum—securely, anytime,anywhere—and read your cases as soon as they have been scanned.

Ask your Spectrum administrator for the Spectrum web address (U

addlogin page. (You may want to bookmark this web page for convenience.)

2. Log into Spectrum by entering your username and password and clicking the User Login button. You may be asked to change the password before continuing, depending on the security settings your Spectrum administrator has chosen for your account.

Case Management We provide work lists based on case statuses so that every user of the system can manage his work efficiently. If you have set up your start page (see “Select Your Spectrum Start Page” on page 18) to be the list of cases that need your attention, you will see this list as soon as you log in. In our example, cases that need the attention from pathologists have the case status Pending.



View all Case, Specimen and Slide Information ss

e case list, open the case to be reviewed by clicking on the open

When you open a case, all case, specimen and slide information, including groimages and controls, are conveniently at your fingertips.

3. On thdata icon for the case. The Case Details page opens for that case.



Reading Slides on a Computer Monitor g

the Case Digital Slides list to see the slides

Please refer to the Digital IHC application guides for more details (includinintended use) on the reading of IHC slides on a computer monitor.

Open On the case page, scroll down toassociated with this case.

4. To quickly open a slide in ImageScope, click on the thumbnail of the Macro image. To open multiple slides simultaneously, select the check box next to all slides you want to open and click View Images.

The slide appears in the ImageScope window.

For more detailed information on how to view slides, please refer to the ImageScope User’s Guide.



Navigate To read a slide you need to navigate through the slide in much the same way you would with a microscope. You can pan and zoom, but do not need to focus.

d

You may want to start at a low‐power of 4x or 5x that provides you with diagnostic viewing capabilities and pan through the slide to look for invasive tumor regions. When you identify an invasive tumor region, you can then go to the highest‐power and do your quantitative assessment. Then go back to low‐power and continue scanning the slide for more invasive tumor regions.

5. Click 5X on the zoom slider.

The image of the tissue is already in focus (optimum focus has been determineduring the scanning of the slide).

6. Pan through the slide by clicking on the slide, holding and moving.

7. Zoom in by double‐clicking on the invasive tumor regions.

8. Zoom out by double‐clicking again and continue panning.



Here is a short list of common zooming and panning features in ImageScope

Fit, 1x, …20x.

e enable this mode. If you accidentally click the wheel, you

ng any location of the digital slide. Go back to the previous zoom level by double‐clicking again.

Pan: Position the slide view by clicking on the rectangle (current view) in the slide thumbnail window, holding and moving to the desired position.

Move the view by clicking on the slide, holding, and moving.

Move to an adjacent view by pressing the Shift and arrow‐up, ‐down, ‐left, and ‐right keys.

(commands in italic are preferred for fast, single‐hand operation):

Zoom: Adjust zoom level by using the controls in the zoom slider—

Increase and decrease zoom by rolling the mouse wheel: toward you (zoom in) and away from you (zoom out). First, click anywhere on thdigital slide tostart a panning mode not described here—just click anywhere on the slideto return to the normal mode.

Go to maximum zoom level (highest resolution) by double‐clicki



Slide Quality Control

It is up to the pathologist to verify that the slides are of sufficient quality to perform his/her task, whether that is a manual read of the digital slide or image analysis.

Note that the quality of a slide depends on the laboratory following the qucontrol instructions recommended in the labeling of IHC assays. It is recommended that the pathologist follows the appropriate instructions in the specific IHC assay to assess the quality of the slide preparation.

The pathologist should review the quality of the scanning by evaluating tha

ality

t the and that the tissue is in focus.

The staining process can yield artifacts that need to be assessed properly by the pathologists. Typical artifacts to consider are: normal epithelium staining, heterogeneous staining, background staining, and cytoplasmic background staining as well as edge, thermal and crush artifacts. Staining artifacts should be considered carefully. In some cases, severe staining artifacts may prevent accurate IHC image analysis. Those regions should be excluded from the IHC image analysis.

IHC image analysis is sensitive to excessive cytoplasmic staining and tissue being out of focus. It is the responsibility of the pathologist to know the limitations of the algorithm and to make sure that only good quality digital slides are used for the IHC image analysis.

If slides have poor quality, it might be necessary to prepare a new slide or to re‐scan the slide.

The pathologist verifies that the entire tissue sample

entire tissue sample has been scanned

has been scanned the

The pathologist assesses the presence of any staining artifacts

and requests a re‐scan of the slide if the scan area does not includeentire tissue sample.

, in particular cytoplasmic staining, and requests the preparation of a new slide if excessive cytoplasmic staining is observed.

The pathologist assesses the focus of the digital slide and requests a re‐scan of the slide if the tissue in the tumor regions is out of focus.



Annotate Tumor Regions on H&E Slides (Optional) You typically read the H&E slides first to determine the need for an IHC Panel. You n you find them more reliably later when you are reading the IHC slide You catumor regions

9. If youin the

could an otate the invasive tumor regions on the digital H&E slides to help faster and

s. n use the annotation tools in ImageScope to mark the invasive .

want to provide any form of annotations, first select Annotation Annotations drop‐down list on the Annotations window.

click on the 10. Then Pen icon on the ImageScope toolbar and draw an e of the inoutlin vasive tumor region. Regions can be outlined anywhere

in the are not persis g tool a on. To delete any region, click the annotation on the main ImageScope window to select it and press the Delete key on your keyboard.

slide and at any zoom level. Note that the drawing toolstent—for each region to be outlined, you must select the drawingain and then outline the regi

11. You can easily navigate from one annotation to the next by clicking on

the corresponding region numbers in the Annotations window.

When you outline the tumor regions on the H&E slides, your lab could provide a service where it pre‐identifies the tumor regions on the IHC slides and pre‐runs image analysis for you based on the tumor regions you outlined.



View H&E and IHC Slides Side-by-Side (Optional) Something you cannot do on a microscope is to view multiple slides side‐by‐side.

ative

the tumor regions faster and more reliably.

see the

You know how difficult it can be to identify invasive tumor regions on a negIHC slide. Being able to view the H&E and IHC slides side‐by‐side can help you to identify

Using advanced computer technologies, multiple slides can be automatically synchronized so that when you navigate through one of the slides yousame region at the same magnification in all slides.

12. Click the smart synchronization icon on the ImageScope toolbar to automatically synchronize all open slides. (Note that this icon is similar to the manual synchronization icon, , except that it is yellow instead of white.)

If smart synchronization is not effective because of special tissue characteristics such as torn or missing tissue, then you can use manual synchronization. Set all slides to the same magnification, align them manually, and then click the manual synchronization icon .



Use IQ to View Separate Stains (Optional) IQ offers many more

With nuclear stains, like ER or PR, it may be challenging to identify faint DAB staining on the nuclei, as Hematoxylin (the background staining) and DAB colocalize on the nuclei.

Using advanced computer technologies, the stains can be properly separatedyou can look at the

features than simply viewing separate stains, such as adjusting stain colors to your preference or standards, measuring your stains, and so on—see the IQ Image Quality User’s Guide for details.

and individual stains. This way you can easily identify faint DAB

stained nuclei as well as any positive stained region on the slide (hot spots).

13. Click the IQ icon on the ImageScope toolbar to select the appropriate stain set, such as HE + DAB, from the IQ drop‐down list. Make sure to set up the stain sets for your IHC slides (see “Set up Viewing Separate Stains (Optional)” on page 22).

14. Go to the ImageScope Image menu and select Quality….

You see the IQ viewer toolbar.

15. Use the IQ viewer toolbar to view separate stain channels:

AB to see both stains at the same time:



A to see the first stain only (in this example, Hematoxylin):

B to see the second stain only (in this example, DAB)

16. Click at the top of the IQ viewer toolbar to turn off IQ.



Run Image Analysis Aperio provides a new approach to IHC with an all‐digital solution. While reading slides on a computer monitor you can now use quantitative image analysis efficiently with a simple click of a button. Image analysis classifies and

g ns

rogeneity of the tumor.

e for quantitative image analysis, the easiest way is to run analysis on the current screen. Make sure to zoom in to the highest magnification when running analysis to keep the processing time short.

17. Click Run Analysis on the Annotations window. If the Annotations View menu in ImageScope and select d N keys.

counts thousands of cells for you accurately and consistently in just seconds.

The entire slide is important for assessing the tumor and Aperio’s Digital IHC solution makes the entire digital slide available to you for image analysis.

When identifying tumor regions for analysis, make sure to properly identify invasive cancer versus carcinoma‐in‐situ and not to include regions with staininartifacts. If the staining is heterogonous, ensure that your choice of tumor regiofor analysis is representative for the hete

When you have identified an invasive tumor region you want to us

window is not shown, go to theAnnotations or press the Ctrl an

The appropriate algorithm for the analysis, identified as “(default),” is automatically selected for you. For advanced users: You may run any other analysis algorithm available to you as well, but only the results from the default algorithm will be available in Spectrum for further reporting.

Some of our algorithms provide an automatic tumor cell detection capability that identifies tumor cells (versus lymphocyte, stroma and normal cells) and only includes those tumor cells in the analysis. This capability provides robust analysis results when the analysis is run on the entire screen or on coarse tumor regions that not only include tumor cells but also lymphocyte, stroma and normal cells. Consult the Digital IHC application guides to learn more about the capabilities of the algorithms you are using.



Other al cells and you are required to identify the tumor cell‐only regions (excluding lymphocyte, stroma and normal cells) for the analysis.

17a Click on the

gorithms provide only a limited capability to identify tumor

outPen icon on the ImageScope toolbar or simply press F2

and draw an line of the invasive tumor region. Alternatively, you can use the rectangle drawing tool by clicking on the Rectangle icon or pressing F5. Regions can be outlined anywhere in the slide and at any magnification (images are always analyzed at the maximum resolution of 20x). Note that the drawing tools are not persistent—for each region to be outlined, you must select the drawing tool again and then outline the region. Note as well that if you interrupt the drawing of a region, ImageScope will close the region by connecting the end points (not visible). If this is not what you want, then you should delete the current outlined region by pressing the Delete key and starting over again with this region. Once you draw a region, a numbered button that

e Annotations window. corresponds to the region you have drawn shows up th

Note that when you want to outline regions for analysis that the appropriate algorithm name needs to be selected in the annotations window, not Annotations—Annotations are for general annotations of the slide.

The default setting for the analysis of Current Screen is automatically changed to Selected Annotation when you outline regions for analysis. You can outline as many regions as you like and then run analyses on them.

17b Click Run Analysis on the Annotations – Summary View window. If the Annotations window is not shown, go to the View menu in ImageScope and select Annotations or press the Ctrl and N keys.



You can also analyze theautomatic tumor cell dete

entire invasive tumor by using an algorithm with ction and running it on a coarse outline of the invasive

s tumor regions. Processing those large regions may take some time and a different workflow is recommended to save you time where the lab pre‐runimage analysis for you based on the tumor regions you outlined on the H&E slide.

Digital slides consist of large images and the analysis of large images requires considerable processing resources. Aperio provides server‐side processing for its image analysis so that the images are processed where they reside, thereby eliminating the need for moving the images over the network and also not using the processing resources on the pathologist’s computer. Aperio’s server‐side analysis also provides a scaleable processing architecture that allows easily adding computer resources to the server to meet expanding analysis needs to guarantee fast response times for a large number of users and allows the image analysis to keep up with slide scanning.



While analyzing, a progress bar is shown in the Annotations window. It shouldtake about 6 seconds to analyze the current screen at 20x (about 2,000 to 3,000 cells).

Oncclassificof the a .

The maaccordinmarkupconfidewithout

e the analysis is complete, a mark‐up image of the individual cell ations can be seen in the ImageScope window and the numerical results nalysis can be reviewed in the Annotations window

rk‐up image highlights the detected cells which are color‐coded g to their classification (blue = 0, yellow = 1+, orange = 2+, red = 3+). The image allows you to easily verify the analysis results and to gain nce in using this new technology. You can view the digital slide with or the mark‐up image by clicking on the eye icon (without) (withp image) in the Annotations window.

mark‐u

The analysis results provide the number of detected cells, the percentage of cells per class (0, 1+, 2+ and 3+) corresponding to the mark‐up image and the assay specific scores (e.g., HER2 score for HER2, and Percentage and Intensity Score for

r ER/PR). The analysis results are provided for each region and accumulated fothe entire slide (all regions).



HER2 The HER2 image analysis detects the membrane staining for the individual tumor cells and quantifies the intensity and completeness of the membrane staining. Tumor cells are individually classified as 0, 1+, 2+ and 3+. A tumor ceis classified 0 when there is no membrane staining, 1+ when there is only partiamembr

ll l

ane staining or weak membrane staining, 2+ when there is moderate and complete membrane staining, and 3+ when there is intense and complete membrane staining.

Based on the percentages of 0, 1+, 2+ and 3+ classified cell scores, a HER2 assay Score of 0, 1+, 2+ or 3+ is determined. The score is 3+ if more than 10% of the cells are stained at the 3+ level, 2+ if more than 10% of the cells are stained at the 2+

er

s tor

Please refer to the Digital IHC application guides for more details on the image analysis application you are using for HER2.

and higher levels, 1+ if more than 10% of the cells are stained at the 1+ and highlevel, and 0 if less than 10% of the cells are stained at the 1+ or higher levels.

As you can see, the HER2 image analysis not only provides the coarse HER2 score but also a detailed breakdown by percentages of 3+, 2+ and 1+ cells that allows you to identify border line cases easily and use our HER2 image analysireadily with the new CAP/ASCO HER2 guidelines. Your Spectrum administracan set up an automatic HER2 score calculator as part of Spectrum that uses the 30% threshold for 3+ cells as outlined in the CAP/ASCO HER2 guidelines.



ER/PR The ER/PR image analysis detects the positive nuclear staining for the individutumor cells

al and quantifies their staining intensity. Cells (Nuclei) are individually

clear classified as 0, 1+, 2+ and 3+. A nucleus is classified 0 when it has no nustaining, 1+ when it has weak nuclear staining, 2+ when it has moderate nuclear staining, and 3+ when it has intense nuclear staining.

Based on the percentages of 0, 1+, 2+ and 3+ cells, the percentage of positive stained cells as a percentage of 0 to 100% and the average staining intensity of the positive nuclei as a score of 0, 1+, 2+ or 3+ is determined.

Cytoplasmic or background staining can create problems for the correct quantization of the staining because it increases the overall staining intensity of the slide. Cytoplasmic or background staining can also create problems for image analysis algorithms because segmentation of the nuclei becomes more difficult. Slides that exhibit high cytoplasmic or background staining due to the staining process (vs. biological cause) should be caught by the laboratory’s qual control

and PR scoring is that many labs use different scoring schemes—some use the percentage of positive cells with a 1%, 5% or 10% cut‐off, some use the Allred score, and others have their own scoring scheme combining intensity and percentage to derive a meaningful score. Our ER/PR image analysis provides the percentage of positive cells and the intensity score on which all those scoring schemes are based. Your Spectrum administrator can set up an automatic score calculator as part of Spectrum that implements the scoring scheme established in your institution.

Please refer to the Digital IHC application guides for more details on the image analysis application you are using for ER/PR.

ityprocess. In any case, our ER/PR image analysis is able to deal with a certain degree of cytoplasmic or background staining. The ER/PR image analysis detectscytoplasmic staining and corrects for it in the staining intensities and in the segmentation of the nuclei.

An interesting point about ER



At this point, you can add regions and run analyses again.

new

to a region or use the arrow keys to step through them all.

The selected region is shown centered in the ImageScope window.

The IHC image analysis works incrementally, which means that as you add regions and click Run Analysis on the Annotations window, only the new regions are analyzed. Any time you click Run Analysis again, all slide results areupdated.

As you add regions, additional numbered buttons appear on the Annotations window. You can easily navigate between regions by clicking on the numberedbutton corresponding

To delete any region, click the annotation on the main ImageScope window to select it and press the Delete key on your keyboard, or select the numbered button for the region in the Annotations window and click the icon.

When you delete an analyzed region, the slide results are automatically updated.



Image Analysis Quality Control

IHC image analysis is an aid to the pathologists. It is the responsibility of the pathologists to verify the proper operation of the analysis.

It is important that the pathologists feel comfortable with the IHC image analysisbut identify when it might have failed (quality control)

. Aperio’s IHC image

analysis makes it easy for the pathologists to follow what the analysis is doing and how scores were determined. The analysis provides meaningful outputs of the different processing steps to which the pathologist can relate intuitively, the same cell features, and the same scoring scheme as used for manual scoring.

The pathologist reviews the mark‐up image for each of the tumor regions and makes sure that the analysis properly detected and classified the tumor cells.

If there are regions where the analysis did not perform properly, then those gions need to be excluded from the analysis. Deleting regions may require ing new regions to make sure that the tumor regions used for the analysis are

lyze a representative set of s properly, then the IHC image

e.

readdrepresentative for the tumor. If it is impossible to anatumor regions where the algorithm performanalysis should not be used for this particular slid



Select Report Image With a simple click of a button you can designate a representative region of the slide that will be automatically included in your report.

18. Click the Report Region Tool icon on the ImageScope toolbar and .

`

then click the area of the image that you want to appear in your report

Only one report image can be selected for a slide, and a report image only appears in a report if the report template used has the provision for using report images.

Later on you can navigate to the report image region by selecting Report Image in the Annotations window. To go back to the analysis, you need to reselect the appropriate image analysis algorithm that is marked (default) in the Annotations window.

Close Once you read the IHC slide, run image analysis and designate a report image, you need to save all annotations and close ImageScope.

19. Click the Save icon in the Annotations window.

20. Click at the top of the ImageScope window.



Automatic Data Flow from Analysis to Reports

u

Aperio automates the data flow from analysis to reports for you, providing automatic score and interpretation calculation.

It is the responsibility of the pathologist to provide the final score based on his/her assessment. If you agree with the provided scores and interpretation, yodo not need to do anything. If you disagree, just overwrite the score or interpretation results in question. Values that have been updated automatically are shown with a link icon . Overwritten values are shown with a broken link icon . Once a value has been overwritten, it is no longer updated automatically,

. making sure that data provided by the pathologists always takes precedence

Spectrum shows for each slide the Report image, the Analysis results, as well as the Score and the Interpretation results. Your Spectrum administrator can set up the slide‐specific processing for each slide, defining the appropriate image analysis algorithm and the specific score and interpretation schemes that are used in your institution. The analysis results here are the same as the slide results in the Annotations window in ImageScope. Note that only the results from the specified image analysis algorithm (default) are reported here, making sure that the right analysis always is used. When the analysis results are updated in ImageScope, the results in Spectrum are also updated at the same time. Scores can be copied over directly from the analysis results and/or a new calculated score can be defined. Our automatic score calculator can be used to create any scoring scheme you want, such as a score that follows the new CAP/ASCO guidelines for HER2, the Allred Score or for that matter any score that is based on the percentage of positive cells and the intensity score for ER/PR, or the H‐Score. The interpretation can be calculated automatically based on a score.



Generate Reports

ing

21. Select a canned comment from the drop‐down list of the slide and case comment fields. You can add any number of canned comments for a field, edit the canned comments you used, and add your own text.

Your Spectrum administrator can define the canned comments for your institution. Specific canned comments can be defined for your different slide types (e.g., Breast/H&E, HER2, ER, PR) and the case comment (see the Digital IHC Guide to Spectrum Setup).

Easy Data Entry using Canned Comments The slide and case comments can be entered easily, accurately, and quickly uscanned (pre‐defined) comments.

Once you have entered all data, you need to save it. Note that all data fields that

yellow.

e Case page.

have been changed but have not yet been saved are colored

22. Click the Save button on the top or bottom of th



Automatic Report Generation Automatically create error‐free professional reports with representative imagfrom the slides. You can now generate professional reports yourself while reviewing a case.

es

For more information on creating reports, see the Spectrum/Spectrum Plus Reporting User’s Guide.

23. Go to the Case Report section and select the appropriate report template from the drop‐down list.

24. Click Generate Report.

It is easy to create a new report template tailored to your institution’s needs. Any information in the database can be laid out in a professional report in exactly the format you desire. Ask your Spectrum administrator which report template you should use.

As you can see with our IHC HER2, ER, PR report template (next page), your customer or oncologist address with logo, your address with logo, patient information, case comment, specimen information and the scores, interpretation, comments and images of the slides are automatically pulled into a nicely laid out report. If image analysis was used on an IHC slide, this is clearly identified for your billing purposes.

Once you have reviewed the report you can use an electronic signature to sign it.

25. Click Sign.

26. Enter your Password (the password you used to log into Spectrum.) and

click Sign.



After signing, the report is automaticasecure format that cannot be edited an

lly created in Adobe Acrobat format in a d it is stored at a secure server location.

27. Go to the History section under Case Reports and click on the Report File.

This will open the report in Adobe Reader. (You must have Adobe Acrobat Reader installed on your computer to view the report.)

From thin Adobe Reader you can then print, save or email the report. wi



Amendments and Corrections Once a report has been signed, you have to amend or correct it if you need to modify it. First, make your changes and then generate the report again. Now before you can sign the report you need to specify if you want to do an Amendment or Correction by choosing from the Select Update Type drop‐down list. Then you need to sign the report again using the electronic signature.

A new report is automatically created and can be found in the History section under Case Reports.




Finish the Case When you are finished with the case, select the case status that your organizatiuses to identify

on reviewed cases.

28. Go to the Case Details section and select the new case status from the Status drop‐down list.

Your Spectrum administrator can set up appropriate case statuses for your workflow. In our example, when a final report has been generated for a case, the new case status is Approved.

Now you can go to your next case.

29. Click Next Case. Alternatively, you can go back to your work list of cases that require your attention by clicking Case List.

When you stop working, log out of Spectrum.

30. Click Log Off in the Spectrum toolbar and close the Internet browser.


Index

mark‐up image, 36 quality control, 40 results, 36

calibration, 11 canned comments, 43 data entry, 15 deleting regions, 39 Digital IHC illustration, 5 digital slide

navigating, 26 opening, 25 quality control, 13, 28 reading on computer monitor, 17,

25 ER stain, 1 FDA clearances, 7 generating reports, 44 H&E slide, 29

annotating, 29 HER2 stain, 1 IHC workflow, 1 image

compression, 12 sharpening, 12

image analysis. See analysis ImageScope

Annotations summary view, 33, 34

drawing tumor regions, 34 manual synchronization, 30 navigating regions, 39 report image preferences, 21 smart synchronization, 30 tools, 26 viewing preferences, 20

using, 31 logging in, 23 manual read, 17

mark‐up image, 36 monitor requirements, 18 navigating digital slide, 26 opening digital slide, 25 panning, 27 patient data confidentiality, 6 PR stain, 1 preparing slides, 9

mechanics, 9 staining, 10 tissue, 9

prerequisites, 18 quality control

algorithms, 40 digital slide, 13, 28 glass slide, 10

reading digital slide, 25 regulatory requirements, 6 reporting

amending a report, 47 correcting a report, 47 creating reports, 44 image preferences, 21 report image, 41 sample, 45

required training pathologist, 17 technician, 11

resolution, 12 scanning, 11

automatic, 13 calibration, 11 compression, 12 manual, 14

analysis ER/PR, 38 HER2, 37

intended use, 7 IQ, 22

setup, 22

running, 33 automatic data flow, 42bar codes, 15

manuals, 5

Index


predefined parameterrequired training, 11

set, 12

individual, 18 IQ, 22

slide preparation, 9 smart synchronization, 30

start page, 18

updating case status, 48 viewing case information, 24 zooming, 27

resolution, 12 scoring slides, 42

overriding automatic, 42

Spectrum logging in, 23

setup ImageScope, 20, 21

updating analyses, 39

Index


Digital IHC User’s Guide

MAN-0099, Revision B

digital ihc user's guide - mcgill university€¦ · use normal care in maintaining and using...

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