detection and significance of pd-1.3 snp (rs11568821) and ... · detection and significance of...
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Detection and significance of PD-1.3 SNP (rs11568821) and IL28B SNP (rs12979860) in patients with current or
past hepatitis B virus (HBV) infection
Asterios Saitis1, Nikolaos K. Gatselis1, Kalliopi Azariadi1, Kalliopi Zachou1, George K. Koukoulis2, George N. Dalekos1
1Department of Medicine and Research Laboratory of Internal Medicine, School of Medicine, Thessaly University, Larissa, Greece
2Department of Pathology, School of Medicine, Thessaly University, Larissa, Greece
Chronic Hepatitis C
Thomas et al, Nature 2009
Ge et al, Nature 2009
Response to Peg-IFN +RIBA Spontaneous HCV clearance
IL28B polymorphism (rs 12979860)
Chronic Hepatitis C
PD1.3 polymorphism (rs11568821)
Asociation analysis of PD-1 polymorphism with response to antiviral treatment
Genotypes SVR(n=210)
NR(n=197)
p value OR(95% CI)
PD-1.3 <0.05
G/G 150 (71.4%) 164 (83.2%)
G/A 50 (23.8%) 29 (14.7%)
A/A 10 (4.8%) 4 (2.1%)47.7
53.3
64.5
35.3
0
10
20
30
40
50
60
70
Response (n=210) Non-Response (n=197)
G/G
G/A or AA
Vidal-Castiñeira et al. Journal of Hepatology 2012
Chronic Hepatitis B
IL28B polymorphism PD1.3 polymorphism
Susceptibility to HBV infection?
Determinants of interferon response?
Chronic Hepatitis B
EASL Clinical Practice Guidelines, Journal of Hepatology 2017
Past infection95%
Chronic infection4-5%
Chronic hepatitis0.8-1%
Determinants
• Age of infection
• Genetic?• Genetic?
Chronic Hepatitis B
or
HBsAg clearance
48-week duration
High efficacy
High safety
Per os therapy
Inteferons Nucleoside/ Nucleotideanalogues
Genetic determinants of IFN response?
EASL Clinical Practice Guidelines, Journal of Hepatology 2017
Study Design
401 HBV patients
chronic hepatitisN=208
chronic infectionN=100
past infectionN=93
IL28B & PD1.3 polymorphism
Clinical- Laboratory featuresTreatment Response
IFN-treatedN=78
Methods
Gatselis et al, J Hepatol 2013; 58: S187
Allelic Discrimination Endpoint
Flu
ore
sce
nce
(53
3-5
80
)
1
Cycles
3 6 9 13 18 23 28 33 38
0.0
4.0
8.0
12.0
16.0
20.0
Flu
ore
sce
nce
(53
3-5
80
)
0.500
4.000
8.000
12.000
16.000
20.000
2.000
Fluorescence (465-510)2.000 4.000 6.000 8.000 10.000 12.000
Allele ysamples
Allele x samples
Heterozygoussamples
T
CAllele specific fluorescent
DNA Probes
IL28B genotyping
Methods
‘Residual DNA’ of serum samples
Gatselis et al, J Hepatol 2013; 58: S187
‘In house’ allelic end point discrimination assay
Direct sequencing
‘In house’ allelic end point discrimination assay
Genomic DNA of total blood samples
Methods
PD1.3 genotyping
‘In house’ PCR restriction fragment length polymorphism (RFLP)
IL28B & Susceptibility to HBV infection
Results
CC41%
CT41%
TT18%
Chronic Hepatitis B
CC40%
CT50%
TT10%
Chronic HBV infection
CC46%
CT43%
TT11%
Past Infection
N=403
PD1.3 & Susceptibility to HBV infection
Results
GG81%
GA19%
Chronic hepatitis B
GG79%
GA21%
Chronic infection
GG77%
GA20%
AA3%
Past infection
N=120
Study Design
chronic hepatitisN=208
IL28B & PD1.3 polymorphism
Clinical- Laboratory featuresLiver Disease Progression
401 HBV patients
chronic infectionN=100
past infectionN=93
IFN-treatedN=78
Chronic HBV Hepatitis Results
Clinical & laboratory features NIL28B genotype P
valueCC CT or TT
AST, IU/l, mean ±SD 77 72.4± 67.3 73.8± 94.5 0.755
ALT, IU/l, mean ±SD 190 131.1± 143.5 143.4± 203.7 0.210
γGT, IU/l, mean ±SD 75 36.6±23.3 34.5± 31.3 0.781
Bilirubin, mg/dl, mean ±SD 75 1.2±1.8 0.9±0.44 0.061
Albumin, g/dl, mean ±SD 74 4.3±0.6 4.4± 0.4 0.085
Prothrombin time, sec, mean ±SD 74 13.3±3.12 13± 1.2 0.069
Platelets, 109/μl, mean ±SD 64 180478±52816 203731± 53677 0.355
Baseline HBV DNA, IU/ml, mean ±SD 174 254647± 5280185 3137776 ± 7517539 0.292
Fibrosis at Baseline: F0-F2(frequencies, %) F3-F4
18027(69.2%)12(31.8%)
31 (44.9%)31 (77.5%)
0.120
Baseline Cirrhosis: yes(frequencies, %) no
12411 (14%)58 (86%)
33(30%)78(70%)
0.049
Progression to Cirrhosis: yes(frequencies, %) no
1383(5%)
56(95%)6 (7.6%)
73 (92.4%)0.732
Progression to Decompensation: yes (frequencies, %) no
1791 (1.4%)
67(98.6%)8 (28.6%)
103 (64.3%)0.156
HCC development : yes(frequencies, %) no
1808 (11.8%)61 (88.4%)
14 (14.4%)97(85.6%)
1.000
IL28B & Baseline Cirrhosis
Results
GenotypesIL28B
Non- Cirrhotic(n=135)
Cirrhotic(n=44)
p value
CC 58 (84.5%) 11(15.5%) <0.05
CT or TT 78 70%) 33 (30%)
Non-Cirrhosis84%
Cirrhosis16%
Non-Cirrhosis70%
Cirrhosis30%
CC CT or TT
P<0.05
Chronic HBV Hepatitis
Chronic HBV Hepatitis Results
Clinical & laboratory features NPD1.3 genotype P
valueGA or AA GG
AST, IU/l, mean ±SD 16 63.3± 30.6 57.5± 44.6 0.836
ALT, IU/l, mean ±SD 34 80± 50.2 157.9± 231.5 0.428
γGT, IU/l, mean ±SD 16 41.6± 40.5 29± 22 0.451
Bilirubin, mg/dl, mean ±SD 16 0.56±0.29 0.77±0.36 0.386
Albumin, g/dl, mean ±SD 15 4.3±0.36 4.25± 0.61 0.906
Prothrombin time, sec, mean ±SD 15 12.7±3.1.06 13.3± 1.1 0.462
Platelets, 109/μl, mean ±SD 5 221600± 50361
Baseline HBV DNA, IU/ml, mean ±SD 32 729708± 916225 3137776 ± 7517539 0.014
Fibrosis at Baseline: F0-F2(frequencies, %) F3-F4
214 (80.0%)1 (20.0%)
10 (62.5%)6 (37.5%)
0.624
Baseline Cirrhosis: yes(frequencies, %) no
3311 (14%)58 (86%)
33(30%)78(70%)
0.637
Progression to Cirrhosis: yes(frequencies, %) no
240 (0%)
5 (100%)2 (10.5%)
17 (89.5%)0.449
Progression to Decompensation: yes (frequencies, %) no
330 (0 %)6(100%)
4 (14.8%)23 (85.2%)
1.000
HCC development : yes(frequencies, %) no
330 (0 %)6(100%)
4 (14.8%)23 (85.2%)
1.000
PD1.3 & Baseline HBV DNA
Results
GenotypesPD1.3
HBV-DNA(n=132)
p value
GA or AA 729708 ± 916225 <0.05
GG 4514630 ± 7128748
1
10
100
1000
10000
100000
1000000
10000000
GA or AA GG
Baseline HBV DNA
p<0.05
Chronic HBV Hepatitis
Study Design
IL28B & PD1.3 polymorphism
Treatment Response
IFN-treatedN=78
401 HBV patients
chronic hepatitisN=208
chronic infectionN=100
past infectionN=93
IL28B & Response to IFN treatment
Results
48.351.7
24.5
75.5
0
10
20
30
40
50
60
70
80
Response Non-Response
CC
CT or TT
N=78
IFN-treated patients
PD1.3 & Response to IFN treatment
Results
2
10
1 1
0
2
4
6
8
10
12
Response Non-Response
GG
GA or GA
N=13
IFN-treated patients
Conclusions
• PD-1.3 (rs11568821) and IL28B (rs12979860) SNPs were successfully genotyped by in-house assays
• No influence of IL28B & PD1.3 polymorphisms on genetic susceptibility to HBV infection
• Prognostic Significance of IL28B rs12979860 for response to interferon treatment
• Association of IL28B polymorphism with baseline advanced liver fibrosis
Conclusions
• Larger studies to determine the prognostic significance of PD1.3polymorphism in interferon treatment
Conclusions-Perspective
• Association of PD1.3 polymorphism with baseline HBV DNA levels
Thank you for your attention
This study has been supported by Asklepios GILEAD Grants (Greece)