cloning of the hsp70 gene in barnacle larvae and its expression under hypoxic conditions
TRANSCRIPT
Cloning of the HSP70 gene in barnacle larvae and itsexpression under hypoxic conditions
S.H. Cheng *, C.H. So, P.K. Chan, C.W. Cheng, R.S.S. Wu
Department of Biology and Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong
Dissolved oxygen (DO) is one of the most important
factors in coastal marine ecosystems (Diaz and Rosen-
berg, 1995). Hypoxia is generally defined as DO levels
between 0 mg l�1 (anoxia) and 2.8 mg l�1 in the marineenvironment. Hypoxia increases in frequency and se-
verity when coupled with meteorological and hydrody-namic events. Some marine environments, such as the
bottom water of the northern Gulf of Mexico, are ex-
posed to hypoxia/anoxic events regularly. The extent of
hypoxic zones could be expanding due to increased CO2arising from the introduction of anthropogenic nutrients
(Justic et al., 1997).
Animals employ different strategies to cope with a
decline in oxygen levels. Some escape hypoxic stress bybehavioral changes. For example, demersal fishes and
crustaceans migrated from an area with DO level < 2
mg l�1 and changed their diet (Pihl et al., 1991, 1992;Pihl, 1994). The brown shrimp Penaeus aztecus migrated
when the DO decline to below 1.96 mg l�1 (Renauld,1986). Benthic macrofauna such as Amphiura filiformis
and Pectinaria koreni left their position in the sediment
in moderate and severe hypoxia (Rosenberg et al., 1991;Nilsson and Rosenberg, 1994). Fishes disappeared and
lobsters emerged from burrows when oxygen saturation
declined below 40% in the Swedish west coast (Baden
et al., 1990a).
During severe hypoxia, a reversed sex ratio was ob-
served in the Norway lobster Nephrops norvegicus
(Baden et al., 1990b). Other physiological responses to
hypoxia included ventilatory and circulatory adapta-tions (Hagerman and Baden, 1998). Manganese con-
centrations in the gills of the Norway lobsters N.
norvegicus taken from areas of repeated hypoxia were
over 20 times higher than animals taken from other
Swedish locations (Eriksson and Baden, 1998).
Other animals may adjust their metabolism during
hypoxia. Our recent work has shown that the common
carp Cyprinus carpio responded to short term and longterm hypoxia exposures by switching to alternative
metabolic pathways (Zhou et al., 2000). A significant
reduction of the intraerythrocytic levels of adenosine
and guanosine was observed in hypoxic rainbow trout
(Oncorhynchus mykiss) (Val et al., 1995). Based on two
cell types of different hypoxia tolerance isolated from an
aquatic turtle, it was proposed that the first line of
defence was a suppression of ATP-demand and ATP-
supply pathways leading to inhibition of protein syn-
thesis (Hochachka et al., 1996, 1997). The second line of
defence, which was a ‘‘rescue’’ of protein synthesis me-diated by preferential expression of certain genes, oc-
curred mainly in hypoxia tolerant cells.
Despite the fact that significant progress has been
made toward elucidating components of the mecha-
nisms regulating physiological and cellular responses to
hypoxia, it is clear that all of the regulatory elements
have not been identified nor characterized. In particular,
genes and genes products that are expressed in a char-acteristic ‘‘on-off’’ manner following changes in the level
of oxygen in coastal waters have not been fully identified
in marine coastal organisms.
Barnacles are one of the most important functional
groups in intertidal zones (Wu and Levings, 1978).
Successful recruitment and settlement of barnacle larvae
affects the population dynamics of the barnacle popu-
lations. Barnacle larvae, therefore, have been used ex-tensively as a biomonitoring species for the assessment
of a wide range of toxicants including environmental
oestrogens, antifouling agents and water-soluble com-
ponents of petroleum oils (Billinghurst et al., 1998;
Vetere et al., 1997; Donahue et al., 1977). Previous
studies have shown that exposure to water and sediment
pollution affect the abundance of larvae significantly
(Silina and Ovsyannikova, 2000). Exposure to seasonalhypoxia on the Louisiana Continental Shelf resulted in a
reduction of benthic larval flux to the seabed and re-
duced settlement of barnacle cyprids under the pycno-
cline (Powers, 1995).
In this study, we used the technique of RNA arbi-
trarily primed-polymerase chain reaction (RAP-PCR) to
obtain RNA fingerprinting of barnacle larvae exposed
to normoxic and hypoxic conditions. RAP-PCR onlyneeds minute amounts of RNA as templates for ampli-
fication and represents the ideal methodology in studies
involving nucleic acid fingerprinting of invertebrate
larvae (Welsh et al., 1992). We report here that RAP-
PCR can identify differential expression of genes in
barnacle larvae under hypoxic conditions. Sequence
analysis of the differentially expressed genes showed that
one of the clones contained a nucleotide sequence re-sembling the heat shock protein 70 (HSP70). Using
*Corresponding author. Tel.: +852-2788-9027; fax: +852-2788-
7406.
E-mail address: [email protected] (S.H. Cheng).
Baseline / Marine Pollution Bulletin 46 (2003) 659–676 665
rapid amplification of cDNA ends (RACE), we were
able to obtain the full length cDNA of the barnacle
HSP70 gene. The expression of this gene in barnacle
adults exposed to hypoxic conditions was investigatedby Northern blot analysis.
Barnacles (Balanus amphitrite Darwin) were collected
from the intertidal to sublittoral fringe at the Sai Kung
Ferry Pier in the New Territories of Hong Kong. Active
swimming stage II naupliar larvae showing strong
phototactic behaviour were collected from barnacle
brood sacs for subsequent experiments. Three thousand
nauplii were put into chambers incubated in fish tankscontaining 30 l of filtered seawater with continuous in-
flux of mixed oxygen (5%)/nitrogen (95%) gas. The level
of DO was maintained at 1.0 mgml�1. In the controlgroup, the larvae were incubated in a similar set up
except the gas mixture was replaced by natural air. Both
groups of larvae were incubated for 24 h with a sub-
merged probe for monitoring DO levels. Adult barna-
cles were also exposed to the same treatment in separatefish tanks.
Total RNA was extracted from 3000 larvae using 1
ml TriZol reagent (Life Technologies, USA), according
to manufacturer�s instructions. 100 ng of total RNA wasreverse-transcribed by Superscripte II Reverse Tran-
scriptase (Gibco BRL, USA) following the manufac-
turer�s instructions, using 400 ng of random hexamers asprimers. Differentially expressed genes were amplified byPCR using 46 arbitrary primers in thermal profile con-
taining low stringency steps and high stringency steps. A
negative control containing no cDNA template was in-
cluded. Amplified products showing differential patterns
of expression were purified from agarose gel using a
Qiaex II Gel Extraction Kit (Qiagen, Germany) ac-
cording to manufacturer�s instructions, and were thencloned into a pUC18 vector using a SureClone LigationKit (Amersham Pharmacia, USA) for sequencing reac-
tion using a dRhodamine Terminator Automated Se-
quencing Kite (PE Biosystems, England) and for probe
synthesis in Northern hybridization analyses. To con-
firm the differential expression of cloned genes under
hypoxia by northern hybridization, cloned products
were hybridized to total RNA isolated from adults ex-
posed to hypoxia.Full length cDNAs were synthesized by RACE re-
action from total barnacle larvae RNA isolated by
PolyAtract mRNA Isolation System III (Promega,
USA). RACE reactions were preformed by Marathon
cDNA amplification kit (ClonTech, USA) according to
the manufacturer�s instruction. Gene specific primerswere designed based on the sequences of the differen-
tially expressed genes identified.Sequences were searched for homology using the
program ‘‘BLAST’’ provided by National Center for
Biotechnical Institute (NCBI) (http://www.ncbi.nlm.
nih.gov/). The deduced amino acid sequences were ob-
tained by the ‘‘ORF Finder’’ program available at the
same NCBI site. Deduced amino acid sequences were
compared to known genes in the NCBI databases.
Exposing stage II naupliar larvae to hypoxic condi-tions provides a means of characterising induction and
inhibition of hypoxia responsive genes. In order to
identify differentially expressed genes in these barnacle
larvae, we used the procedure of RAP-PCR. Screening
with 46 arbitrary primers revealed at least 39 gene
products that exhibited elevated or reduced expression
between normoxic and hypoxic treated larvae. The
likelihood of other differentially expressed genes presentin these two conditions, other than those described here,
is very high since this study only used one fifth of the
usual number of primers normally engaged in a RAP-
PCR. Sizes of the gene products ranged from 110 bp to
1.1 kb. Among these 39 gene products, 16 were up-
regulated under hypoxia and 23 were down-regulated
under hypoxia. One of the RAP-PCR experiments is
shown in Fig. 1. In this experiment, nine sets of arbitraryprimers were used. Six differentially expressed gene
products, with sizes ranging from 300 bp to 1 kb, were
obtained using three of the primers sets.
These 39 gene products were then re-amplified by
PCR to obtain sufficient amounts for subcloning into
plasmid vectors. Insert containing colonies were selected
and plasmid DNA was then extracted for nucleotide
sequencing. Of the 39 gene products, 4 showed similarityto cloned genes following nucleotide analysis. The sizes
and similarities to cloned genes of these 4 clones are
listed in Table 1.
Optimal conditions for 50 and 30 RACE of the cloneG512 (Table 1) were obtained after 9 experiments (data
not shown). A 1.2 kb product was obtained from the 50
RACE and a 1.7 kb product was obtained from the 30
RACE. The nucleotide sequences from clone G512and its RACE products were aligned to obtain the full
length nucleotide sequence (Fig. 2; accession number:
AY150182). The full length nucleotide sequence was
2250 bp and sequences such as start codon and stop
codon could be identified. The total number of amino
acids expected is 650.
The predicted amino acid sequence of barnacle
HSP70 was compared and aligned to cloned HSP genesfrom other species (Fig. 3). Most of the HSP70 genes
showing the highest percentage of identity were cloned
from terrestrial and marine invertebrates (Table 2).
Total RNA, extracted from adult barnacles exposed
to normoxic and hypoxic conditions, was separated in a
formaldehyde gel. Using the RT-PCR product of HSP70
as a probe, a signal was obtained in both control and
hypoxic treated barnacles (Fig. 4). The size of the signalwas found to be 2.3 kb according to the molecular
weight markers. The house keeping gene b-actin wasused as an internal probe. The intensity of the hybridi-
sation signals was compared by image analysis. It was
666 Baseline / Marine Pollution Bulletin 46 (2003) 659–676
found that HSP70 expression was 2.5-fold stronger in
the hypoxic treated barnacles than the controls.
We have used the RAP-PCR method to clone dif-
ferentially expressed genes in barnacle larvae exposed tohypoxic conditions. The RAP-PCR was first used by
Welsh et al. (1992) to distinguish differentially expressed
genes in different murine tissues. We used 46 different
arbitrary primers in six RAP-PCR experiments and
obtained 39 differentially expressed gene products. This
study is one of the first reports on differentially ex-
pressed genes in barnacle larvae. Four out of the 39 gene
products shared similarity to cloned genes (Table 1)while the remaining 35 appeared to be novel sequences.
The quest for finding differentially expressed genes
has extended to different methodologies including the
RAP-PCR, differential display and more recently,
macro- and micro-cDNA arrays. Molecular character-
ization and cloning of differentially expressed genes have
been carried out in various aquatic species. Up-regula-
tion of a novel secretogranin-II mRNA was identified byRAP-PCR in the goldfish pituitary (Blazquez et al.,
1998). A novel cadherin was cloned and characterized
from the colonial invertebrate Botryllus schlosseri using
differential display (Levi et al., 1997). Systematic isola-
tion of peptide signals regulating developmental proce-
dures of the hydra was achieved by differential display
(Takahishi et al., 1997). The postmolt stage in the
decapod crustacean Penaeus japonicus was analysed bydifferential display and novel gene products associ-
ated with this physiological stage have been identified
(Watanabe et al., 2000).
In this study, we identified 16 up-regulated gene
products and 23 down-regulated gene products in bar-
nacle larvae exposed to hypoxia. Out of these 39 gene
products, 4 shared similarity to genes with known
functions (Table 1). Identification of hypoxia responsivegenes in mammalian cell lines and tissues using the dif-
ferential display methodology have been reported. In
HeLa cells exposed to 1% oxygen, novel genes and genes
with known functions, such as the glucose transporter 3
and adenylate kinase isoenzyme 3, were identified
(O�Rourke et al., 1996). Rat lung fibroblasts exposed to5 Pa pO2 were subjected to differential display analysis
(Takahashi et al., 1998) and induction of the phospho-glycerate mutase B gene, which might contribute to the
regulation of glycolytic flux under reduced O2 tension,
was found. Over-expression of genes such as the tissue
inhibitor of metalloproteinase-1, prostate tumour in-
Fig. 1. RAP-PCR amplification of total RNA of barnacle larvae in different experimental treatments. Barnacle larvae were treated in (1) hypoxia 1.0
mg O2 l�1; (2) normoxia. RAP-PCR using different arbitrary primers is indicated by the following: M: 1 k plus DNA marker (Gibco BRL), C:
negative control without cDNA template.
Table 1
Clones sharing similarities to known genes
Clone designation Size (bp) Shared similarity to known genes (accession number)
E121 110 79% similar to Xenopus laevis protein kinase (Z17205)
G512 600 81% similar to Crassostrea gigas HSP70 (AF144646)
D521 410 56% similar to human p76 (NM_00480)
D221 260 82% similar to human cell division factor (XM_009947)
Baseline / Marine Pollution Bulletin 46 (2003) 659–676 667
ducing factor-1, enolase-alpha and prothymosin-alpha
were observed in differential display experiments on
hypoxia treated human microvascular endothelial cells
(Roland et al., 2000).
One of our differentially expressed gene products,
clone G512, shared 81% similarity to the Pacific oyster
HSP70 gene (Table 1). Using RACE, the full length
cDNA of the barnacle HSP70 was cloned and the nu-cleotide sequence shared high homology to invertebrates
and mammals alike (Table 2). The HSP family of pro-
teins, also known as the stress proteins, function as
molecular chaperones (see Buchner, 1996). They sup-
press the irreversible folding reactions of other proteins
and hence enhance survival of the organisms. They are
induced by many environmental stresses including ex-
posure to toxicants, changes in temperature and osmo-
larity, and hypoxia/anoxia (see Lewis et al., 1999).
Among the HSP family, HSP70 is the most conserved
member and has been identified in marine algae, inver-
tebrates and chordates. This stress protein has been used
as a biomarker in these aquatic species.
In our investigation of HSP70 expression in barnacleadults exposed to hypoxic conditions (Fig. 4), it ap-
peared that 24 h treatment at 1.0 O2 mg l�1 could induce
a 2.5-fold increase in RNA levels. Our data supported
the hypothesis that induction of HSP70 transcription
occurred following hypoxia exposure. Altered expression
of HSP70 under hypoxia conditions has been investi-
Fig. 2. Full length nucleotide sequence of Balanus heat shock protein 70 (accession number: AY150182).
668 Baseline / Marine Pollution Bulletin 46 (2003) 659–676
gated in other organisms. Induction of HSP70 expression
in ischaemia and hypoxia in the mammalian brain and
myocardium has been well documented (see Sharp and
Sagar, 1994; Gray et al., 1999). In HSP70-overexpressing
Fig. 3. Conserved sequences among Balanus HSP70 protein and other species. Multiple alignment of Balanus HSP70 predicted amino acid sequences
(accession number: AY150182) with HSP70 gene products cloned from other species (accession numbers are: AAA74394, AAC23392, AAD31042,
AAF09496, AAB06239, P19120, AAK17898). Identical amino acid sequences are shaded.
Baseline / Marine Pollution Bulletin 46 (2003) 659–676 669
rat hearts subjected to global ischaemia, the number
of apoptotic cells has been observed to be less than that
of the control-transfected hearts (Suzuki et al., 2000).
These authors suggested that HSP70 could be associated
with a reduction in myocardial apoptosis following is-
chaemia. In the over-wintering common frogs, Rana
temporaria, a significant increase in the HSP70 was
found after 1 month of hypoxic submergence (Currie andBoutilier, 2001). It was suggested that the HSP70 might
contribute to the heart�s remarkable hypoxia and anoxiatolerance and might act to defend metabolism during the
over-wintering months.
Down-regulation of HSP70, however, was observed
in human microvascular endothelial cells (Oehler et al.,
2000). Rainbow trout exposed to hypoxia did not show
any increase in HSP70 in their nucleated red blood cells,hepatocytes, gill epithelial cells and myocardial cells
(Currie et al., 1999; Airaksinen et al., 1998; Gamperl
et al., 1998).
We have cloned the HSP70 in barnacle larvae and
demonstrated an induction of HSP70 expression fol-
lowing exposure to hypoxia. Relatively few genes have
been cloned in the genome of the barnacle. Our report
not only adds to the understanding of the barnacle ge-
nome by cloning of the HSP70 gene, it also provides a
protocol for measuring the induction of this gene in this
species. In addition, our data also support the use of
HSP70 as a biomarker of exposure and expand the ap-plication of barnacles as a model organisms for bio-
monitoring in the marine environment.
Acknowledgements
We thank Prof. David Randall and Prof. Nora Tam
for their critical comments. This project is supportedsubstantially by a research grant awarded by the Re-
search Center for Coastal Pollution and Conservation,
City University of Hong Kong.
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0025-326X/03/$ - see front matter � 2003 Elsevier Science Ltd. All rights reserved.
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