chapter 22(a) organic and biological molecules. figure 22.1: the c—h bonds in methane

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Chapter 22(a) Organic and Biological Organic and Biological Molecules Molecules

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Page 1: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Chapter 22(a)

Organic and Biological Organic and Biological MoleculesMolecules

Page 2: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.1: The C—H bonds in methane.

Page 3: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.2: (a) The Lewis structure of ethane (C2H6). (b) The molecular structure of ethane represented by space-filling and ball-and-stick models.

Page 4: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–4

Figure 22.3: The structures of (a) propane (CH3CH2CH3) and (b) butane (CH3CH2CH2CH3). Each

angle shown in red is 109.5º.

Page 5: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–5

Page 6: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–6

Figure 22.4: (a) Normal butane (abbreviated n-butane). (b) The branched isomer of

butane (called isobutane).

Page 7: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–7

Normal pentane.

Page 8: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–8

Page 9: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.5: (a) The molecular structure of cyclopropane (C3H6). (b) The overlap of the sp3 orbitals that form the C—C bonds in cyclopropane.

Page 10: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.6: The (a) chair and (b) boat forms of cyclohexane.

Page 11: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–11

Figure 22.7: The bonding in ethylene.

Page 12: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–12

Figure 22.8: The bonding in ethane.

Page 13: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.9: The two stereoisomers of 2-butene: (a) cis-2-butene and (b) trans-2-butene.

Page 14: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–14

Figure 22.10: The bonding in acetylene.

Page 15: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–15

Figure 22.11: (a) The structure of benzene, a planar ring system in which all bond angles are

120º. (b) Two of the resonance structures of benzene. (c) The usual representation of benzene.

Page 16: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.12: Some selected substituted benzenes and their names. Common names are given in parentheses.

Page 17: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–17

Page 18: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Chapter 22(b)

Organic and Biological Organic and Biological Molecules Molecules (cont’d)(cont’d)

Page 19: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–19

Page 20: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–20

Page 21: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–21

Figure 22.13: Some common ketones and aldehydes.

Page 22: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.14: Some carboxylic acids.

Page 23: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.15: The general formulas for primary, secondary, and tertiary amines. R, R', and R"

represent carbon-containing substituents.

Page 24: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–24

Page 25: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–25

A radio from the 1930’s made of Bakelite.

Page 26: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–26

A scanning electron microscope image showing the fractured plane of a self-healing material with a

ruptured microcapsule in a thermosetting matrix.

Page 27: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–27

Page 28: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–28

Figure 22.16: The reaction to form nylon can be carried out at the interface of two immiscible liquid layers in a beaker. The

bottom layer contains adipoyl chloride, dissolved in CCl4, and the top layer contains hexamethylenediamine, dissolved in

water. A molecule of HCl is formed as each C—N bond forms.

Page 29: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–29

Wallace H. Carothers

Page 30: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–30

Figure 22.17: (a) A tube composed of HDPE is inserted into the mold (die). (b) The die closes, sealing the bottom of the

tube. (c) Compressed air is forced into the warm HDPE tube, which then expands to take the shape of the die. (d)

The molded bottle is removed from the die.

Page 31: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–31

Figure 22.18: The 20 a-amino acids found in most proteins. The R group is

shown in color.

Page 32: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–32

Figure 22.18 (cont’d)

Page 33: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–33

Figure 22.19: The amino acid sequences in (a) oxytocin and (b) vasopressin. The

differing amino acids are boxed.

Page 34: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.20: Hydrogen bonding within a protein chain causes it to form a stable helical structure called the -helix. Only the main atoms in the helical backbone are shown here. The hydrogen bonds are not shown.

Page 35: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Chapter 22(c)

Organic and Biological Organic and Biological Molecules Molecules (cont’d)(cont’d)

Page 36: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.21: Ball-and-stick model of a portion of a protein chain in the -helical arrangement, showing the hydrogen-bonding interactions.

Page 37: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–37

Figure 22.22: When hydrogen bonding occurs between protein chains rather than within them, a stable structure (the pleated

sheet) results.

Page 38: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–38

Figure 22.23: (a) Collagen, a protein found in tendons, consists of three protein chains. (b) The pleated-sheet

arrangement of many proteins bound together to form the elongated protein found in silk fibers.

Page 39: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–39

Figure 22.24: Summary of the various types of interactions that stabilize the tertiary structure of a protein: (a) ionic, (b) hydrogen bonding, (c) covalent, (d) London dispersion, and

(e) dipole–dipole.

Page 40: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.25: The permanent waving of hair.

Page 41: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–41

Page 42: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.26: A schematic representation of the thermal denaturation of a protein.

Page 43: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.27: When a tetrahedral carbon atom has four different substituents, there is no way that its mirror image can be superimposed.

Page 44: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–44

Figure 22.28: The mirror image optical isomers of glyceraldehyde.

Page 45: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.29: The cyclization

of D-fructose.

Page 46: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–46

Figure 22.30: The cyclization of glucose. Two different rings are possible; they differ in the orientation of the

hydroxy group and hydrogen on one carbon, as indicated. The two forms are designated and and are shown here

in two representations.

Page 47: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–47

Figure 22.31: Sucrose is a disaccharide formed from -D-glucose and fructose.

Page 48: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–48

Figure 22.32: (a) The polymer amylose is a major component of starch and is made up of

-D-glucose monomers.(b) The polymer cellulose, which consists of -D-glucose monomers.

Page 49: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.33: The structure of the pentoses (a) deoxyribose and (b) ribose.

Page 50: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–50

Figure 22.34: The organic bases found in DNA and RNA.

Page 51: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–51

Figure 22.35: (a) Adenosine is formed by the reaction of adenine with ribose. (b) The reaction of phosphoric acid with adenosine to form the ester

adenosine 5-phosphoric acid, a nucleotide.

Page 52: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.36: A portion of a typical nucleic acid chain. Note that the backbone consists of sugar–phosphate esters.

Page 53: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–53

Figure 22.37: (a) The DNA double helix contains two sugar–phosphate backbones, with the bases from the two

strands hydrogen-bonded to each other. The complementarity of the (b) thymine-adenine and (c)

cytosine-guanine pairs.

Page 54: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Figure 22.38: During cell division the original DNA double helix unwinds and new complementary strands are constructed on each original strand.

Page 55: Chapter 22(a) Organic and Biological Molecules. Figure 22.1: The C—H bonds in methane

Copyright © Houghton Mifflin Company. All rights reserved. 22a–55

Figure 22.39: The mRNA molecule, constructed from a specific gene on the DNA, is used as the

pattern to construct a given protein with the assistance of ribosomes.