ccehub sharing , exploring and analyzing data an environment for collaborative cancer research
DESCRIPTION
clinical data. observational & scientific data. computation & visualization. decision support. cceHUB Sharing , Exploring and Analyzing Data An Environment for Collaborative Cancer Research. Ann Christine Catlin 6 th Annual Cancer Care Engineering Retreat 05-27-2011. - PowerPoint PPT PresentationTRANSCRIPT
cceHUBSharing , Exploring and Analyzing Data
An Environment for Collaborative Cancer Research
clinical data observational & scientific data
decision supportcomputation &visualization
Ann Christine Catlin6th Annual Cancer Care Engineering Retreat
05-27-2011
Great Graduate Students !
Ruchith FernandoLancelot Guoheng ChenSahan GamageSudheera FernandoPuneet GuptaSumudinie FernandoPreeti RaoNabeel Yousef
cceHUB Advances in 2001
Clinical Patient Data & Sample Tracking • More detailed and more complete data collection : diagnosis, treatment, surgery, follow-up
• New type of data : behavior lifestyle
• Customized projects: tissue acquisition
Tissue Acquisition : Clinical Data & Biorepository with Tracking
Data Collection : New Data … More Detailed Data
cceHUB Advances in 2001
Laboratory Data Upload & Tracking• Repository size >1 TB• Security upgrades• Data verification and validation• Metadata collection• Help with lab uploads … e.g., mass spectrometry data
Always looking for ways to make uploads easier, more complete, and more accessible to analysis tools.
Lab #SamplesAnalyzed % Total
Files/Samples
Uploaded
Average File Size
Analysis Toolsat cceHUB
Using cceHUB tools ?
Bindley BiosciencesGlobal Proteomics
193 73% 193 files193 samples
80MB Discovery PipelineResults Visualize/Compare
> 800 runs through discovery pipeline
TeegardenVitamin D
225 85% 4 files225 samples
< 1MB Vitamin D-Blood Draw -Clinical Data merge for SAS
DataView
RafteryMetabolomicsGCGC-MS
230 87% 230 files230 samples
1 GB Peak classification /alignmentGCGC-MS Visual Analytics
RafteryMetabolomicsNMR
230 87 % 2 files230 samples
< 1MB
XuLipidomics
143 54% 1 file143 samples
< 1MB Lipidomics-BloodDraw-Clinical Data merge for SAS
DataView
KlaunigTEAC analysis
259 98% 1 file259 samples
< 1MB TEAC-Blood Draw-Clinical Data merge for SAS
DataView
KlaunigComet Assay
101 38% 1 file101 samples
< 1MB CometAssay-Blood Draw-Clinical Data merge for SAS
DataView
KlaunigGenotyping Assay
-- POCRE, MaCH genotype imputation
(used by stat group on their own data)
Other: Laurie ParkerMedicinal Chemistry and Molecular Pharmacology
-- Maldi Quantifier
Laboratory data at cceHUB: Some Statistics
Laboratory data at cceHUB: Metadata
cceHUB Advances in 2001
Analysis Tools / Analysis Data Collections• Proteome Discovery Pipeline• Analysis Data Viewer• Building models & generating results• Output collections for tools• New tools: MacH, Mach Results Visualization, POCRE, Maldi Quantifier, specialized plotting tools
New Analysis Tools
Analysis Data Viewer
Tool Output Collections for Browsing and Analysis
Collaboration : Sharing Idea for Analysis, Getting Results
Our technology extends to other cancer research workflows
Using the HUB cyber infrastructurewith cceHUB data technology
to further collaborativeCancer Care Engineering Research