bit 477/577: metagenomics -...
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BIT 477/577: Metagenomics
Overview: • Par$cipants will be introduced to a variety of methods for studying the complex microbial
popula$ons that surround us, including applica$ons, limita$ons, and health and legal implica$ons.
• Students will apply high-‐throughput sequencing techniques to mine the gene$c diversity of complex popula$ons such as the community of microbes growing happily in a kitchen sink.
Labs: 1. Isola$on of DNA from student-‐selected microbial community and prepara$on (Q/C) for high-‐
throughput sequencing. 2. Assembly and gene annota$on of sequence data from microbial community using cloud
compu$ng. 3. Use of bioinforma$cs soLware for analyses of metagenomic surveys. 4. Use of cloud-‐based pipelines for analyzing 16S sequences. 5. Use of QIIME for diversity analyses.
Lectures: 1. Introduc$on to metagenomics and microbial
communi$es 2. Exploi$ng genome sequencing for drug and
biotechnology product discovery. 3. Approaches and limita$ons of metagenomic
surveys. 4. Analyzing and visualizing metagenomic data
(R and online tools for sequence analysis)