beyond the pdf 2, 2013
DESCRIPTION
TRANSCRIPT
Embedding underpinning mechanisms for data reuse and
reproducibility in bioscience
The ISA Exemplar (Inves=ga=on/Study/Assay)
-‐behind the PDF-‐
Alejandra González-‐Beltrán, PhD Oxford e-‐Research Centre, University of Oxford, UK
Beyond the PDF 2, Amsterdam, Netherlands, March 20th 2013
Source of the figure: EBI website
Bioscience Mul=ple domains Mul=ple communi=es Mul=ple technologies Mul=ple data types Mul=ple data formats Mul=ple data repositories …
ISA infrastructure
Generic format for rich experimental descrip=ons
Open source soVware tools
Community engagement
Minimise the burden and provide tools and incen=ves for
repor=ng, cura=ng, sharing
data and metadata of bioscience experiments
to enable the
comprehension, re-‐use of data in subsequent inves=ga=ons
and reproducibility of bioscience
cura=on at source incremental across the research cycle
(from planning/grant wri=ng up to manuscripts publica=on and beyond)
experimental design
+ sta=s=cal methods
provenance/aZribu=on tracking aggrega=on:
publica=ons, data workflow
samples characteris=cs
Experimental descrip=on
ontology annota=ons
…
community standards
curate
create
collaborate
store
analyse
share
infer
nanopub
submit
visualize share
link query integrate
query filter
research objects