arf gaps and their interacting proteins
TRANSCRIPT
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# 2007 The Authors
Journal compilation # 2007 Blackwell Publishing Ltd
doi: 10.1111/j.1600-0854.2007.00624.xTraffic 2007; 8: 1465–1475Blackwell Munksgaard
Review
Arf GAPs and Their Interacting Proteins
Hiroki Inoue and Paul A. Randazzo*
Laboratory of Cellular and Molecular Biology, Center forCancer Research, National Cancer Institute, Bethesda,MD 20892, USA*Corresponding author: Paul A. Randazzo,[email protected]
Membrane trafficking and remodeling of the actin cyto-
skeleton are critical activities contributing to cellular
events that include cell growth, migration and tumor
invasion. ADP-ribosylation factor (Arf)-directed GTPase
activating proteins (GAPs) have crucial roles in these
processes. The Arf GAPs function in part by regulating
hydrolysis of GTP bound to Arf proteins. The Arf GAPs,
which have multiple functional domains, also affect the
actin cytoskeleton and membranes by specific interac-
tions with lipids and proteins. A description of these
interactions provides insights into the molecular mecha-
nisms by which Arf GAPs regulate physiological and
pathological cellular events. Here we describe the Arf
GAP family and summarize the currently identified
protein interactors in the context of known Arf GAP
functions.
Key words: actin, Arf1, Arf6, ASAP1, circular dorsal
ruffles, cortactin, EGF receptor, focal adhesion, invado-
podia, podosome
Received 10 May 2007, revised and accepted for publica-
tion 6 July 2007, uncorrected manuscript published
online 12 July 2007, published online 31 July 2007
The ADP-ribosylation factor (Arf) GTPase activating pro-
teins (GAPs) are a family of multidomain proteins ex-
pressed in eukaryotes. The proteins were first identified
as regulators of Arf proteins. The Arfs are GTP-binding
proteins that control membrane traffic and remodeling of
the actin cytoskeleton. By regulating Arfs, Arf GAPs affect
bothmembranes and the actin cytoskeleton. However, the
Arf GAPs have multiple domains that can function both
dependently and independently of Arf proteins to elicit
structural changes and to transduce signals in cells.
The Arf family of GTP-binding proteins is a subfamily of the
Ras superfamily. There are six Arf genes in the mammalian
genome (five in the human genome). The six Arf proteins
are divided into three classes on the basis of amino acid
sequence (1). Class I includes Arf1, Arf2 and Arf3; class II
includes Arf4 and Arf5; and class III includes Arf6. Of
these, Arf1 and Arf6 are the most extensively studied
(2–4). Arf1 has been implicated in Golgi–endoplasmic
reticulum (ER) retrograde transport, intra-Golgi transport,
trafficking from the trans Golgi network (TGN), transport in
the endocytic pathway and recruitment of paxillin to focal
adhesions (FAs). Arf6 has been found to affect endocyto-
sis, phagocytosis, receptor recycling and the formation of
actin-rich protrusions and ruffles (4,5).
The function of Arf proteins is dependent on binding and
hydrolyzing GTP, thereby cycling between GTP-bound
(Arf�GTP) and GDP-bound (Arf�GDP) forms of the protein.
The nucleotide exchange rate intrinsic to Arf is less than
0.01/min and the intrinsic GTPase rate is not detectable (6).
Consequently, the cycle requires the action of accessory
proteins called guanine nucleotide exchange factors and
GAPs. ArfGAP1 was the first Arf GAP purified and cloned.
Examination of ArfGAP1 in vivo yielded data that were
consistent with function as an Arf1 regulator at the Golgi
apparatus (7). The Arf GAPs that were subsequently
identified are structurally complex proteins with molecular
weights between 80 and 200 kDa. In addition to regulating
membrane traffic, several Arf GAPs have been found to be
regulators of the actin cytoskeleton and to be elements of
signal transduction pathways.
The actin structures affected by Arf GAPs are integrated
with membranes and involved in changes in cell shape or
cell movement such as migration and cancer cell invasion.
The actin structures include FAs, invadopodia (and highly
related podosomes), peripheral membrane ruffles and
circular dorsal ruffles (CDRs). Focal adhesions, invadopo-
dia and podosomes (8,9) attach the actin cytoskeleton to
the extracellular matrix (ECM), mediate signal transduction
and are sites of active endo- and exocytosis. Peripheral
membrane ruffles are actin-rich extensions from the cell
edge that are also sites of active endo- and exocytosis and
signaling (10). Circular dorsal ruffles are ring-like structures
projecting from the dorsal surface of the cell. Circular
dorsal ruffles are comprised of labyrinths of tubulated
membranes linked to polymerized actin and are sites of
endocytosis (8,9,11,12).
Part of the effect of the Arf GAPs on cytoskeletal struc-
tures is mediated by the regulation of Arfs. Arf6 has been
implicated in the formation of invadopodia and peripheral
membrane ruffles (5,13). Arf1 has been implicated in FA
dynamics (14). However, the molecular basis for Arf
function at each of these sites is not well defined.
Furthermore, some of the effects of Arf GAPs on the
cytoskeleton have been found to be independent or only
partly dependent on GAP activity; in these cases, the
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dominant determinant of the effect of the Arf GAP protein
is association with proteins that contribute to the regula-
tion or structure of the cytoskeletal element. These con-
siderations together with examination of Arf GAPs as Arf
effectors have provided the basis for models explaining the
regulation of cell movement and new insights into the
regulation of the cytoskeleton and associated signaling. In
this review, we describe the Arf GAP family, catalog
proteins that interact with Arf GAPs and discuss hypoth-
eses related to the significance of the associated proteins
to cell signaling and regulation of cell structure.
The Arf GAP Family
The Arf GAPs have a common domain, the Arf GAP
domain, comprising a zinc-binding motif. At least 24 genes
that encode proteins with Arf GAP domains have been
found in the human genome. Most of them have several
synonyms, which can be a source of confusion in the Arf
GAP literature. In Figure 1A, the synonyms are summa-
rized. We have classified the Arf GAPs into two major
types, ArfGAP1 and AZAP types, according to the overall
domain structure (15) (Figure 1). The former type of Arf
GAPs have an Arf GAP domain at the extreme N-terminus
of the protein and the latter contain an Arf GAP domain
between the PH and ankyrin (ANK) repeat domains. Each
Arf GAP group is further subdivided based on additional
domains (Figure 1B).
The six genes grouped as ArfGAP1 type are divided into
three subtypes – ArfGAP, SMAP and GIT. ArfGAP1 and
ArfGAP3 belong to the Arf GAP subtype. In addition to an
N-terminal GAP domain, ArfGAP1 has two ArfGAP1 lipid-
packing sensor (ALPS) domains, which are short stretches
of amino acids that can sense membrane curvature (16).
The GAP activity of ArfGAP1 is stimulated by diacylglycerol
and by increases in membrane curvature (16,17). The
primary function of ArfGAP1 is regulation of the Golgi
apparatus. Initially, ArfGAP1 was proposed to function in
coat disassembly of transport vesicles from the Golgi
through inactivation of Arf1 (7,18,19). Consistent with this
model, the ALPS domains of ArfGAP1 provide a mecha-
nism by which GAP activity increases with changes in
membrane curvature associated with forming transport
vesicles (20,21). Recent evidence indicates that ArfGAP1
may also be a component of a vesicle coat complex that
promotes cargo sorting and that drives vesicle formation
(22–26).
SMAP1 and SMAP2 have been recently characterized
(27,28). Each contains a clathrin box for clathrin binding in
addition to an N-terminal Arf GAP domain. SMAP1 and
SMAP2 function as GAPs for Arf6 and Arf1, respectively.
Evidence for this specificity includes colocalization with
Arf6 in HeLa cells treated with aluminum fluoride (AlF4)
(27,28), which is thought to stabilize an Arf–GDP–AlF4–GAP
complex (29). SMAP2 colocalized with the clathrin adaptor
protein-1 (AP1) and EpsinR (an AP1-binding protein involved
in TGN38 trafficking), on early endosomes and TGN, which
is an Arf1-dependent pathway (28). The primary function of
SMAPs is thought to be as regulators of Arfs.
Two members of the GIT subfamily, GIT1 (Cat1/p95APP1)
and GIT2 (Pkl/Cat2/p95APP2), have three ANK repeats,
a Spa-homology domain (SHD), a coiled-coil domain and
a C-terminal paxillin-binding site (PBS). The GITs have been
proposed to function as regulators of both membrane
traffic and FAs. Although GITs do not show a preference
for particular Arf isozymes in vitro (30), they colocalize with
Arf6 in the cell periphery in vivo. Moreover, functional
analyses of GITs on endocytic events, including G-protein-
coupled receptor internalization, suggest GITs function
with Arf6 (31,32). It has also been reported that over-
expression of GIT2-short, a splice variant of GIT2 lacking
the C-terminal PBS, induced redistribution of b-COP,
which is consistent with function as an Arf1 GAP (33).
AZAP-type Arf GAPs are characterized by a PH, Arf GAP,
ANK repeat domain structural motif. Twelve genes for
AZAPs are subdivided into four subtypes (ASAPs, ACAPs,
ARAPs and AGAPs). ASAP-subtype GAPs comprise a Bin/
amphiphysin/Rvs (BAR) domain, a PH domain, an Arf GAP
domain, ANK repeats, a proline-rich (Pro) domain and an
SH3 domain; ASAP3 (UPLC1/DDEFL1/ACAP4) does not
have the C-terminal SH3 domain. ASAP1 (DEF1/DDEF1/
centaurin b4/AMAP1/PAG2) has been implicated in the
regulation of FAs, CDRs, invadopodia and podosomes
(12,34,35). ASAP1 and ASAP2 (Papa/DDEF2/centaurin
b3/AMAP2/PAG3) prefer Arf1 and Arf5 to Arf6 in vitro
(36,37). Consistent with the in vitro results, overexpres-
sion of ASAP1 in vivo has been reported to decrease
Arf1�GTP levels and to increase Arf6�GTP levels (38,39).
Furthermore, ASAP1 does not inhibit Arf6-dependent
membrane protrusions (40). Some evidence supports the
idea that ASAP1 and ASAP2 also function with Arf6
through direct binding and slow catalysis (41,42).
ASAP1 GAP activity is more extensively analyzed than
those of other Arf GAPs. The GAP activity is stimulated
about 10 000-fold by PI(4,5)P2 and phosphatidic acid (PA)
(36,43). This stimulation depends on a conformational
change that is caused by PI(4,5)P2 binding to the PH
domain (43,44). Kinetic studies support the proposal that
ASAP1 functions in binary complex with Arf1 to induce
GTP hydrolysis; however, a description of the details
concerning the contribution of specific amino acids from
ASAP1 and Arf to catalysis will require further structural
studies (29,44,45).
ACAPs are similar to ASAPs in structure. They are com-
posed of BAR, PH, Arf GAP and ANK repeats domains.
ACAP1 (centaurin b1) and ACAP2 (centaurin b2) were
biochemically characterized and found to have a preference
for Arf6 over Arf1 and Arf5 in vitro and in vivo (40). Both are
activated by PI(4,5)P2 and PI(3,5)P2 (40).
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A
ArfGAP1
ArfGAP3
SMAP1
SMAP2
GIT1
GIT2
ASAP1
ASAP2
ASAP3
ACAP1
ACAP2ACAP3ARAP1
ARAP2
ARAP3
AGAP1
AGAP2
AGAP3
Subtype SynonymNCBI Gene ID
(human/mouse)Arf GAPs
55738 / 228998
26286 / 66251
60682 / 98366
10902 / 69780
28964 / 216963
9815 / 26431
50807 / 13196
8853 / 211914
55616 / 230837
9744 / 216859
23527 / 78618116983 / 140500116985 / 69710
116984 / 212285
64411 / 106952
116987 / 347722
116986 / 216439
116988 / 213990
ArfGAP
SMAP
GIT
ASAP(AZAP-type)
ACAP
ARAP
AGAP
(ArfGAP1-type)
ARF1GAP / MGC39924 / HRIHFB2281
FLJ13159 / FLJ42245
BRD8 / p120 / Smap1l
Cat-1 / p95-APP1 / KIAA0148 / MGC760
Cat-2 / p95-APP2 / PKL
AMAP1 / DDEF1 / DEF1 / PAG2 / Centaurin beta4 / Shag1 / KIAA1249PAP / AMAP2 / DDEF2 / PAG3 / Centaurin beta3 / FLJ42910 / Gm1523 /
DDEFL1 / UPLC1 / ACAP4 / FLJ20199 /
Centaurin beta1 / KIAA0050 / MGC25782 /
Centaurin beta2 / KIAA0041Centaurin beta5 / KIAA1716Centaurin delta2 / KIAA0782Centaurin delta1 / FLJ13675 / FLJ44916 / KIAA0580 / PARX
MGC47358
Gm140 / MGC102639
Gm592 / MGC90837
Centaurin delta3 / DRAG1 / FLJ21065 / KIAA4097Centaurin gamma2 / GGAP1 / KIAA1099 / MGC71657Centaurin gamma1 / FLJ16430 / GGAP2 / KIAA0167 / PIKECentaurin gamma3 / CRAG / FLJ16146 / MRIP-1 / MGC37541
ARFGAP1
ANKhARAP1
1 1450 aa
ArfGAPSAM PH RARhoGAPPH PHPH PH
mASAP11 1147 aa
ANKArf GAPBAR PH Pro(PxxP)3
SH3Pro(D/ELPPKP)8
100 aa
B
rArfGAP11 415 aa
Arf GAP ALPS1/2
mSMAP21 428 aa
Arf GAP CALMBD
CB
mGIT11 770 aa
ANKArf GAP PBSSHD CC
hACAP11 740 aa
ANKArf GAPBAR PH
hAGAP11 804 aa
ANKArf GAPGLD PH
Figure 1: Synonyms and representa-
tive domain structures of Arf GAPs.
A) Synonyms of Arf GAPs. Arf GAPs
were classified into two large types and
subdivided into seven subtypes based
on their overall domain structures. Syn-
onyms that have been used in literature
and databases are listed with their NCBI
Gene ID. B) Domain structures of repre-
sentative Arf GAPs. One from each sub-
type was drawn to scale. Arf GAP, Arf
GAP domain; CALM BD, CALM binding
domain; CB, clathrin box; CC, coiled-coil
domain; h, human; m, mouse; Pro (D/
ELPPKP)8, 8 tandem proline-rich (D/
ELPPKP) motifs; Pro (PxxP)3, 3 proline-
rich (PxxP) motifs; r, rat; Rho GAP, Rho
GAP domain.
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ASAPs and ACAPs contain BAR domains. The structure of
the BAR domain of Drosophila amphiphysin has recently
been solved. It was found to be a crescent-shaped dimer.
The BAR domain of amphiphysin as well as those from
other proteins including ACAP1 bind synthetic liposomes.
The efficiency of binding was inversely related to the radii of
the vesicles and directly related to the curvature. Based on
this property, the BAR domain was proposed to be a curva-
ture sensor. Recombinant BAR domains also cause defor-
mation of the liposomes, resulting in tubular structures (46).
The BAR–PH domain of ACAP1 was found to function
primarily as a curvature sensor. Similarly, a recombinant
protein comprising the BAR and PH domain of ASAP1
sensed membrane curvature. On the other hand, a recom-
binant protein comprising the BAR, PH, Arf GAP and ANK
repeat domains of ASAP1 poorly sensed membrane curva-
ture but efficiently induced tubulation of liposomes. The
tubulating activity was regulated by Arf1�GTP and the GAP
domain of ASAP1 (47). A functional relationship with the
geometry of membrane surfaces may be a common char-
acteristic of ASAPs and ACAPs, which contain BAR do-
mains, and ArfGAP1, which contains ALPS domains.
ARAPs are the largest proteins in the Arf GAP family. GAPs
in this subtype have a Rho GAP domain in addition to an Arf
GAP domain. They also contain a sterile a-motif (SAM),
five PH domains and a Ras association (RA) domain. Two
of the five PH domains contain a PI(3,4,5)P3-binding con-
sensus sequence. PI(3,4,5)P3 more potently stimulates
the Arf GAP activity of ARAPs than do other phosphoinosi-
tides (48–51). The three members of the ARAP subtype of
Arf GAPs have different Arf specificities. ARAP1 (centaurin
d1) functions with Arf1 and Arf5 (48). ARAP2 (centaurin d1/
PARX) preferentially uses Arf6, as compared with Arf1 and
Arf5, as a substrate in vitro and in vivo (50). ARAP3 (DRAG/
centaurin d3) has been reported to function as an Arf6 or
Arf5 GAP in vitro (49,51) and to regulate Arf6-dependent
events including membrane protrusions and ruffling in vivo
(49,52).
AGAPs have a GTP-binding protein-like domain (GLD) at
the N-terminus. The PH domains of AGAPs are split with
an 80-amino-acid insert between b strands 5 and 6. AGAP1
(GGAP1/centaurin g2) and AGAP2 (PIKE/GGAP2/centaurin
g1) prefer Arf1 and Arf5 to Arf6 in vitro, and function at
endosomes with Arf1 in vivo. The GAP activity of the
AGAPs is stimulated by PI(4,5)P2 and PA (53–55).
Proteins That Interact with Arf GAPs
As described, Arf GAPs are multidomain proteins. Through
these domains, Arf GAPs are able to interact with a variety
of proteins (Table 1) that we have categorized into three
groups based on function in membrane traffic, signaling or
regulation of the actin cytoskeleton. Selected interactions
are mapped in Figure 2 together with the proposed Arf
specificity of the Arf GAPs.
Membrane traffic
Transmembrane cargo proteins
Two Arf GAPs, ArfGAP1 and ACAP1, have been found to
bind directly to transmembrane proteins that can be
considered either cargo or cargo receptors. ArfGAP1 binds
to p24 cargo proteins and to ERD2, a receptor for proteins
with the ER retention signal KDEL that mediates retro-
grade transport of ER-resident proteins from the Golgi to
the ER (56). Peptides from p24 family proteins have been
found to inhibit Arf GAP activity (57). This observation was
the basis of a model explaining GAP control of cargo
sorting (58), which is described in detail in Nie and
Randazzo (26). The effect of ERD2 binding to Arf GAP1
enzymatic activity has not been examined.
ACAP1 interacts with transferrin receptor (TfR), cellubrevin
and integrin b1 (59,60). ACAP1 recognizes two distinct
diphenylalanine-based sequences in the cytoplasmic tail of
TfR. Disruption of the interaction impairs recycling of the
receptor to the plasma membrane. These observations
were the basis for the suggestion that ACAP1 may
function as novel coat or adaptor protein in the recycling
compartment. It has been proposed that ArfGAP1 func-
tions in a similar capacity, directly binding cargo to carry it
into membrane trafficking intermediates (22).
Membrane traffic coat proteins
Three classes of Arf GAPs have been found to bind to
vesicle coat proteins or coat protein adaptors. ArfGAP1 has
been found to bind to coatomer and clathrin AP1 (61,62).
The work addressing the consequences of the interaction
with coatomer is limited. In one study, coatomer was
found to stimulate Arf GAP activity (63); it has also been
reported that coatomer has only a small effect on Arf GAP
activity (64). Whether the coatomer–Arf GAP interaction
has an effect on the formation of vesicles has not been
established. Both SMAP-type GAPs bind to clathrin
(27,28). In addition, SMAP2 interacts with CALM, a clathrin
assembly protein (28). The interaction was found to drive
the formation of transport intermediates from the plasma
membrane and from the TGN. AGAP1 and AGAP2 asso-
ciate with clathrin adaptor proteins, AP3 and AP1, respect-
ively (54,55). In both cases, AGAP was found to affect the
function of the endocytic compartment containing these
clathrin adaptors. Specific molecular consequences of the
SMAP or AGAP – coat proteins interactions – have not
been determined. One possibility that has been proposed
is that the Arf GAPs function as a subunit of a vesicle coat
protein in a manner analogous to the role of Sec23 in ER-
to-Golgi transport mediated by COP-II vesicle coats (65).
Adaptor proteins involved in membrane traffic
ASAP1, ASAP2 and ARAP3 have been reported to bind to
proteins that function as part of the endocytic machinery –
CIN85, POB1 and amphiphysin IIm (42,66,67). CIN85 is an
adaptor protein containing three SH3 domains and a
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Table 1: Arf GAPs and their interacting proteins
Designation Binding protein Binding site on Arf GAP Function/remarks Reference
ArfGAP1 g-adaptin (AP1) C-terminal Unknown 62
KDEL receptor/ERD2 Unknown ER protein retrieval 56
KDEL protein recruits ArfGAP1 binding
p24a Unknown KDEL protein sorting? 94
ArfGAP3 g-COP (COPI) Unknown Golgi / ER retrograde transport? 61
SMAP1 Clathrin Clathrin box Clathrin-dependent Tfn endocytosis 27
SMAP2 CALM CALM binding domain Unknown; clathrin assembly?
Clathrin Clathrin box EE / TGN retrograde transport 28
GIT1 PIX SHD FA turnover 95
Actin remodeling
Cell spreading, migration
Centrosome maturation
PLCg SHD PLCg activation, IP3 production 69
MEK1 SHD MEK1 activation by AngII or EGF 77
FAK SHD Cell migration 75
Paxillin PBS FA turnover 86
Hic-5 PBS Paxillin-like 86
Huntingtin CC þ PBS Huntington disease pathogenesis
GPCR kinases Unknown b2AR downregulation 78
14-3-3zeta Unknown Actin remodeling 96
GIT2 PIX SHD FA turnover 87
Actin remodeling
Cell spreading, migration
Paxillin PBS FA turnover 86,87
Hic-5 PBS Paxillin-like 86
Leupaxin PBS Paxillin-like; podosome in osteoclast 88
GPCR kinases Unknown b2AR donwnregulation 79
ASAP1 CIN85 Pro (PxxxPR) EGFR recycling 66
Tumor invasion
CD2AP Pro? Unknown 37
Cortactin Pro (PxxP)? Cell migration, tumor invasion 34
Crk Pro (PxxP) Unknown 36
CrkL Pro? FA turnover 35
ASAP1 recruitment to FA
c-Src Pro (PxxP) Unknown 36
FAK SH3 Focal adhesion turnover 83
Cell spreading
Pyk2 SH3 Inhibition of ASAP1 GAP activity 84
POB1 SH3 Cell migration 67
ASAP2 Paxillin Pro? Cell migration 41
Amphiphysin IIm Pro Tac endocytosis 42
Pyk2 SH3? SEAP secretion? 37
ACAP1 NOD1/2 BAR–PH Downregulation of NFkB 90
Integrin b1 pSer around ANK Integrin b1 recycling 60
Cell migration
Tfn receptor Unknown TfR recycling 59
Cellubrevin Unknown Unknown 59
ACAP2 Vaccinia virus K1L protein Unknown Unknown 92
ARAP2 RhoA Rho GAP FA turnover 50
Stress fiber formation
ARAP3 SHIP2 SAM Unknown 74
CIN85 Pro (PxxxPR) Unknown 66
Rap1 RA Stimulation of Rho GAP activity 85
AGAP1 AP3 PH Endosome–lysosome trafficking 54
NO-sensitive soluble guanylyl cyclase PH–GAP–ANK Unknown 92
AGAP2 PLCg N-terminal (Pro) Nucleotide exchange on GLD? 70
Nuclear PI3 kinase N-terminal (Pro) Activation of nuclear PI3K 72
Protein 4.1N N-terminal (Pro) Downregulation of nuclear PI3K 72
Homer N-terminal (Pro) Coupling of mGluR and PI3K 73
Antiapoptosis in neuronal cell
Akt GLD Activation of Akt kinase activity 81
Tumor invasion
AP1 PH AP1-dependent Tfn recycling 55
CC, coiled-coil domain; NFkB, nuclear factor kappa B; SEAP, secreted alkaline phosphatase.
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proline-rich domain. CIN85 was first characterized as a
Cbl-interacting protein for epidermal growth factor (EGF)
receptor (EGFR) internalization. The SH3 domains of CIN85
interact with an atypical proline-rich motif (PXPXPR) in
ASAP1 and ARAP3 (66). Overexpression of ASAP1 accel-
erated EGF and EGFR recycling in CHO cells and HeLa
cells (47,66), although the detailed mechanism underlying
this effect is still unknown. CD2AP is a protein highly re-
lated to CIN85 that has also been found to bind to ASAP1
and has been proposed to recruit ASAP1 to the plasma
membrane (39).
The SH3 domain of ASAP1 (PAG2) mediates binding to a
proline-richmotif in the EH-domain-containing protein POB1
(67). Treatment of cells with EGF results in the phosphory-
lation of POB1 and its recruitment to the EGFR (68). POB1
simultaneously binds Ral-binding protein (RalBP), which
contains a Rho GAP domain (67). The complex of ASAP1,
POB1 and RalBP could regulate actin remodeling by control-
ling RhoA�GTP levels, thereby coordinating changes in the
actin cytoskeleton with membrane traffic.
Amphiphysin IIm is a splice variant of amphiphysin II,
which is a protein with BAR and SH3 domains. Amphiphy-
sin II functions in synaptic vesicle endocytosis. The proline-
rich domain of ASAP2 (Papa/PAG3/AMAP2) binds to the
SH3 domain of amphiphysin IIm. Both overexpression and
reduced expression (achieved using siRNA) of ASAP2
inhibit internalization of Tac, the interleukin-2 receptor
a subunit, in HeLa cells (42).
Signaling proteins
Lipid-modifying enzymes
Three types of Arf GAPs – GITs, AGAPs and ARAP3–
interact with enzymes that regulate signaling lipids. Phos-
pholipase Cg (PLCg), an important element of the PIP2 to
IP3 pathway, binds to the SHD of GIT1 (69). This interac-
tion is necessary for PLCg activation induced by angioten-
sin II (AngII) and EGF in vascular smooth muscle cells and
293 cells.
AGAP2 (PIKE/centaurin d1) is another Arf GAP that binds to
lipid metabolizing enzymes. AGAP2 has been reported to
bind to PLC g through its N-terminal proline-rich sequence
(70). In one report, PLCg was found to function as an
exchange factor for nucleotide on the GLD domain of
AGAP2 (70), although recent kinetic analyses indicate that
the affinity for nucleotide of AGAPs is such that basal
exchange rates are extremely rapid, obviating the need for
an exchange factor (71). One form of AGAP (PIKE) binds to
and activates phosphatidylinositol (PI) 3-kinase (PI3K) (72),
preventing neuronal apoptosis. The interaction with PI3K is
thought to be important for the growth and invasion of
glioblastoma cells (73).
Figure 2: Selected Arf GAPs protein complexes involved in receptor trafficking, cell migration and invasion. Arf GAPs that are
related to receptor trafficking, FA turnover, cell migration/spreading or tumor invasion are mapped with the interacting proteins and
expected substrate Arfs. The GAPs that use Arf1 or Arf6 as a substrate are labeled with blue or yellow, respectively. The GAPs whose
substrate specificity is controversial or that may use Arf5 are labeled with green.
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ARAP3, through its SAM domain, has recently been
reported to bind the PI 5-phosphatase, SHIP2 (74). The
physiological consequences of this interaction have not
been defined; however, given ARAP3 is recruited to the
plasma membrane with PI(3,4,5)P3 and its Arf GAP activity
is regulated by PI(3,4,5)P3, a plausible model is that ARAP3
negatively regulates PI3K signaling by recruiting SHIP2 to
the membrane creating a negative feedback loop.
Protein kinases
Protein kinases have been found to function upstream and
downstream of Arf GAPs. The interaction between GIT
and p21-activated kinase (PAK) (32) is one of the best
studied. It is indirect. PIX, a Rac/Cdc42 exchange factor,
acts as a bridge between GIT and PAK. Interfering with the
association between GIT and PAK has been found to
disrupt cell motility and function of FAs (75,76). The effects
of GIT on actin are thought to be mediated, in part, by the
action of PAK. GITs have also been implicated as regulators
of serine/threonine kinases within signaling pathways.
GIT1, interacts with MEK1, extracellular signal-regulated
kinase kinase. The interaction is constitutive, but GIT1
stimulates MEK activity in response to AngII and EGF
activation of Src-dependent phosphorylation of GIT (77).
GIT is an upstream regulator of PAK andMEK but functions
downstream of another serine/threonine kinase, GPCR
kinase2 (GRK2). Both GIT1 and GIT2, excluding the splice
variant GIT2-short, bind to GRK2 (78,79). GPCR kinase2 is
recruited to GPCR in response to an agonist. GITs are
recruited by GRK2 into this complex and mediate sub-
sequent internalization of the G-protein-coupled receptor.
This function of GIT depends on GIT Arf GAP activity. Point
mutants of GIT that are deficient in GAP activity block
internalization.
AGAP2 (PIKE/centaurin g1/GGAP2) has been reported to
interact with two classes of kinases. Src family proteins
phosphorylate AGAP2 on two tyrosines (80). The phosphory-
lation prevents apoptotic cleavage of AGAP2 during pro-
grammed cell death, which is consistent with the
proposed role of AGAP2 in the anti-apoptotic signaling
pathway. One signal in this pathway that is downstream of
AGAP2 is PI3K. AGAP2 also binds to and activates
a serine/threonine kinase that is critical to this pathway,
Akt (81,82). The AGAP2/Akt complex has been reported to
be dependent on GTP, although given the lack of nucleo-
tide specificity and low affinity recently reported in kinetic
studies (71); the details of the molecular mechanisms
regulating the complex are not obvious and need further
examination.
ASAP1 binds to and functions with two protein tyrosine
kinases, Src and focal adhesion kinase (FAK), including the
FAK homolog Pyk2 (35,83,84). Expression of constitutively
active Src results in the phosphorylation of ASAP1. The
SH3 domain of Src and Src family proteins bind to a PXXP
motif in ASAP1. Focal adhesion kinase binds to the SH3
domain of ASAP1. The first evidence for a role of FAK in
the cellular function of ASAP1 came from studies exam-
ining FAs (83). Disruption of the interaction resulted in
partial dissociation of a FA protein called paxillin from FAs
and changes in cell motility. Deletion of the SH3 domain
of ASAP1 also disrupted the formation of podosomes
consistent with direct binding of FAK to ASAP1 having a role
in this process; however, another protein partner cannot be
excluded on the basis of available data. The phosphorylation
of ASAP1, consequent to expression of activated Src, is
necessary for the formation of podosomes and invadopodia,
which are actin-rich structures on the ventral surface of cells
that mediate adhesion, ECM degradation and tumor inva-
sion. Both Src and Pyk2 have been found to directly
phosphorylate ASAP1, which inhibits the GAP activity for
Arf1 (84). A relationship between the effect of phosphory-
lation on GAP activity and podosome formation has not
been examined to the best of our knowledge.
Small G proteins
Members of other G-protein families, in addition to Arf,
function with Arf GAPs to regulate remodeling of the actin
cytoskeleton. ARAP family Arf GAPs function with Rho and
Rap family proteins in at least two capacities to regulate
actin and actin-associated structures (49,52,85). ARAP1 and
ARAP3 contain active Rho GAP domains that use RhoA as
a substrate in preference to Rac1 and Cdc42. Effects of
ARAP1 and ARAP3 on the actin cytoskeleton are dependent
on the Rho GAP activity, presumably functioning to inacti-
vate RhoA. ARAP2 has an inactive Rho GAP domain,
consequent to lack of the catalytic arginine found in all other
Rho GAPs; however, ARAP2 does bind RhoA�GTP through
its inactive Rho GAP domain. RhoA binding to ARAP2, as
well as ARAP2Arf GAP activity, is required for FA and stress
fiber formation in U118 glioblastoma cells, consistent with
ARAP2 function as a RhoA effector (50).
The ARAPs also contain an RA domain immediately
C-terminal of the Rho GAP domain. Rap1 binds to the RA
domain of ARAP3 and regulates the Rho GAP activity.
Regulation of peripheral actin ruffles that are regulated by
ARAP3 depend on the ability of ARAP3 to bind to Rap1
(52,85).
Actin cytoskeleton
Adhesion and scaffold molecules
The GITs and the ASAPs have been found to regulate FAs
and ASAPs have also been implicated in the regulation of
invadopodia and podosomes. Consistent with this func-
tion, interacting proteins that are components of these
adhesive structures have been identified. Three Arf GAPs,
GIT1, GIT2 and ASAP2 (PAG3/AMAP2), have been re-
ported to interact with paxillin and related proteins, hic-5
and leupaxin (41,79,86–88). Paxillin is an adaptor protein
often used as a marker of FAs that functions in the
transduction of signals mediated through growth factor
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receptors and integrins. Paxillin regulates FA dynamics
and, as a consequence, cell migration, spreading and
adhesion. The LD4 motif in paxillin binds to the SHD of
GIT. Interfering with GIT association with paxillin results in
altered FAs and accelerated cell migration.
Crk and CrkL are adaptor proteins that may contribute to
ASAP1 function in FAs and membrane ruffles (35,36). CrkL
is SH2- and SH3-domain-containing protein that binds to
paxillin and Cas at FAs. Two PXXP motifs in ASAP1
mediate binding to Crk and CrkL. The interaction was
found to be necessary for ASAP1 association with FAs (35).
ASAP1 (AMAP1/PAG2) has also been reported to associ-
ate with cortactin, a multidomain protein with N-terminal
acidic, actin-binding, proline-rich and SH3 domains. Cor-
tactin is found in peripheral membrane ruffles and invado-
podia. The SH3 domain of cortactin was found to bind to
a proline-rich motif specific to one splice variant of ASAP1
(34). Subsequent work showed that the SH3 domain of
ASAP1 had a more dominant role in forming the complex
than the splice-variant specific proline-rich motif. Both
ASAP1 and cortactin associate with invadopodia in inva-
sive breast cancer cell lines. Furthermore, disruption of the
ability of ASAP1 to form a complex with cortactin inter-
feres with the formation of invadopodia and structurally
related podosomes (34). ASAP1 expression correlates
with the invasive potential of uveal melanoma cells and
mammary carcinoma cells. Based on these findings, the
ASAP1/cortactin complex has been proposed to function
as a part of an invasive machinery in cancer cells. In
a recently described model, the ASAP1/cortactin complex
links the highly tubulated membranes found in invadopodia
and podosomes to polymerized and branched actin (89).
Miscellaneous proteins
Arf GAPs have been found to bind to a number of proteins
that are not clearly associated with changes in actin or
membranes. ACAP1 (centaurin b1) and ACAP2 (centaurin
b2) have been reported to interact with bacteria-derived
intracellular peptidoglycan sensor proteins, NOD1 and
NOD2, and vaccinia virus protein KILT, respectively (90,91).
AGAP1 associates with nitric oxide (NO)-sensitive soluble
guanylyl cyclase through N-terminal GLD region (92).
Arf GAPs as Regulated Signaling Platforms
Although the roles of Arf GAPs as adaptors or scaffolds
for signaling proteins and as elements of signaling path-
ways have been described for GITs, ARAPs, AGAPs
(PIKE) and ASAPs, the mechanisms by which the distinct
activities of each domain of Arf GAPs may be integrated
have not been elucidated. Recent findings in studies of
ASAP1 (34,47) provide a basis to speculate about mech-
anisms by which integration to control a particular cellular
activity is achieved. We propose a model in which ASAP1
functions as a regulated signaling platform to control the
dynamics of invadopodia and podosomes. These struc-
tures are labyrinths of tubulated membranes associated
with polymerized actin (8). The BAR, PH and Arf GAP
domain of ASAP1 bind to PIP2 and Arf�GTP to induce
membrane tubulation (47). In this way, ASAP1 could be
considered an Arf effector. ASAP1 must be phosphory-
lated on tyrosine, dependent on the nonreceptor tyrosine
kinase Src, to function at podosomes. Thus, ASAP1
integrates three signals – Arf�GTP, PIP2 and Src. ASAP1
associates with the tubulated membranes and may
undergo conformational changes leading to additional
protein–protein interactions (47). ASAP1 binds cortactin,
which induces actin polymerization though interaction
with Arp2/3 and binds to filamentous actin (34). ASAP1
would thus link polymerized actin to the tubulated mem-
branes. ASAP1 binds FAK (83) and Src (36), tyrosine
kinases important to the formation and maintenance of
invadopodia and podosomes. The adaptor protein Crk
bound to ASAP1 has the potential of bringing other signaling
proteins into the complex (35). The association with POB1/
RalBP could control Rho�GTP levels (67), also important for
maintenance of invadopodia. The ASAP1-dependent com-
plex could be rapidly controlled: GAP activity of ASAP1 is
robust and, maintenance of the complex on the tubulated
membranes would depend on continued generation of
Arf�GTP. At other sites, with different signals, ASAP1 could
bind a different group of proteins, resulting in a different
output. For instance, ASAP1 in FAs does not bind cortactin.
Thus, rather than a simple scaffold or adaptor, ASAP1would
function as a multiplexer, providing a unique output for
a particular set of inputs. Thismodel may generalize to other
multidomain Arf GAPs, such as ARAPs or AGAPs. The idea
that Arf GAPs could function as Arf effectors could extend
to simpler Arf GAPs, as suggested for yeast Arf GAPs (93).
Conclusions and Perspective
Arf GAPs are structurally complex proteins. Each has GAP
activity, inducing hydrolysis of GTP bound to Arf. Some of
the functions of Arf GAPs in the regulation of actin and
membranes are attributable to the GAP activity. However,
Arf GAPs affect actin and membranes through additional
mechanisms. In this review, we cataloged GAP-associated
proteins and described potential mechanisms by which
they may contribute to the effects of Arf GAPs on actin or
membranes. The Arf GAPs also directly interact with lipids,
described in Nie and Randazzo (26), to affect the structure
of biological membranes. One challenge at this time is to
understand how protein and lipid association with Arf
GAPs and GAP activity are integrated to coordinate
changes in the actin cytoskeleton and membranes neces-
sary for biological behaviors such as cell migration and
pathological behaviors such as cancer cell invasion. We
speculate in this review about mechanisms of integration
for ASAP1, suggesting that ASAP1 functions as a regulated
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signaling platform similar to a multiplexer. Ongoing struc-
tural studies focused on the functional relationships
between domains within single Arf GAPs will be important
for understanding the molecular basis of integration of the
distinct activities associated with specific Arf GAPs.
Acknowledgments
This work was supported by the Intramural Research Program of the
National Cancer Institute, Department of Health and Human Services. We
apologize to authors whose work may have been omitted due to restric-
tions in the length of the review, or Paul Randazzo’s or Hiroki Inoue’s
oversight.
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