mousegenomes tk-wtsi (1)

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Anthony Doran

129S5SvEvBrd

C57BL/6NJ

Genome Assembly

UCSC Gene Transmap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

Genomebrowsers

HAVANA/Gencode

Strain PE>40x 3kb 6kb 10kb 40kb 205kb Optical map

PacBio WGS

RNA-Seq PacBio cDNA

129S1/SvImJ

A/J

AKR/J

BALB/cJ

C3H/HeJ

C57BL/6NJ

CAST/EiJ

CBA/2J

DBA/2J

FVB/NJ

LP/J

NOD/ShiLtJ

NZO/HlLtJ

PWK/PhJ

SPRET/EiJ

WSB/EiJ

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Strain Length N50 Largest129S1/SvImJ 2,665,724,978 499,579 4,191,204A/J 2,575,552,050 841,310 5,154,006AKR/J 2,655,151,486 699,281 4,946,368BALB/cJ 2,564,864,798 719,223 6,377,193C3H/HeJ 2,652,482,740 830,262 5,460,279C57BL/6NJ 2,767,519,225 1,376,403 10,647,821CAST/EiJ 2,692,265,825 644,585 4,753,688CBA/J 2,869,046,919 1,001,488 6,693,851DBA/2J 2,535,344,396 497,937 5,792,774FVB/NJ 2,489,840,365 231,286 2,492,086LP/J 2,700,733,552 1,501,450 7,674,081NOD/ShiLtJ 2,916,136,958 833,100 7,603,243NZO/HlLtJ 2,629,894,720 455,398 3,441,695PWK/PhJ 2,536,513,388 390,965 4,057,411SPRET/EiJ 2,665,852,857 361,121 2,821,169WSB/EiJ 2,667,768,295 783,034 5,847,529

Genome Assembly

UCSC Gene Transmap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

UCSCEnsembl

HAVANA/Gencode

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Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

UCSCEnsembl

HAVANA/Gencode

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Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong

Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong

Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

UCSCEnsembl

HAVANA/Gencode

RNA-Seq

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Mario StankeStefanie König

Mario StankeStefanie König

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

UCSCEnsembl

HAVANA/Gencode

RNA-Seq

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

UCSCEnsembl

HAVANA/Gencode

RNA-Seq

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

Genomebrowsers

HAVANA/Gencode

RNA-Seq

Genome Assembly

UCSC Gene TransMap Augustus

Geneset Integration

Manual Annotation

Genome Alignments

UCSC/Sanger

UCSC University Greifswald

Genome browsers

HAVANA/Gencode

Ensembl/UCSC

RNA-Seq

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2014-2017

2015-2018