mousegenomes tk-wtsi (1)
DESCRIPTION
Mouse Genomes Project talk at IMGC 2014TRANSCRIPT
![Page 1: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/1.jpg)
![Page 2: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/2.jpg)
➢
➢
➢○○○
➢○
➢
Anthony Doran
![Page 3: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/3.jpg)
129S5SvEvBrd
C57BL/6NJ
![Page 4: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/4.jpg)
![Page 5: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/5.jpg)
![Page 6: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/6.jpg)
![Page 7: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/7.jpg)
![Page 8: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/8.jpg)
![Page 9: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/9.jpg)
Genome Assembly
UCSC Gene Transmap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genomebrowsers
HAVANA/Gencode
![Page 10: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/10.jpg)
Strain PE>40x 3kb 6kb 10kb 40kb 205kb Optical map
PacBio WGS
RNA-Seq PacBio cDNA
129S1/SvImJ
A/J
AKR/J
BALB/cJ
C3H/HeJ
C57BL/6NJ
CAST/EiJ
CBA/2J
DBA/2J
FVB/NJ
LP/J
NOD/ShiLtJ
NZO/HlLtJ
PWK/PhJ
SPRET/EiJ
WSB/EiJ
![Page 11: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/11.jpg)
➢
➢○
➢○○
➢○○
➢
![Page 12: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/12.jpg)
Strain Length N50 Largest129S1/SvImJ 2,665,724,978 499,579 4,191,204A/J 2,575,552,050 841,310 5,154,006AKR/J 2,655,151,486 699,281 4,946,368BALB/cJ 2,564,864,798 719,223 6,377,193C3H/HeJ 2,652,482,740 830,262 5,460,279C57BL/6NJ 2,767,519,225 1,376,403 10,647,821CAST/EiJ 2,692,265,825 644,585 4,753,688CBA/J 2,869,046,919 1,001,488 6,693,851DBA/2J 2,535,344,396 497,937 5,792,774FVB/NJ 2,489,840,365 231,286 2,492,086LP/J 2,700,733,552 1,501,450 7,674,081NOD/ShiLtJ 2,916,136,958 833,100 7,603,243NZO/HlLtJ 2,629,894,720 455,398 3,441,695PWK/PhJ 2,536,513,388 390,965 4,057,411SPRET/EiJ 2,665,852,857 361,121 2,821,169WSB/EiJ 2,667,768,295 783,034 5,847,529
![Page 13: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/13.jpg)
Genome Assembly
UCSC Gene Transmap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
![Page 14: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/14.jpg)
➢○
➢○
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
![Page 15: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/15.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
![Page 16: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/16.jpg)
➢
➢
➢
➢
➢
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
![Page 17: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/17.jpg)
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
![Page 18: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/18.jpg)
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
![Page 19: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/19.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
![Page 20: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/20.jpg)
➢○
➢○○
➢○○
➢○
○
Mario StankeStefanie König
![Page 21: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/21.jpg)
Mario StankeStefanie König
![Page 22: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/22.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
![Page 23: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/23.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
![Page 24: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/24.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genomebrowsers
HAVANA/Gencode
RNA-Seq
![Page 25: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/25.jpg)
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genome browsers
HAVANA/Gencode
Ensembl/UCSC
RNA-Seq
![Page 26: Mousegenomes tk-wtsi (1)](https://reader036.vdocuments.site/reader036/viewer/2022070323/5599f2261a28ab7e558b45c0/html5/thumbnails/26.jpg)
➢○○
➢○
➢○
➢○
➢○
➢○
➢
➢
2014-2017
2015-2018