2018 gulf of mexico oil spill & ecosystem science conference · 2018. 2. 28. · 2018 gulf of...

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DIVER Application: Common Data Models for Data Integration 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference Ben Shorr and Nick Eckhardt NOAA - NOS - Office of Response & Restoration Marti Goss & Mike Peccini NOAA - NMFS – Office of Habitat Conservation Dan Hudgens, Ann Jones, Neal Etre, Kate Doiron IEc Inc.

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Page 1: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

DIVER Application: Common Data Models for Data

Integration

2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference

Ben Shorr and Nick EckhardtNOAA - NOS - Office of Response & Restoration

Marti Goss & Mike PecciniNOAA - NMFS – Office of Habitat Conservation

Dan Hudgens, Ann Jones, Neal Etre, Kate DoironIEc Inc.

Page 2: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Marsh Assessment

Oyster Collections

Telemetry Data

Shoreline Data

Water Column

Seafood Safety

Marine Mammal & Turtle Assessment

Toxicity Data

DWH Damage Assessment Data

• 20,000+ trips for field data collection

• 1 million+ field data forms and related electronic files

• 100,000+ water, tissue, oil and sediment samples

• 15 million+ database records • 30 terabytes of data• Data Referenced in many

Publications/Journals

Page 3: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Overview

DIVER (Data Integration, Visualization, Exploration, and Reporting)

DIVER is a data warehouse and queryapplication. The DIVER approach integratesstandardized datasets so users can query

across data holdings and download information and results.

Page 4: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

http://www.gulfspillrestoration.noaa.gov/

Injury Assessment Data

Administrative Record

https://www.diver.orr.noaa.gov

Page 5: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

What is DIVER?

Processing Data Warehouse Data Access

• Query / Download• Visualization• Reporting / Analytics• Public access / Sharing• Publications (Papers)• Collaboration

Collates, standardizes and transforms

source dataStores and serves

integrated data

Page 6: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Protocols and Standards

Field Forms(Data) Transcribe

Data Integration

Electronic Data

Page 7: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

File Collections

Metadata

Unstructured Data

Structured Data

Metadata

Digital DataForm

Metadata

Metadata

.CSV

Core

fiel

ds

Projects

Photographs

Telemetry

Ocean Data

Field Measurements/Observations

Bioassay

Samples

Metadata

Page 8: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Common Data Models

Projects

Photographs

Telemetry

Ocean Data

Field Measurements/Observations

Data type specific models (Data Categories)

• Samples: Chemistry, biological+

• Bioassay: Toxicity testing and results

• Field Measurements and Observations:

shoreline, marsh, birds and mammals;

biological data, oil thickness

• Oceanographic: Cruise-collected sensor data

• Telemetry: Whales, dolphins, turtles, tuna

• Photography: Geolocation, Keywords

• Restoration data: Project tracking data

Core

fiel

ds

Bioassay

Samples

Page 9: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Common Data Model(example)

Workgroup| Workplan | Data Source | Matrix | Location | Date | Form | Station |

Sample ID…

Samples

Analysis Units Depth

Bioassay

Species Endpoint Duration

Core Fields

Data Category

Detail Fields

Page 10: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Environmental Data Specification

Data Categories

Core Fields

Detail Fields

Valid Values

Data Submission

Data Access

References/Appendices

Public DIVER website: https://www.diver.orr.noaa.gov

Page 11: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Field Forms, Data Templates and Guidelines

Page 12: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

DIVER Data TemplatesElectronic Data Deliverables

• Chemistry and Bioassay (Toxicity)

Labs: Electronic Data Deliverables (EDDs)

• Chemistry• Bioassay (Toxicity)• Biological Data• Field Measurements and Observations

Data Providers: Electronic Data Deliverables (EDDs)

Guidance, Study Notes and Template “Tester”

• Photos Database (NOAA Photologger)• Shoreline Cleanup Assessment Techniques (SCAT)

Additional Templates

Page 13: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Field Measurements and Observations

• Biological– Density, Productivity, Composition

• Benthic• Physical Parameters/Observation

Page 14: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Restoration Data• $8.8 billion settlement paid

out over 15 years • Funds allocated to 7 Trustee

Implementation Groups (TIGs) across 15 resource types

• Projects will be implemented by 17 trustee agencies

• Commitment to data-driven adaptive management

Project details, activities & status

Locations Environmental compliance

Budget, receipts & expenditures

Monitoring Accomplishments

Page 15: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Monitoring and Adaptive Management Standards

Page 16: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Restoration Monitoring Data

Page 17: 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference · 2018. 2. 28. · 2018 Gulf of Mexico Oil Spill & Ecosystem Science Conference. Ben Shorr and Nick Eckhardt. NOAA -

Because, Data.