Gene symbBKL descri probe set Accession LocusLink A549 ContrA549 ResveA549 ResveA549 ResveTIGD4 Member of 1552522_aNM_14572 201798 8.43 5.52 2.89 1.12CYP1B1 Cytochrome202435_s_aAU154504, 1545 1714.76 843.297 830.003 828.027IGF2BP1 Insulin lik 223689_at,AF198254, 10642 1154.54 660.6 655.17 617.26OSGEPL1 Member of 230032_at,AW130077 64172 526.74 305.88 293.65 300.22DLEU2 Synthetic 216870_x_AF264787 79469 648.71 352.5 403.71 368.37SH3YL1 Protein wit204019_s_aNM_01567 26751 242.06 154.3 125.9 138.09ZCCHC7 Zinc finger 230332_at AA872187 84186 190.05 123.13 109.82 97.85SOX2 SRY-relate 228038_at AI669815 6657 511.51 306.23 299.28 286.27HIST1H1C Histone clu209398_at,BC002649, 3006 1494.75 927.65 861.27 892.82ASH1L Ash1-like; 222667_s_aAI806500, 55870 947.67 594.41 585.65 543.31EN1 Engrailed 220559_at,NM_00142 2019 256.11 141.41 197.54 130.88UPP1 Uridine pho203234_at NM_00336 7378 1510.29 951.35 915.72 916.6GNAI3 Guanine nuc201181_at NM_00649 2773 494.26 312.91 306.78 296.45NRIP1 Nuclear rec202599_s_aNM_003489 8204 1870.16 1197.14 1100.31 1198.41TGIF1 TGFB-induce1566901_atAL832409, 7050 608.23 389.31 371.89 381.97EZH1 Enhancer of211310_at,AB004818, 2145 147.54 92.62 108.43 79.87XRCC5 Ku86 autoan232633_at,AW022681, 7520 107.5 67.5 62.82 72.03AREG Amphireguli205239_at NM_00165 374 2482.2 1558.08 1580.68 1546.77CCDC121 Protein of 220321_s_aNM_02458 79635 271.92 169.24 186.55 156.1COL1A1 Collagen ty1556499_sBE221212 1277 282.75 191.6 177.23 170.45BMPR1B Bone morpho229975_at,AI826437, 658 637.38 391.03 377.09 390.92BCL3 B cell CLL 204908_s_NM_00517 602 1103.53 665.85 755.17 704.06C19orf2 RPB5-mediat222266_at,BF796940, 8725 792.99 554.41 475.68 494.86FUS Fusion (inv 200959_at,NM_004960 2521 3194.12 2152.39 2050.85 2144.11LEPR Leptin rece209894_at,U50748, U 3953 238.38 134.375 183.925 136.57KYNU kynureninas210662_at,BC000879, 8942 161.095 113.92 107.905 100.05DDX39 DEAD box p201584_s_aNM_005804 10212 2319.47 1477.83 1550.05 1474.05LONP1 Lon peptid 209017_s_U02389 9361 1628.35 1103.8 995.98 1049.93SSBP4 Single stra 223226_x_BC000274 170463 1212.28 814.92 793.79 728.27MLL5 Mixed linea223189_x_aAW082219, 55904 988.31 677.613 627.043 642.507ZNF507 Protein con226327_at,N64593, N 22847 1212.19 813.88 797.41 755.59ZNF624 Member of 232272_at,BF435259, 57547 197.27 123.47 130.02 128.72NR0B1 Nuclear rec206644_at,NM_00047 190 1583.38 1083.47 1017.68 1025.86ZNF638 Zinc finger 239243_at,AA279654, 27332 864.933 677.105 604.559 613.045FPGT Fucose-1-p205140_at,NM_00383 8790 717.58 462.99 467.24 478.22SIM2 Single-mind206558_at NM_00506 6493 384.43 260.13 258.21 232.42UFM1 Ubiquitin-f 242669_at,BF514975, 51569 355.87 227.65 245.09 224.35VAMP4 Vesicle-ass 211760_s_BC005974 8674 270.42 151.03 189.57 184.99FILIP1 Protein wit231945_at,AK001570, 27145 366.397 296.403 276.023 292.517HES1 Hairy and e203394_s_aBE973687, 3280 490.76 323.03 340.425 313.5ANKRD36 Protein con214723_x_AB046861 57730 247.56 181.26 143.57 163.38CCDC88A Coiled coil 1562648_aBC035848, 55704 126.98 82.12 87.53 80.65CHD1L Chromodomai238070_at,AA573217, 9557 252.83 169.72 170.8 156.05HELLS Helicase ly 220085_at,NM_01806 3070 779.89 534.18 494.63 506.3IQGAP2 IQ motif co203474_at NM_00663 10788 382.2 224.46 307.09 224.08KDM3A Lysine K-sp212689_s_aAA524505, 55818 995.03 676.01 665.37 623.77LOC400987Synthetic 214723_x_AB046861 57730 247.56 181.26 143.57 163.38

MCM5 Mini chromo201755_at,NM_006739 4174 1117.44 724.955 746.04 741.305SNAPC3 Small nucle229712_at AI066599 6619 262.67 167.38 188.08 164.9AKT3 Homolog 3 o212607_at,N32526, U 10000 735.406 485.854 523.978 491.584ID4 Inhibitor o 209291_at,AW157094, 3400 573.713 348.677 395.183 380.68BCCIP BRCA2 and C218264_at,NM_016567 56647 595.195 405.935 382.95 370.45FIGN Protein wit242828_at,BG109695, 55137 284.86 193.33 197.54 180.33GALNT13 UDP-N-acet234472_at AC009227 114805 558.23 346.48 468.14 295.28PAK1IP1 PAK1 intera218886_at NM_01790 55003 861.17 576.26 595.63 548.52SETD5 Member of 221806_s_aBF590997, 55209 932.513 643.067 626.047 604.193FAM119A Protein of 235177_at AI625022, 151194 794.215 623.91 572.41 595.86PRMT3 Protein arg213320_at,AL551971, 10196 1629.07 1061.55 1144.35 1067.82TFDP1 Transcripti 242939_at,AI950069, 7027 578.52 395.57 379.07 391.6KPNA3 Karyopherin221502_at,AL120704, 3839 1967.38 1388.47 1328.34 1322.97CNTNAP3 Contactin 233202_at AI433163 389725 268.64 173.69 197.74 174.53HMGB1L1 Protein wi 224734_at,N92507, N 3146 826.34 535.51 589.5 554.97LOC441402Synthetic 223796_at,AF333769, 389730 780.595 523.39 549.825 510.78TACC2 Transformin202289_s_aNM_006997 10579 1882.05 1311.76 1250.82 1276.07ID2 Inhibitor o 201565_s_aNM_002166 3398 2368.27 1558.95 1641.68 1606.53NARG1 NMDA recept219158_s_aNM_025085 80155 870.187 679.26 517.59 581.22ANKRD12 Ankyrin re 212286_at,AW572909, 23253 353.585 233.205 258.132 227.863SFRS6 Splicing fa 206108_s_aNM_006275 6431 413.18 313.4 257.97 266.34ID1 Inhibitor o 208937_s_D13889 3397 4695.53 3088.93 3239.72 3268.71LOC285074Synthetic 230588_s_aAA906142, 285074 440.53 299.66 306.7 292.11TCERG1 Transcripti 202396_at NM_00670 10915 1773.61 1221.17 1209.55 1190.96ZNF292 Protein wit212366_at,BF223237, 23036 431.67 305.35 289.3 290.01LRPPRC Leucine ric 1557360_atCA430402, 10128 647.12 444.82 446.01 441.32MED16 Mediator co43544_at AA314406 10025 225.59 154.49 161.88 145.69RECQL5 RecQ prote1561720_atBC042989, 9400 70.92 51.23 49.21 45.99SECISBP2 SECIS bindi224250_s_aBC001189, 79048 1021.77 734.71 704.86 665.58TIA1 T-cell-rest 1554889_atBC015944, 7072 151.67 94.52 131.59 86.75WDSUB1 Protein co 226668_at W80623 151525 586.73 440.55 382.31 384.66LRP8 Low density205282_at,NM_004631 7804 834.25 572.075 552.03 580.85AUH AU RNA bin205052_at NM_00169 549 861.46 609.95 576.59 592.07BNIP2 BCL2adenovi226280_at AA133277 663 1334.13 932.02 904.04 921.58INHBB Inhibin bet 205258_at NM_00219 3625 862.33 612.14 584.09 590.16LIG3 Ligase III 207348_s_aNM_002311 3980 567.6 396.89 396.64 383.38NEBL Nebulette; 203962_s_NM_00639 10529 571.35 411.58 378.83 392.95NTHL1 Nth endonuc209731_at,U79718, U 4913 624.47 430.5 436.15 427.12RPL13 Ribosomal p1565759_aBG396520 6137 249.39 196.06 179.88 139.89SP4 Sp4 transcr236265_at,BF438799, 6671 615.75 389.02 469.1 410.79SREBF1 Sterol regu202308_at NM_00417 6720 2013.88 1384.24 1430.03 1353.49TFPI Tissue fact 209676_at,J03225, AF 7035 1142.2 817.915 802.955 785.82GCLC Glutamate-202922_at,BF676980, 2729 2936.11 1880.63 1919.13 1882.09GTF2H2B 215470_at,U21915, U 2966 420.36 296.31 298.12 283.16GTF2H2C Synthetic 215470_at,U21915, U 2966 420.36 296.31 298.12 283.16SGK1 Serum-gluco201739_at,NM_00562 6446 1859.86 1322.99 1278.14 1264.86TBX18 T-box 18; a1559840_sBC040697, 9096 236.39 163.63 165.24 162.56TCF12 Transcripti 215611_at,AU146580, 6938 223.01 161.485 156.435 149.185

ZFY Zinc-finge 207247_s_aNM_00341 7543 214.69 157.1 144.69 144.53EIF4E Eukaryotic 201435_s_aAW268640, 1977 1758.39 1355.66 1347.87 1300.31ANP32E Protein wit208103_s_aNM_03092 81611 2485.8 1679.15 1801.93 1740.09ATXN1 Ataxin 1; a 203232_s_aNM_000332 6310 153.035 105.33 99.105 99.54CLASP1 Cytoplasmic240757_at,H49240, H 23332 463.5 337.44 328.34 305.04COMMD9 COMM domai218072_at NM_01418 29099 1072.57 727.67 788.11 725.46DYRK1A Dual-speci 209033_s_aD86550, D 1859 1145.67 825.62 800.65 786.5EMP2 Epithelial 1566603_sAK094587, 285367 133.98 96.07 91.9 94.66FOXA2 Forkhead bo210103_s_aAB028021, 3170 1044.8 761.28 713.25 714.235NRP1 Neuropilin 210510_s_aAF145712, 8829 1171.11 790.663 806.407 767.763PYROXD1 Hypothetic213878_at,AI685944, 5965 1233.58 775.64 1104.8 716.39RPUSD3 Member of 1566603_sAK094587, 285367 133.98 96.07 91.9 94.66WHSC1L1 Wolf-Hirsc 218173_s_NM_01777 54904 347.59 211.53 300.61 216.49ZFP1 Protein wit226807_at,AL038511, 162239 1083.3 666.61 968.9 637.16CPEB4 Protein wit224828_at,AV704132, 80315 397.537 334.433 300.56 292.763RB1CC1 RB1 inducib202033_s_aBG402105, 9821 1475.12 1043.67 1045.38 1014.18RPS6KB1 Ribosomal p204171_at,NM_003161 6198 1290.73 922.37 921.663 894.837RBM14 RNA binding204178_s_aNM_006328 10432 1326.91 924.908 984.361 900.983TLK1 Tousled lik 202606_s_aNM_012290 9874 1091.03 767.933 768.69 726.783C2orf76 Protein of 227840_at AA738440 130355 500.38 363.33 341.53 357.37DBF4 DBF4 homol204244_s_NM_00671 10926 1816.21 1295.23 1276.39 1274.09DNM2 Dynamin 2; 202253_s_aNM_004945 1785 833.09 554.88 632.78 567.24HNRNPA2BHeterogene225107_at,AI963008, 3181 2035.58 1464.17 1562.84 1584SUZ12 Suppressor 1566191_aAI907884, 23512 187.34 125.34 129.43 143.42ATAD2B Member of t213387_at,AB033066, 54454 246.995 169.19 164.425 176.82EYA4 Eyes absen207327_at,NM_004100 2070 690.935 463.78 546.07 462.525LRP6 Low densit 205606_at,NM_002336 4040 1697.3 1132.39 1442.55 1093.93WWP2 WW domain c204022_at,AI668780, 11060 636.263 422.2 568.327 410.773GNL3 Guanine nuc217850_at,NM_01436 26354 2237.65 1591.68 1585.11 1569.89GTF2A1 General tra225433_at AU144104 2957 1215.29 907.54 873.94 807.22NBAS Neuroblast202926_at,NM_01590 51594 833.41 588.84 600.52 584.18NUP153 Nucleopori202097_at,NM_005124 9972 1077.62 784.545 765.22 761.255PCGF2 Polycomb gr203792_x_BC004858 7703 707.3 506.2 508.17 487.37RBM12 RNA bindin212168_at,AL514547, 10137 2046.08 1442.62 1464.07 1455.94HNRNPH1 Heterogeneo213470_s_aBF983406, 3187 715.195 510.127 505.362 473.242ZNF281 Zinc finger 218401_s_aNM_012482 23528 1883.68 1415.63 1307.9 1288.03MTMR2 Myotubular203211_s_aAK027038, 8898 1105.44 817.02 760.215 770.415SDCCAG10 Protein con223337_at AF039693, 10283 999.39 722.965 678.27 667.75TMPO Thymopoieti209753_s_aBG391171, 7112 1724.43 1275.58 1169.62 1236.05G2E3 G2-M phase 223254_s_aAA887053, 55632 803.52 601.158 568.954 552.312EIF4G3 Eukaryotic 201935_s_aAI768122, 8672 639.417 489.113 449.743 443.48FAF1 Fas associa218080_x_aNM_007051 11124 1332.37 955.885 994.48 916.655IGFBP3 Insulin-lik 210095_s_aM31159, B 3486 3314.49 2383.38 2426.36 2355.09MDM4 MDM4 Mdm4 p205655_at,NM_002393 4194 811.303 598.767 544.918 582.915MRPL1 Mitochondr223154_at AF212225 65008 1526.94 1093.93 1076.86 1091.31MTIF3 Mitochondri223356_s_aBG529919, 219402 1503.51 1125.1 1035.51 1069.78PAPOLA Poly(A) po 209388_at,BC000927, 10914 1825.21 1365.81 1322.54 1309.54PMM2 Phosphoman203201_at NM_00030 5373 1598.37 1141.1 1134.1 1146.28

PTPN12 Protein ty 202006_at,NM_002835 5782 1548.8 1185.04 1155.07 1161.43SOCS6 Suppressor 227542_at AU157543 9306 997.98 714.85 727.23 688.02TAF4B TAF4b RNA p235020_at AI366784 6875 333.67 244.7 231.47 234.66C2orf3 Chromosome 216305_s_aAC005034, 6936 479.56 347.97 354.92 322.53EHBP1 EH domain 212650_at,BF116032, 23301 1831.41 1260.98 1339.52 1282.74SFRS1 Splicing fa 201741_x_aM69040, M 6426 2329.9 1755.2 1763.81 1762.31USP3 Ubiquitin s 221654_s_aAF077040, 9960 1781.27 1243.74 1282.9 1227.66KAT5 K(lysine) a 206689_x_aNM_006388 10524 657.44 467.475 502.535 444.95ARL17P1 Synthetic 210718_s_AF119889 51326 431.41 273.7 416.51 240.48CCNYL1 Protein con228810_at AW135279 151195 1225.57 889.68 859.23 893.41CNOT2 CCR4-NOT t222182_s_BG105204 4848 1452.6 979.28 1095.86 1064.34DHRS3 Short-chai 202481_at NM_00475 9249 1880.18 1348.33 1425.19 1287.15DLG1 Discs large 217208_s_aAL121981, 1739 443.095 286.695 395.57 256.46DOCK1 Dedicator o203187_at NM_00138 1793 945.89 654.22 725.3 671.14EIF2C2 Eukaryotic 225827_at AI832074 27161 649.39 504.55 428.39 472.84IGF1R Insulin-lik 203628_at H05812 3480 965.59 752.78 647.18 680.68LOC284952 1557267_sBF513233, 284952 414.82 292.18 309.18 290.48MAP3K8 Mitogen act235421_at AV713062 1326 349.76 271.35 238.91 246.09MLLT10 Myeloid-lym205408_at,NM_004641 8028 634.457 455.967 462.71 449.683NUP88 Nucleoporin202900_s_NM_00253 4927 2024.59 1471.67 1475.39 1434.02RBM27 Member of t225326_at,AB037732, 54439 1253.84 921.99 861.27 921.53SCARA5 Protein wit229839_at AI799784 286133 341.8 264.49 235.93 238.75SSBP2 Single-stra 203787_at NM_01244 23635 193.69 131.02 144.87 140.51ZMYM2 Zinc finger 210282_at AL136621 7750 58.65 45 40.36 40.17BPTF Bromodomai207186_s_aNM_004459 2186 1117 849.967 801.01 754.62CBX3 Chromobox h201091_s_aBE748755, 11335 2194.66 1737.53 1825 1826.29GRLF1 Glucocortic202045_s_aAI670100, 2909 882.485 630.395 595.632 634.482STAG1 Stromal ant202293_at,AW168948, 10274 688.4 503.675 490.325 509.18ADNP ADNP homeo201773_at,NM_015339 23394 1902.66 1387.58 1417.25 1361.36MTUS1 Mitochondr212093_s_aAI695017, 57509 2408.92 1741.08 1710.11 1728.01NR1H3 Nuclear rec217370_x_aS75762, BE 3101.08 2389.76 1568.54 1396.74 1581.15FMNL2 Formin-lik 226184_at,AI123567, 114793 1292.06 994.83 877.62 918.87HNRPDL Heterogene201993_x_aNM_005463 9987 3657.02 2706.93 2725.09 2667.51ATP7A ATPase Cu+205197_s_BE567813 538 1268.71 824.41 1125.2 802.31TBC1D8 TBC1 domai241017_at AA779927 11138 187.05 117.31 146.36 142.55TOM1L1 Target of m240261_at AA913079 10040 1052.06 817.58 744.4 732.55XRCC4 X ray repai 205072_s_aNM_022406 7518 549.095 402.1 392.895 392.82ZFP91 Zinc finger 224631_at,AA758013, 80829 1373.83 1038.08 1017.43 1029.15CPS1 Carbamyl p204920_at,AF154830, 1373 641.44 454.91 490.455 464.365GIN1 Protein of 219467_at NM_017676 54826 493.95 360.125 378.83 361.82RAB10 RAB10 memb222980_at,AL136650, 10890 6724.84 4904.51 4935.7 4957.12ACP1 Acid phosp201629_s_aBE872974, 52 2155.6 1546.86 1579.88 1597.78CBLL1 Cas-Br-M ec220018_at NM_02481 79872 588.84 373.57 477.6 431.34CTDSP1 CTD small 217844_at,NM_02119 58190 1190.53 844.1 892.05 879.94MAML3 Mastermind-242794_at AI569476 55534 506.33 369.45 380.55 360.53NAP1L1 Nucleosome 1556121_aAK021751 4673 438.94 309.29 325.92 323.93PFKFB3 6-phosphofr202464_s_NM_00456 5209 4410.45 3144.8 3196.57 3322.94POGK Pogo trans 239392_s_aAI983896, 57645 416.38 317.79 284.9 311.01

RCC1 Regulator 206499_s_aNM_00126 1104 1684.92 1264.54 1225.68 1206.8TRPM7 Transient r 237884_x_BF939551, 54822 158.505 130.925 102.905 107.99UTP18 Protein con203721_s_NM_01600 51096 3388.65 2526.23 2422.66 2464.5UBTF Upstream bi202692_s_aNM_014233 7343 607.267 458.473 433.33 431.007NCOA3 Nuclear rec207700_s_aNM_006534 8202 1931.01 1394.84 1457.74 1392.53DHX36 DEAH box p223138_s_aAI937206, 170506 1923.45 1482.44 1354.74 1408.81UBQLN1 Ubiquilin 222989_s_aNM_013438 29979 1817.49 1354.08 1290.24 1368.01DUT Deoxyuridin208956_x_aU62891, U 1854 3108.01 2389.06 2330.43 2335.16FXR1 Fragile X 201635_s_aAI990766, 8087 1702.01 1268.53 1212.03 1243.79HNRNPH3 Heterogene207127_s_aNM_021644 3189 2339.5 1794.84 1666.58 1706.88IPO11 Importin 11234304_s_aAL162083, 51194 970.56 729.44 724.59 695.05NEIL2 Nei like 2; 226585_at,BE466620, 252969 505.41 350.39 385.87 375.75UBE2G1 Ubiquitin-c209142_s_aBC002775, 7326 2362.41 1785.78 1768.78 1705.43ATG10 Protein wit1570523_sAF318326 83734 311.74 240.01 227 220.35ATP11C ATPase clas226785_at BF475862 286410 974.88 756.96 732.49 653.13C2orf68 Protein of 238768_at,BF976290, 388969 440.59 344.56 323.67 308.31CHN1 Chimerin 1;212624_s_BF339445 1123 1337.73 949.94 1014.62 984.21COIL Coilin; pla 203653_s_BG391060 8161 718.4 549.82 523.4 512.15DIP2B Disco-inter224872_at AB040896 57609 1109.46 834.63 788.64 830.28ERF Ets2 repres203643_at NM_00649 2077 1629.95 1216.38 1189.86 1192.96FAM134A Protein of 221984_s_AL040896 79137 1311.6 1029.79 953.99 906.53GSK3B Glycogen sy209945_s_BC000251 2932 788.63 585.93 577.63 575.17HIST1H1D Histone 1 H214537_at,NM_00532 3007 2054.35 1414.26 1589.08 1549.53LCORL Protein of 235970_at,AI807408, 254251 390.96 304.675 299.255 295.895MKLN1 Muskelin 1244171_at AW505004 4289 141.16 104.62 112.93 96.73NR2C2 Nuclear re 225477_s_AL138444 64432 822.51 618.34 592.93 607.17STAG2 Stromal ant207983_s_aNM_006603 10735 1532.58 1143.46 1127.4 1108.76TAOK1 TAO kinase227454_at AB037782 57551 831.69 579.94 680.96 576.87TYW3 Member of 227141_at AW205739 127253 860.81 645.76 627.49 623.25RBM25 RNA bindin212027_at,AI925305, 58517 1382.07 1034.22 1040.08 1034CUL4B Cullin 4B; 202213_s_aAI650819, 8450 1680.08 1348.12 1267.33 1268.19SON SON DNA bin201085_s_aAA664291, 6651 1812.39 1335.62 1377.1 1321.97ARL4C ADP-ribosy202206_at,AW450363, 10123 2398.68 1842.49 1753.72 1787.22PNN Pinin desmo212036_s_aAW152664, 5411 1294.48 957.515 941.7 978.46KCMF1 Potassium c222471_s_aAI743396, 56888 613.1 454.825 452.63 451.5AK2 Adenylate k205996_s_aNM_013411 204 1323.88 954.337 991.59 998.41MRPL19 Mitochondri232071_at,BF670827, 7652.25 913.438 737.175 718.375 684.865JMJD6 Jumonji dom212722_s_aAK021780, 23210 989.413 780.193 748.71 702.387MBNL1 Muscle blin201151_s_aBF512200, 4154 697.295 528.07 529.545 522.485PPP1CB Protein pho201409_s_aNM_002709 5500 1834.41 1353.76 1380.06 1336.93ARID2 AT rich int 225486_at,AB046777, 196528 450.31 336.025 369.683 329.433FAM172A Protein of 212936_at,AI927701, 83989 587.325 404.89 513.165 407.01FBXL3 F-box and l242829_x_aAA975422, 26224 743.04 548.84 552.23 545.6FBXO17 F-box prote220233_at NM_02490 115290 2026.11 1559.26 1506.67 1444.87MPHOSPH1M phase pho212885_at,AL545921, 10199 1512.9 1117.02 1137.57 1104.25NRBP2 Protein of 225949_at N21030 340371 1377.4 924.11 1377.03 760.86PRPF3 PRP3 pre-m202251_at,NM_004698 9129 731.42 541.33 548.57 538.97SART1 Squamous ce200051_at NM_00514 9092 928.3 714.64 679.11 670.53

SBNO1 Protein wit218737_at,NM_01818 55206 1149.56 895.27 798.87 859.14UBE2E3 Ubiquitin- 210024_s_aAB017644, 10477 3213.51 2326.47 2425.25 2398.01TARDBP TAR DNA bin221264_s_aNM_031214 23435 430.6 321.98 319.5 317.48PDE4D Phosphodies204491_at,R40917, AF 5144 1066.78 810.342 812.693 819.28UBE3A Ubiquitin p211285_s_aU84404, A 7337 1378.77 1035.29 1057.28 1016.16STIP1 Stress-ind 212009_s_aAL553320, 10963 3392.82 2523.92 2589.25 2433.91ERCC1 Excision re 203719_at,NM_001983 2067 1631.74 1189.66 1243.61 1229.43UBE2D3 Ubiquitin-c200667_at,BF448062, 7323 1185.65 987.64 965.78 1031.33USP24 Ubiquitin s 212381_at,BF444943, 23358 743.505 547.275 561.02 548.765HNRNPA3 Heterogeneo206809_s_aNM_005758 220988 1893.06 1427.24 1395.4 1406.68WNK1 WNK lysine 211992_at,AI445745, 65125 1139.91 885.187 845.913 838.893ALMS1 Alstrom sy 214220_s_aAW003635 7840 385.52 300.08 286.24 275.53CDC2L5 Cell divisi 232266_x_AK024379 8621 1088.2 841.9 823.31 774.83COMMD1 Copper met226024_at,BG481459, 150684 1730.04 1287.94 1272.48 1316.95CPSF6 Cleavage an202470_s_aNM_007007 11052 422.184 301.746 352.309 294.458CTCF CCCTC-bindi202521_at,NM_006565 10664 1603.96 1247.98 1188.85 1167.86GFM1 G elongatio232295_at AK000780 85476 154.93 117.79 118.62 110.16PPP3CA Protein pho202429_s_AL353950 5530 1398.74 1087.77 1039.74 1000.94PPP4R1 Protein pho201594_s_aNM_00513 9989 1813.3 1335.24 1334.83 1379.68RNF34 Ring finger 236288_at,AW572402 80196 191.91 141.7 161.25 126.83SPC25 Spindle po 209891_at AF225416 57405 1139.53 826.6 872.36 861.47ZIC2 Zinc finger 223642_at,AF193855, 7546 862.94 683.1 625.96 635.7ZMYND11 Zinc finger 1554158_aBC034784, 10771 113.08 78.11 85.34 88.7HEATR1 Protein con218594_at,NM_018072 55127 1599.49 1261.84 1205.15 1216.89ATL2 Atlastin G 235848_x_aN35250, A 64225 610.123 465.817 446.46 447.47CSPG6 Chondroitin209257_s_aBF795297, 9126 2510.67 1983.51 1841.28 1848.13ATF7 Activating 228829_at,AI279868, 11016 714.085 490.545 605.34 497.21BIRC6 Baculoviral224635_s_aAI017106, 57448 1654.7 1200.03 1323.32 1203.6DICER1 Dicer 1 rib 206061_s_aNM_030621 23405 627.032 482.115 465.885 486.82ENOSF1 Enolase sup204142_at,NM_017512 55556 1539.07 1193.11 1164.89 1142.03GALK2 Galactokin 205219_s_aNM_002044 2585 525.22 406.505 395.74 383.135HMG20B High mobili209113_s_aAF288679, 10362 932.57 708.98 721.37 675.265HSPA1A Heat shock 200800_s_aNM_005345 3303.5 3566.22 2845.66 2647.54 2587.94HSPA1B Heat shock200800_s_aNM_005345 3303.5 3566.22 2845.66 2647.54 2587.94LDLR Low density202067_s_aAI861942, 3949 1642.32 1303.83 1205.61 1188.3MYO10 Myosin X; a216222_s_AI561354, 4651 572.805 451.595 428.745 407.93RABL3 Protein of 226089_at,AI742028, 285282 736.945 552.185 563.665 566.57EIF5 Eukaryotic 208290_s_aNM_001969 1983 3749.21 2832.44 2816.45 2799.24AGFG1 ArfGAP with213926_s_aAI742626, 31448.9 2097.43 1628.4 1706.03 1634.1ARID1A AT rich int 210649_s_aAF231056, 8289 1360.76 1033.33 991.79 1027.17BOP1 Block of pr 212563_at BG491842 23246 2063.03 1551.34 1572.95 1512.64COPS2 Thyroid rec209838_at,AA496247, 9318 961.81 724.13 709.51 737.97DYNC1LI1 Dynein cyto222479_s_AK001081 51143 1602.3 1165.49 1254.07 1198.04GLI2 GLI-Kruppel207034_s_aNM_030379 2736 742.265 548.165 634.31 528.765HDAC8 Histone dea223345_at,AF230097, 55869 376.15 295.25 267.26 286.35HMGB1 High-mobili200679_x_aBE311760, 3146 3279.82 2721.97 2799.22 2633.91HNRNPM Heterogeneo200072_s_aAF061832, 4670 3237.04 2422.3 2416.28 2502.41IPO4 Protein wit218305_at,NM_02465 79711 1514.14 1095.05 1212.91 1112.91

LBR Lamin B rec201795_at,NM_00229 3930 2402.92 1827.24 1817.37 1792.27M6PR Mannose-6-200900_s_AI583537 4074 2591.49 1885.03 1980.52 1978.95ME1 Malic enzy 204058_at,AL049699, 4199 3270.96 2529.74 2500.57 2509.28NBEAL1 Amyotrophic1554106_aAB053318 130029 374.4 326.89 229.51 289.28NFAT5 Nuclear fac215092_s_aAJ005683, 10725 868.69 665.3 647.37 638.83NRF1 Nuclear re 204651_at,AW003022 4899 537.795 377.685 459.885 402.915PPP3R1 Protein ph 204507_s_aNM_000945 5534 667.43 470.13 540.69 495.58PRKCA Protein kin 206923_at,NM_002737 5578 1109.21 845.657 837.933 810.527PUM2 Pumilio hom201493_s_aBE778078, 23369 2070.21 1543.13 1534.14 1567.7SUV39H2 Suppressor219262_at,NM_02467 79723 189.1 171.81 126.08 129.2TSHZ1 Protein wit223282_at,W60810, 10194 269.82 217.26 199.76 187.45UBR3 Protein wit230029_x_AI708334 130507 903.38 688.34 686.81 666.71ZMYM6 Zinc finge 219925_at NM_00716 9204 192.33 146.92 156.2 130.63BMP2K Protein wit37170_at, AB015331, 55589 318.82 237.3 246.375 235.22GABPB1 GA binding 204618_s_aNM_00525 2553 862.03 649 655.695 638.385POLR2E Polymerase 213887_s_aAI554759, 5434 3047.31 2261.05 2328.62 2345.25PTGS2 Prostagland204748_at,NM_000963 5743 466.63 361.965 339.57 352.935RAB28 RAB28 memb209084_s_aBE504689, 9364 701.965 551.355 528.705 533.075NDRG3 Protein wit217286_s_aBC001805, 57446 1296.36 1002.42 996.3 974.883PTPN2 Protein tyr 204935_at,NM_002828 5771 625.927 460.153 484.203 451.807MAP3K2 Mitogen-act221695_s_aAF239798, 10746 407.52 309.243 320.815 286.268SMAD2 SMAD famil203075_at,AW151617, 4087 1127.82 870.845 845.757 820.332ATP8B1 ATPase clas214594_x_BG252666 5205 1233.72 935.78 950.19 917.98BNIP3L BCL2 adeno221479_s_AF060922 665 1624.99 1304.51 1188.62 1201.13CRKRS Cdc2-relate219226_at,NM_016507 51755 1092.37 819.963 846.32 825.977CYB5R4 Cytochrome219079_at NM_01623 51167 1179.45 914.21 854.62 903.56DHX30 DEAH box po212674_s_aAK002076, 22907 782.27 575.81 601.93 600.76DYRK2 Dual-specif202971_s_aNM_00648 8445 307.81 253.35 237.59 209.82EIF5A Eukaryotic 201123_s_aNM_001970 1984 4444.12 3445.14 3349.65 3277.27ERRFI1 ERBB recept224657_at AL034417 54206 3563.18 2815.3 2624.22 2679.01FLJ32063 Synthetic 235147_at R56118 440928 214.02 156.8 164.39 164.38FOXJ3 Protein con206015_s_NM_01494 22887 1255.21 987.38 913.87 958.19G3BP1 GTPase acti242422_at,AA180161, 10146 570.74 440.55 427.14 426.04GADD45GI Growth arre212891_s_BF972185 90480 1083 832.21 832.52 803.94GINS2 Member of 221521_s_BC003186 51659 1910.53 1428.04 1460.66 1439.15GTF2E2 General tra202680_at NM_00209 2961 1817.31 1406.26 1364.21 1354.27KDM4C Jumonji do209984_at AB037901 23081 560.51 421.65 401.76 448.7LRP5 Low density209468_at,AB017498, 4041 453.6 354.69 346.7 323.93NLE1 Protein wit203867_s_NM_01809 54475 951.65 710.99 720.67 738.7PAFAH1B3 Platelet ac 203228_at NM_00257 5050 2855.98 2219.88 2146.77 2147.93PTPN18 Protein tyr 1569552_aBC031076 26469 38.71 26.87 30.1 31.76RQCD1 RCD1 requir1554080_aBC007102 9125 693.93 519.42 525.57 530.18TRNT1 tRNA nucleo1552625_aAB063105, 51095 791.79 628.24 586.9 587.07UBE2K Ubiquitin c 202347_s_aAB022435, 3093 1494.91 1148.39 1103.09 1153.5ZNF143 Zinc finger 221873_at,AW162015 7702 507.3 391.78 372.16 383.23ZNF207 Protein wit239937_at,AI860558, 7756 485.06 358.56 409.05 339.06LZTFL1 Leucine zip218437_s_aNM_020347 54585 420.91 318.355 331.175 315.415EIF1AX Eukaryotic 201016_at,BE542684, 1964 2840.85 2209.65 2300.69 2106.08

NF1 Neurofibro204325_s_aNM_000267 4763 575.09 428.78 424.75 429.233NIPBL Nipped-B ho207108_s_aNM_015384 25836 462.722 354.515 350.7 341.978AFG3L1 236250_at,AI859065, 172 494.655 382.035 382.165 363.105LARP4B RACK1-inte208953_at,AU154358, 23185 1183.4 903.03 906.635 893.185LITAF Lipopolysa 200704_at,AB034747, 9516 6092.34 4677.93 4587.32 4617.81NUP205 Nucleopori212247_at,AW008531, 23165 1735.97 1339.9 1366.94 1284.45SKIV2L2 Protein wit212896_at,D29641, A 23517 1924.53 1468.15 1477.13 1469.2TNRC6A Trinucleoti 224704_at,N21600, AI 27327 961.13 768.78 707.565 745.755USP7 Ubiquitin s 201498_at,AI160440, 7874 2158.85 1662.73 1689.1 1651.6EARS2 Protein con225993_at,AL520723, 124454 1109.9 812.72 901.807 873.84USP34 Member of t207365_x_aNM_014709 9736 993.897 749.588 749.915 756.091PNPT1 Polyribonuc225291_at,AI967971, 87178 2614.7 2007.46 2023.38 1949.72ANAPC1 Anaphase pr231973_s_aAK001223, 64682 1018.07 768.7 764.1 793.7CHD1 Chromodoma204258_at,NM_001270 1105 1282.52 973.055 1056.65 937.075EIF4A1 Eukaryotic 214805_at,U79273, U 1973 603.62 472.86 467.08 445.58FARSB Phenylalany232063_x_aAW024617, 10056 182.45 149.64 124.28 142.19HMGB3L1 Synthetic 216548_x_aAL049709, 3149 1316.54 981.51 1025.58 1017.26IPO8 Importin 8;205701_at,NM_00639 10526 390.49 294.41 307.93 287.85KIAA1715 Protein wit225717_at AI814587 80856 295.57 223.98 227.9 226.02KIF3A Kinesin fam213623_at NM_00705 11127 424.75 374.55 282.06 316.4NAGPA N-acetylgl 205090_s_NM_01625 51172 767.56 545.09 681.98 538.68NOP16 Protein of 203023_at NM_01639 51491 1857.83 1456.32 1431.79 1382.09ORC4L Origin reco203352_at,NM_002552 5000 412.22 319.08 318.87 301.35POLR1C Polymerase209317_at AF008442 9533 751.97 585.08 557.66 575.9POLR3G Polymerase 206653_at,BF062139, 10622 244.425 177.3 190.19 186.61PTPN4 Protein tyr 205171_at,NM_00283 5775 613.92 498.63 474.57 437.57RAB2A RAB2A memb208734_x_M28213 5862 2349.63 1733.22 1835.98 1811.45REV1 REV1 homol218428_s_aNM_016316 51455 525.52 403.17 397.29 401.57SNRNP35 U1-snRNP bi205300_s_aNM_022717 11066 605.26 453.46 438.14 489.57TSC22D1 TSC22 domai215111_s_AK027071 8848 2965.8 2340.94 2223.71 2218.55TTRAP TRAF and TN202266_at NM_01661 51567 2970.24 2331.69 2286.35 2170.08USP9X Ubiquitin s 201099_at,AA824386, 8239 2845.24 2246.03 2256.22 2239.61ZNF285A Member of t236328_at,AW513227 26974 301.18 226.33 242.95 223.2ZNF395 Zinc finger 218149_s_aNM_01760 55893 755.65 568.62 584.05 574.46ZNF643 Protein con207219_at,NM_02307 65243 115.5 88.99 97.82 78.06ANKHD1 Ankyrin rep219081_at,NM_024668 54882 538.57 407.695 396.215 403.44SMC4 Structural 201663_s_aNM_005496 10051 2075.85 1597.47 1617.48 1623.61DDX17 DEAD (Asp-208151_x_aNM_030881 10521 1522.45 1183.18 1142.74 1211.28SR140 U2-associa 212061_at,AB002330, 23350 301.528 222.159 221.257 230.89MKI67 Antigen ide212020_s_aAU152107, 4288 1475.23 1141.79 1139.61 1119.9MTPAP PAP associ 218947_s_aNM_018109 55149 1386.83 1096.52 1045.51 1056.51OGT O-linked N-207564_x_aNM_003605 8473 1373.35 1041.87 1067.62 1055.17PCBP2 Poly(rC) bi 213517_at,AW103422, 5094 532.22 381.58 467.53 362.79RAD23B RAD23 homo201223_s_aNM_002874 5887 1745.76 1345.96 1358.73 1330.93SLC12A8 Solute carr 203318_s_aNM_021964, 7707 588.355 407.083 491.103 429.13ZNF148 Zinc finger 203318_s_aNM_021964, 7707 588.355 407.083 491.103 429.13GNAL Guanine nu206355_at,R20102, N 18395 323.521 234.069 273.169 248.985PTPRM Protein tyr 203329_at,NM_002845 5797 1203.44 949.135 992.8 985.705

SMCHD1 Protein wi 212579_at,AB014550, 23347 400.4 307.497 309.97 308.727ANXA11 Annexin A1214783_s_aBG177920, 311 897.08 653.46 680.65 734.38ARIH2 Ariadne hom201229_s_aBC000422, 10425 1039.78 818.4 822.11 763.14ASPM Asp homolo232238_at,AK001380, 259266 595.39 501.21 415.76 447.18C10orf46 Member of 227137_at,N25937, A 143384 653.78 543.16 482.795 508.725EIF4G1 Eukaryotic 208624_s_aBE966878, 1981 2305.18 1859.58 1749.41 1719.76FOXN3 Forkhead bo205022_s_NM_00519 1112 429.3 308.98 339.64 339.66HIST1H3F Histone clu208506_at,NM_02101 8968 107.2 77.63 78.97 91.11HNRNPR Heterogene208765_s_aNM_005826 10236 2716.86 2079.98 2097.53 2081.14KIF11 Kinesin fa 204444_at,NM_00452 3832 2089.55 1614.74 1646.38 1579.58KPNA1 Karyopherin202056_at,AW051311 3836 703.29 522 552.58 549.67KRAS Homolog of 204009_s_aW80678, B 3845 1753.43 1410.09 1314.79 1333.12MAFG Homolog G o204970_s_NM_00235 4097 1891.41 1483.9 1418.18 1472.36MBD2 Methyl CpG202484_s_AF072242 8932 2039.41 1616.79 1552.12 1538.09MRPS28 Protein of 219819_s_NM_01401 28957 1892.35 1463.68 1426.8 1471.15MRTO4 Member of t220688_s_NM_01618 51154 1370 1104.69 1037.19 1018.22MYC Myc proto-o202431_s_NM_00246 4609 3146.06 2445.87 2394.02 2442.23MYST3 MYST histon216361_s_aAJ251844, 7994 672.55 529.73 535.185 503.76NFIA Nuclear fac224975_at,AB037860, 4774 380.56 298.68 288.63 289.39NUP98 Nucleopori203194_s_aAA527238, 4928 775.38 614.96 583.16 595.57PLK4 Polo-like k 204886_at,AL043646, 10733 562.72 446.427 443.86 440.233PNKP Polynucleot218961_s_aNM_007254 11284 851.51 522.85 813.16 628.01PRMT5 Protein arg1564520_sAK027737 10419 1320.83 998.93 1091.01 962.12PRPF4B PRP4 pre-mR202126_at,AA156948, 8899 1006.88 765.435 794.73 798.705PTK2 PTK2 protei207821_s_aNM_005607 5747 1389.69 1121.33 1153.73 1079.28QKI Quaking ho212636_at AL031781 9444 346.23 260.83 268.35 270.58RABGGTB Rab geranyl209180_at,U49245, U 5876 1925.08 1438.41 1463.53 1520.99SMN1 Survival mo203852_s_aNM_000344 6606 1309.22 1054.82 1025.68 933.53SMN2 Survival o 203852_s_aNM_000344 6606 1309.22 1054.82 1025.68 933.53TEX10 Protein of 218104_at NM_01774 54881 1428.65 1077.52 1116.15 1093.6TGOLN2 Trans-Golg 203833_s_aBF061845, 10618 924.17 764.11 643.39 732.36TNPO1 Transporti 1557278_sAA639220, 3842 116.64 90.03 89.67 90.25TSEN2 SEN2-like; 219581_at NM_02526 80746 1100.01 873.94 865.77 800.92UBE2B Ubiquitin-c202334_s_aAI768723, 7320 881.15 676.58 729.44 630.47UPF2 UPF2 regul203519_s_NM_01554 26019 1227.85 972.69 895.91 959.6ZFHX3 Zinc finger 226137_at,AI288759, 463 1245.66 1015.57 918.44 945.57ZNF286A Protein wit1557684_atBM968434, 57335 702.53 568.74 502.15 553.86MCM6 Minichromo201930_at,NM_005915 4175 2082.05 1510.78 1440.36 1564.3TUBD1 Tubulin del210389_x_aBC000258, 51174 977.22 761.297 844.967 758.687GART Trifunction210005_at,D32051, A 2618 564.863 435.113 418.22 437.827ATRX Alpha thal 208859_s_aAI650257, 546 943.82 748.16 704.615 687.305GPATCH2 Member of 219078_at,NM_01804 55105 531.335 340.07 509.195 325.195LPP LIM domain 202821_s_aAL044018, 4026 1092.59 827.82 831.355 759.48NCOR1 Nuclear rec200854_at,AB028970, 9611 1827.03 1427.91 1438.37 1423.31PPP2R5E Protein pho203338_at,NM_006246 5529 1863.18 1506.09 1388.81 1418.82SFRS3 Splicing fa 202899_s_aNM_003017 6428 3408.18 2600.94 2774.15 2751.88SGOL2 Shugoshin-l230165_at,N31731, A 151246 1169.88 942.855 897.87 878.695HSPA4 Heat shock 208815_x_aAB023420, 3308 3720.57 2940.62 2847.78 2871.98

RSF1 Remodeling 218166_s_aNM_016578 51773 572.717 437.727 449.5 421.353SERBP1 SERPINE1 m209669_s_aBC003049, 26135 2426.55 1925.98 1977.12 1881.55ATF1 Activating 1565269_sAF047022 466 836.71 653.27 662.61 624.46BXDC1 Brix domain225866_at AA976536 84154 1898.28 1505.94 1464.12 1437.35BXDC2 Protein con219177_at NM_01832 55299 1534.8 1103.66 1318.94 1153.46C18orf10 Protein of 213616_at BF063896 25941 897.92 729.08 673.25 678.87CEBPD CCAAT-enhan203973_s_NM_00519 1052 1793.96 1504.61 1360.79 1301.8CHAF1A Chromatin 203975_s_aBF000239, 10036 659.38 518.36 532.62 482.33CSNK1G3 Casein kina227767_at AI073822 1456 984.06 812.1 735.49 744.43CTDSP2 Conserved 208735_s_AF022231 10106 1086.34 823.88 891.41 813.92DIP2A Protein wi 215529_x_AI590053 23181 2082.09 1673.32 1559.05 1610.67ESF1 Protein wit218859_s_NM_01664 51575 1839.5 1492.04 1377.9 1398.54EXOSC8 Exosome com215136_s_aAL050353, 11340 1068.17 883.62 803.71 797.95FUSIP1 FUS interac204299_at,NM_021993 10772 1326.82 1058.44 1017.74 1022.79GEMIN4 Gem associ205527_s_aNM_015487 50628 1243.21 910.24 1010.02 963.2GRB14 Growth fact206204_at NM_00449 2888 603.79 482.07 449.08 468.57NDE1 NudE nuclea227249_at AI857685 4629 698.59 546.36 549.47 525.1NFYC Nuclear tra211797_s_U62296 4802 536.96 426.89 421.06 396.24PPT1 Palmitoyl- 200975_at NM_00031 5538 3162.99 2451.44 2470.66 2450.95PVR Poliovirus 212662_at BE615277 5817 864.07 677.81 672.94 660.7RAD17 RAD17 homo207405_s_aNM_002873 5884 598.34 464.1 483.73 451.4RIF1 Rap1 intera236620_at,AU150841, 55183 1193.21 1038.88 872 868.13RPA4 Replication221143_at,NM_01334 29935 239.27 191.4 170.5 196.64RSAD1 Member of 218307_at NM_01834 55316 1443.75 1116.54 1129.13 1094.57TBK1 TANK-bindin218520_at NM_01325 29110 2177.63 1726.52 1715.28 1630.86TBL1XR1 Transducin 222633_at,AF268193, 79718 1025.61 768.605 808.2 763.35TEAD2 TEA domain226408_at AA905942 8463 794.01 620 658.7 581.38TRIM13 Tripartite 230192_at AI472310 10206 252.04 208.35 194.26 183.5USP9Y Ubiquitin s 228492_at,AV681765, 8287 449.43 324.81 369.4 350.36WWOX WW domain 219077_s_aNM_016373 51741 424.32 341.635 337.605 335.905ZCCHC2 Protein of 219062_s_aNM_017742 54877 439.97 346.975 337.195 336.335ZCRB1 Zinc finge 225394_s_aAI146850, 85437 2463.17 1913.8 1973.68 1846.85ZNF271 Synthetic 211009_s_aAF159567, 10778 381.29 332.18 294.44 260.52ZNF324B Member of t222318_at,AI744673, 388569 663.51 487.65 589.45 470.64ZNF584 Protein con222318_at,AI744673, 388569 663.51 487.65 589.45 470.64ZNF721 Protein wit228029_at,AW513477 170960 295.85 237.97 228.44 219.56ZNF766 Protein wit227284_at,AA081007, 90321 568.21 447.9 434.44 439.49SART3 Squamous ce200069_at,AI656011, 9733 1380.21 1134.74 1076.98 1004.41NFIB Nuclear fac209289_at,AI700518, 4781 935.25 731.175 732.197 713.727QSER1 Protein of 219705_at,NM_024774 79832 573.283 450.713 443.957 449.983TDRD3 Tudor domai208089_s_aNM_030794 81550 402.437 315.357 337.427 446.163ARL8B ADP-ribosyl217852_s_aNM_01818 55207 3188.13 2480.19 2505.89 2477.97BCLAF1 BCL2-associ201083_s_aAA740754, 9774 1097.65 826.92 875.815 863.335BMPR1A Bone morph204832_s_aNM_004329 657 1089.16 839.945 849.965 846.41ETV4 Ets variant 211603_s_U35622, B 2118 891.865 696.18 699.475 689.685HS2ST1 Heparan sul203284_s_aAW151887, 9653 584.465 456.375 426.755 446.62ZNF639 Zinc finger 222623_s_aBF001614, 51193 628.91 462.255 517.69 495.54GIGYF2 GRB10 inter212260_at AL045800, 26058 377.335 321.54 327.285 318.525

VEZF1 Vascular en202171_at,AU146275, 7716 1645.77 1317.91 1318.35 1310.06CDK8 Cyclin depe204831_at,R59697, N 1024 636.467 481.847 522.83 497.047EREG Epiregulin; 205767_at,NM_001432 2069 1803.31 1301.55 1371.45 1367.35PHIP Pleckstrin 212542_s_aBF224151, 108160 921.133 747.323 741.807 741.967SRRT Protein wit201679_at,BE646076, 51593 1366.2 1087.72 1052.94 1103.24PIAS1 Protein inh217862_at,N24868, A 8554 651.57 533.493 494.683 515.533AGAP1 ArfGAP wit204066_s_aNM_014914 116987 971.28 761.42 779.32 743.09AGPS Alkylglyce 225108_at BF111719 8540 742.45 588.96 575 579.65ARAF Homolog of230652_at AI760277 369 224.95 155.36 192.5 177.92ASXL1 Additional 244519_at AI829840 171023 881.06 720.59 691.47 657.94BRD7 Bromodomain221776_s_aAI885109, 29117 1564.75 1175.86 1304.04 1173.55CCNB2 Cyclin B2; 232768_at,AK023404, 9133 142.76 116.31 107.25 109.56CNKSR2 Connector e229116_at AI670947 22866 401.99 319 315.28 299.13DBF4B DBF4 homolo238508_at BG026951 80174 1112.27 892.78 882.29 826.57DFFB DNA fragme206752_s_NM_00440 1677 137.94 109.02 107.95 106.69DHX29 Member of 212648_at,AL079292, 54505 1677.07 1325.3 1322.08 1278.88DYNC2LI1 Dynein cyto1554324_sBC040558, 51626 163.21 128.53 129.07 125.99GCLM Glutamate-c234986_at,AA630626, 2730 2642.06 2078.01 2068.03 2044.85GNA13 Guanine nuc206917_at,NM_00657 10672 732.86 574.27 596.63 558.165IL15 Interleukin217371_s_Y09908 3600 277.39 208.01 219.86 222.85KIAA0196 Protein of 201985_at NM_01484 9897 2499.99 1855.9 2205.44 1808.15KIF1B Kinesin fam226968_at AK023184 23095 601.78 493.43 443.89 474.45LDLRAD3 Protein con234985_at AW043782 143458 1399.86 1142.69 1115.73 1036.48LMNB2 Lamin B2; m216952_s_M94363 84823 1830.56 1430.94 1448.6 1395.45LPHN2 Latrophilin 206953_s_NM_01230 23266 727.52 554.65 563.99 587.15METTL7A Protein of 211424_x_AF113007 25840 566.37 452.73 421.62 454.48MID1 Midline 1; 203636_at,BE967532, 4281 2699.62 2152.87 2125.53 2093.93MLL3 Myeloid-ly 222413_s_aAW137099, 58508 430.337 355.107 330.665 325.838MYO3B Myosin IIIB216508_x_aAC007277, 10357 2871.93 2154.06 2392.38 2161.33NFE2L2 Nuclear fac1567014_sAF323119, 4780 977.47 800.01 735.98 755.75NUP155 Nucleoporin206550_s_aNM_00429 9631 1083.82 868.59 854.33 822.95PIKFYVE Phosphatidy213111_at,AB023198, 200576 1064.15 877.26 821.15 796.94PTBP1 Polypyrimid212016_s_aAA679988, 5725 2842.04 2224.5 2347.23 2069.54RASA1 RAS p21 pro202677_at,NM_00289 5921 1190.06 952.66 939.07 904.89TCF3 Transcripti 209152_s_AI655986 6929 500.14 400.57 396.14 376.27THRAP3 Thyroid ho 222439_s_aBE967048, 9967 762.12 538.145 503.14 527.015USP33 Ubiquitin s 214843_s_aAK022864, 23032 943.96 711.22 819.68 680.95XPO7 Exportin 7; 208459_s_aNM_01502 23039 1123.37 898.36 890.51 834.29BUB1 Budding un209642_at,AF043294, 699 1139.16 908.54 899.335 862.54CACYBP Calcyclin b 201381_x_aAF057356, 27101 4056.95 3274.32 3325.66 3204.45DKC1 Dyskeratos201478_s_aU59151, AJ 1736 2805.76 2201.78 2265.76 2216.05ROCK1 Rho-associa213044_at,N22548, A 6093 1488.6 1158.92 1177.76 1158.36SIK3 KIAA0999 p204156_at,AA044154, 23387 395.8 313.58 325.665 294.515TRA2B Splicing fa 200893_at,NM_004593 6434 2853.75 2354.84 2421.34 2334.27HECTD1 Member of 241683_at,AW207734, 25831 532.433 459.183 398.373 397.47FBXO11 F-box prote222119_s_aAL117620, 80204 1239.26 1036.75 947.62 932.986RBL1 Retinoblast205296_at,AL365505, 5933 448.157 325.267 359.727 357.923ABCB7 ATP-binding209620_s_AB005289 22 844.29 683.66 642.85 670.64

CCNA2 Cyclin A2; 213226_at,AI346350, 890 1511.36 1198.82 1211.88 1154.55CEP290 Centrosoma221683_s_AF317887 80184 329.37 266.59 254.63 257.47DHX15 DEAH box p201386_s_aAF279891, 1665 3467.59 2749.33 2712.16 2734.16DIS3 DIS3 mitot 218362_s_aNM_01495 22894 127.9 106.4 96.93 98.46EBF1 Early B-cel 227646_at BG435302 1879 330.83 270.02 267.97 245.57GALC Galactosyl 204417_at NM_00015 2581 864.16 683.59 672.82 676.58GKN2 Gastrokine 238222_at,AI821357, 200504 564.28 371.37 571.05 382.56GPR177 Protein of 228949_at,AL534095, 79971 113.78 83.41 106.58 80.11HBS1L HBS1-like; 209314_s_AK024258 10767 829.02 531.63 890.92 532.93HSPA13 Heat shock202558_s_NM_00694 6782 704.11 558.65 547.13 558.51ID3 Inhibitor o 207826_s_NM_00216 3399 3854.98 2963.62 3137.02 3025.33IMPA2 Inositol my203126_at,NM_01421 3613 1730.82 1352.58 1354.52 1365.99LARP1 Protein co 212193_s_BE881529 23367 2485.82 1937.69 1971.66 1968.11NARG1L Protein wit1555450_aBC032318, 79612 306.83 229.14 280.56 216.44NDUFAF3 Protein of 209177_at BC002873 25915 1174.16 924.56 949.12 896.54NPM3 Nucleoplasm205129_at,NM_00699 10360 1533.73 1180.4 1160.46 1281.25NR1H2 Nuclear rec218215_s_NM_00712 7376 691.42 535.23 545.72 550.46PPFIA1 Protein tyr 210235_s_U22815 8500 492.55 398.3 362.98 402.5PPWD1 Protein wit213483_at AK025679 23398 548 446.53 424.82 419.57PRKAA1 Protein kin 214917_at,AK024252, 5562 145.53 117.91 122.61 105.12PRPF39 Protein wit220553_s_NM_01833 55015 766.5 589.96 674.55 546.67PRPF40A PRP40 pre-m218053_at,NM_017892 55660 2547.92 2063.15 1981.61 1960.94PSIP1 PC4 and SFR210758_at AF098482 11168 568.76 469.66 431.55 446.24RAB7A RAB7A memb211961_s_aAK000826, 7879 2197.83 1739.42 1794.33 1666.69RBM19 Protein con205115_s_aNM_016196 9904 835.35 641.07 730.94 611.57RBM39 RNA binding207941_s_aNM_004902 9584 3615.58 2925.08 2853.68 2809.12RIMKLB Protein of 226164_x_aAI760919, 57494 379.635 299 318.715 278.3RNF13 Protein has201780_s_NM_00728 11342 1659.65 1319.91 1322.41 1288.18SC65 Synaptonem204078_at NM_00645 10609 721.52 555.45 586.42 559.38TIAL1 TIA1 cytoto202405_at,BF432532, 7073 521.8 418.57 406.07 410.44TRIO Triple func 209010_s_AI797657 7204 234.66 184.5 195.34 176.31USP40 Ubiquitin s 225089_at,AA127740, 55230 872.02 723.06 639.95 688.93USP48 Ubiquitin s 225925_s_aAA044730, 84196 437.84 346.78 363.79 323.6WWP1 WW domain c212637_s_aAU155187, 11059 1499.74 1224.47 1206.72 1150.63XPOT Exportin t 212160_at,AI984005, 11260 4016.11 3279.7 3174.01 3022.53ZNF160 Protein wit214715_x_aAK024789, 90338 507.47 411.81 400.17 393.4ZNF565 Protein wit228305_at,BE466825, 147929 317.11 246.4 258.4 246.64NCBP2 Nuclear ca 201521_s_aNM_007362 22916 640.41 518.47 501.71 492.56RALGAPA1 Protein wit213049_at,BG436400, 253959 398.887 324.1 313.263 301.837SETD2 SET domain 212493_s_aAI761110, 29072 540.18 430.17 433.627 431.403NUCKS1 Nuclear cas217802_s_aNM_022731 64710 3178.93 2604.24 2434.43 2540.5C2orf4 Mediator of219065_s_aNM_015955 51072 2642.97 2029.17 2089.39 2107.93NFIC Nuclear fac206929_s_aNM_00559 4782 1919.91 1456.62 1509.74 1482.37SFRS11 Splicing fa 200686_s_aNM_004768 9295 1127.12 879.12 889.015 901.305PAFAH1B1 Platelet-ac 200815_s_aL13386, N 5048 2028.65 1605.68 1617.48 1614.01TLE4 Protein wit204872_at,NM_007005 7091 324.063 264.21 267.59 250.137EIF3C Eukaryotic 200647_x_aNM_003752 8663 3236.01 2651.09 2648.71 2569.27XRN2 5'-3' exori 223002_s_aAL136841, 22803 2137.3 1682.97 1706.37 1691.33

ABCC1 ATP-binding202804_at AI539710 4363 3234.85 2590.91 2600.61 2510.64ASF1A ASF1 anti-s203427_at,NM_01403 25842 510.7 412.62 425.21 381.25ATG5 Autophagy 202511_s_AK001899 9474 1555.71 1279.67 1202.58 1222.89ATP13A3 ATPase fam212297_at BF218804 79572 1244.68 1002.91 972.81 990.46ATRN Attractin; 212517_at AL132773 8455 1152.94 910.83 918.74 927.37C14orf106 Protein co 206500_s_aNM_018353 55320 1036.15 880.87 796.585 820.93CEBPB CCAAT-enhan212501_at AL564683 1051 6262.03 5185.6 4927.34 4798.43CNOT7 CCR4-NOT tr218250_s_aNM_013354 29883 2107.62 1697.45 1666.63 1687.78CTBP1 C-terminal 213979_s_aBF984434, 1487 516.57 427.4 387.64 405.12FMR1 Fragile X m203689_s_aAI743037, 2332 1248.01 1006.57 961.87 999.97HJURP Holliday j 218726_at NM_01841 55355 3099.76 2433.03 2428.59 2495.89HNRNPC Heterogeneo227110_at,AA126793, 3183 1529.58 1254.66 1188.76 1201.75IPO7 Importin 7;200995_at,AI741392, 10527 1604.97 1264.17 1295.39 1246.07KIF23 Kinesin fam244427_at,AW192521, 9493 395.33 285.67 347.95 304.9LAMP1 Lysosomal a201551_s_J03263 3916 1545.82 1305.14 1185.85 1201.02LAMP2 Lysosomal-200821_at NM_01399 3920 2115.41 1729.23 1654.25 1676.68MFN1 Mitofusin 1211801_x_AF329637 55669 660.9 519.05 556.1 497.56MSL2 Male-specif218733_at NM_01813 55167 584.25 458.33 487.65 449.07MYCBP2 MYC binding201960_s_aNM_01505 23077 851.7 660.73 692.47 668.09NARS2 Protein wit219217_at,NM_024678 79731 1451.7 1114.34 1224.73 1125.3NR2F1 Nuclear rec209505_at AI951185 7025 205.97 159.44 161.68 169.86NUBPL Protein wit220176_at NM_02515 80224 384.89 305.76 296.48 313.46NUP50 Nucleopori218294_s_AF267865 10762 772.11 623.19 630.99 591.38PIK3R4 Phosphoinos212740_at BF740111 30849 826.19 664.87 645.21 657.76PLK1 Polo-like k 202240_at,NM_00503 5347 1608.94 1233.95 1325.07 1276.42RAD21 RAD21 homo200607_s_aBG289967, 5885 2501.39 1950.25 1979.33 2014.43RFX3 Regulatory 238810_at H97074 5991 53.11 53.6 41.17 32.25SEH1L SEH1-like; 221931_s_aAV701173, 81929 1548.09 1226.91 1220.51 1223.66SFRS7 Splicing fa 214141_x_aBF033354, 6432 5383.64 4192.15 4319.03 4267.03SMEK1 Member of 220368_s_aNM_017936 55671 1514.45 1212.7 1242.76 1148.69TRIB1 Tribbles ho202241_at,NM_02519 10221 1342.87 1107.03 1043.82 1044.87TXNL1 Thioredoxin201588_at,NM_004786 9352 2318.33 1739.89 1811.37 1757.22UBE2E2 Ubiquitin- 225651_at BF431962 7325 1549.57 1230.5 1233.35 1210.91UBE2O Ubiquitin-c218141_at NM_02206 63893 761.62 620.82 598.49 584.79UBE4B Ubiquitinat210685_s_aAB028839, 10277 1013.63 852.71 770.02 779.59UCK2 Uridine cyt209825_s_BC002906 7371 2614.38 2064.62 2086.66 2071.81USP10 Ubiquitin s 209137_s_aBC000263, 9100 2433.59 1937.23 1974.52 1893.19UTP20 UTP20 small209725_at AF072718 27340 1323.34 1067.31 1027 1064.77VEGFC Vascular en209946_at U58111 7424 1251.7 1032.24 993.85 956.99ZNF202 Zinc finger 204327_s_aN91520, N 7753 471.07 357.81 419.9 344.11ZNF644 Protein con222580_at,AK023596, 84146 885.84 731.03 712.84 662.69SFPQ Splicing fa 201586_s_aNM_005066 6421 2722.85 2258.25 2238.71 2181.53ATP2B1 ATPase Ca+209281_s_aM95541, 490 1478.12 1259.25 1130.14 1192.78CAND1 Cullin-asso 208838_at,AB020636, 55832 990.3 819.225 809.69 802.53CDC27 Cell divis 217880_at,N21397, N 996 1489.53 1205.08 1158.59 1229.65CHD9 Chromodoma220586_at,NM_025134 80205 157.58 122.76 129.925 133.285CUL2 Cullin 2; a 203078_at,U83410, N 8453 730.105 585.645 612.005 559.325CUL3 Cullin 3; a 201370_s_aAU145232, 8452 2231.04 1855.25 1765.66 1855.97

SLC17A5 Solute carr 221041_s_aNM_012434 26503 772.15 627.58 628.94 591.85USP32 Ubiquitin s 226505_x_aAI148567, 84669 1133.46 987.685 923.575 919.205USP6 Ubiquitin s 226505_x_aAI148567, 84669 1133.46 987.685 923.575 919.205FANCB Fanconi an 1553244_atNM_152633 2187 189.017 161.903 144.56 149.077FSD1L Protein wit230904_at,W42665, H 405752 211.057 165.317 169.257 160.563EIF5B Eukaryotic 201024_x_aBG261322, 9669 2288.48 1816.09 1960.33 1790.66ZAK Sterile-alp 218833_at,NM_016653 51776 844.265 709.71 650.405 651.175PDE4B Phosphodie203708_at,NM_002600 5142 1511.69 1182.74 1257.57 1259.18ANP32A Acidic (leu 201038_s_aT67821, N 8125 2474.6 2070.02 1918.91 1978.28ARL14 Protein wit220468_at NM_02504 80117 323.62 223.58 356.48 196.3CHEK1 CHK1 check205393_s_aNM_001274 1111 653.14 530.16 507.34 539.33DCLRE1C Artemis pro219678_x_aNM_022487 64421 445.327 371.377 358.347 340.66DDX49 Protein wi 210811_s_aBC000979, 54555 408.21 334.05 297.78 347.89DET1 De-etiolate219641_at,NM_01799 55070 674.84 542.79 554.83 523.7DOCK7 Dedicator o225384_at BF001267 85440 864.73 691.96 685.78 699.11EEA1 Early endo 204840_s_aAI916242, 8411 153.52 127.98 125.09 114.62ETF1 Eukaryotic 201573_s_aM75715, M 2107 2793.39 2167.53 2266.02 2258.87FBXW11 F-box and W209456_s_AB033281 23291 2315.26 1741.41 2308.61 1486.96FNTB Farnesyltra1773_at L00635 2342 866.74 699.95 694.42 686.98GRK6 G protein-c211543_s_AF040752 2870 355.93 239.48 305.66 304.85HSPA14 Member of t219212_at,NM_01629 51182 1738.88 1400.76 1451.58 1321.37IMMP1L Protein con230556_at AA977197 196294 426.59 337.9 341.46 343.22

8-Mar Membrane-a231933_at BE781914 220972 395.82 325.19 324.19 300.67NR4A2 Nuclear rec204622_x_aNM_006186 4929 219.14 175.755 177.775 180.645PABPN1 Poly(A)-bin201544_x_aBF675004, 8106 3185.27 2586.32 2591.03 2594.93PBRM1 Polybromo 223400_s_AF197569 55193 281.16 222.06 229.63 224.51PIK3CB Phosphoinos212688_at,BC003393, 5291 530.735 433.78 433.375 409.635POLA1 Polymerase204835_at,NM_01693 5422 1209.14 976.53 970.39 943.39PRKRIR Inhibitor o 209323_at AF081567 5612 2286.77 1798.12 1878.16 1810.93PSME4 Proteasome212220_at,AI972268, 23198 1349.42 1100.04 1107.02 1046.36RFWD2 Ring finger 234950_s_aAK001278, 64326 851.89 663.16 689.77 692.67RLF Rearranged204243_at,NM_01242 6018 430.4 333.69 354.65 348.54RPS6KA3 Ribosomal 203843_at,AA906056, 6197 2131.39 1695.92 1711.61 1707.45SF3B1 Splicing fa 214305_s_aAW003030, 23451 1981.15 1706.42 1456.09 1611.57SNRPD1 Small nucl 202690_s_aBC001721, 6632 2828.12 2247.05 2277.78 2251.09TERF1 Telomeric 203448_s_aAI347136, 7013 1366.74 1133.34 1071.39 1047.79TPP1 Tripeptidyl 214196_s_AA602532 1200 715.48 593.51 562.73 550.59WDFY3 WD repeat a212606_at AL536319 23001 371.1 298.86 304.84 286.45WDR43 Protein con214662_at,D26488, D 23160 1355.83 1137 1038.4 1076.67ZFP37 Zinc finger 207068_at,NM_00340 7539 302.11 233.29 238.89 251.47ZNF146 Zinc finger 200050_at,NM_007145 7705 2745.55 2322.43 2206.53 2193.39ZNF407 Protein con227768_at,AB051490, 55628 1255.09 910.69 1212.74 899.94ZNF417 Protein wit1558251_aAK055448, 84914 204.45 170.19 156.49 164.18ZNF587 Protein wit1558251_aAK055448, 84914 204.45 170.19 156.49 164.18ZNF652 Zinc finger 205594_at,NM_01489 22834 339.92 249.36 324.7 246.92EML4 Echinoderm 223068_at,AV707345, 27436 1408.24 1095.44 1186.16 1120.16ARHGDIA Rho GDP dis201167_x_aD13989, N 396 2078.63 1644.73 1690.93 1676.91GULP1 GULP engulf204235_s_aAF200715, 51454 1391.51 1123.54 1108.49 1102.57

CASC5 Cancer susc1552680_aNM_02038 57082 379.93 318.18 309.38 279.965DDX6 DEAD (Asp-204909_at,NM_004397 1656 1705.21 1435.32 1470.51 1474.62FYB FYN binding211795_s_aAF198052, 2533 1168.17 1070.6 1098.73 1118.55DHX9 DEAH box p202420_s_aNM_001357 1660 2292.05 1940.47 1841.62 1925.68FGFR1 Fibroblast 210973_s_aM63889, M 2260 1660.42 1270.39 1312.02 1374.1ACVR2A Activin A r 228416_at,AI149508, 92 210.42 172.72 181.91 156.06ALX1 ALX homeob206837_at NM_00698 8092 576.06 436.61 511.63 455.92ARID1B AT rich int 225184_at AK000921 57492 460.75 361.06 385.11 373.92ARL5A ADP-ribosyl226617_at,AW291264 26225 1774.47 1444.21 1438.07 1407.77ATE1 Arginyltra 225497_at,AL589591, 11101 2119.31 1684.95 1746.14 1693.57BRD4 Bromodomain202102_s_aBF718610, 23476 1087.55 874.765 819.5 870.665CCBL2 Protein wit209472_at,BC000819, 56267 813.63 634.51 663.25 663.61CCT6B Chaperonin206587_at NM_00658 10693 251.07 197.78 207.62 205.4CDKL3 Cyclin-depe1561190_aAF087989 51265 330.33 228.22 339.48 232.79CTSA Cathepsin 200661_at NM_00030 5476 2637.25 2171.73 2089.99 2102.32CUGBP1 CUG triplet204113_at,NM_006560 10658 952.22 790.35 735.24 772.06ELK4 ELK4 ETS-d206919_at NM_02179 2005 346.81 285.22 292.5 262.73ERC1 RAB6-intera1555294_aAB053469, 23085 630.715 481.185 582.135 477.415EWSR1 Ewing sarco229966_at,AW089574, 2130 680.37 530.13 556.1 555.79GMDS GDP-mannose204875_s_NM_00150 2762 146.49 109.01 117.1 128.3GNL2 Guanine nuc201948_at,NM_01328 29889 585.21 480.39 460.59 475.12GPATCH4 Member of 224632_at,BE794289, 54865 1616.79 1362.05 1254.35 1302.35LANCL2 LanC lantib218219_s_NM_01869 55915 737.98 598 607.6 579.55PANK2 Pantothena238856_s_BG108346 80025 231.27 191.41 185.08 183.65SNHG4 1564906_atAJ224167, 9782 286.02 228.09 222.44 241.41SNRPN Small nucl 228370_at,BF114870, 6638 362.95 290.81 302.25 286.03TTC27 Protein co 218710_at,NM_01773 55622 1205.54 980.18 984.62 944.17TUBGCP3 Tubulin ga 203690_at,NM_006322 10426 525.715 430.115 440.545 402.62USP53 Member of t230083_at,AW188464, 54532 508.2 428.41 458.27 396.28XRCC2 X-ray repa 207598_x_aNM_005431 7516 525.65 429.07 440.11 400.97YLPM1 YLP motif 212787_at,AI952986, 56252 1237.63 947.617 960.693 950.747MATR3 Matrin 3; a242260_at,BG283790, 9782 1466.79 1175.53 1199.62 1168.91LASS6 LAG1 homol212442_s_aBG289001, 253782 819.883 662.65 661.893 655.897EIF3J Eukaryotic 208264_s_aNM_003758 8669 1874.78 1450.94 1552.98 1497.4TAF15 TAF15 RNA 227884_at,AW296067, 8148 534.62 417.875 434.22 435.045ATR Ataxia tela 209902_at,U49844, U 545 1002.74 827.965 787.5 798.29RBMX RNA binding213762_x_aAI452524, 27316 3896.86 3164.88 3271.47 3112.06RBM4 RNA binding213718_at,BE222257, 5936 309.49 253.09 255.63 240.81ADAM17 ADAM metall205745_x_aNM_003183 6868 1238.3 1028.24 1010.21 999.027ATG7 ATG7 autop218673_s_aNM_006395 10533 661.57 525.085 554.855 524.045CENPA Centromere204962_s_aNM_001809 1058 2375.65 2001.46 1881.22 1906.7CPSF2 Cleavage a 233208_x_aAA583986, 53981 1106.6 932.03 901.75 856.82DIMT1L Protein wi 213598_at,W87688, N 27292 597.24 500.675 490.11 468.25EIF2A Eukaryotic 223015_at,AF212241, 83939 2984.35 2427.23 2490.47 2376.73GSR Glutathione205770_at,NM_000637 2936 3968.16 3235.35 3180.07 3229.94HSPA9 Heat shock 200690_at,AA927701, 3313 1029 830.12 838.79 844.6MAP3K5 Mitogen act203837_at NM_00592 4217 519.15 452.71 413.56 401.12MED31 Member of 236241_at BF593977 51003 312.75 248.27 256.68 257.34

MYOCD Myocardin;237206_at AI452798 93649 277.76 241.56 219.18 217.03NFIL3 Nuclear fac203574_at NM_00538 4783 1005.15 847.61 766.64 842.9NOL10 Protein of 218591_s_aNM_024894 79954 1460.01 1137.4 1228.78 1127.1PAIP1 Poly(A) bin 213754_s_aAW613203, 10605 2433.46 1946.1 2096.75 1905.31PRDM10 Protein con219515_at,NM_02022 56980 519.34 412.4 441.26 410.76RHBDD1 Rhomboid d226945_at AI356895 84236 600.31 483.34 483.26 498.9RHOT1 Ras homolo222148_s_aBF688108, 55288 973.045 784.855 796.395 762.97RNPC3 U11-U12 sn226975_at,BF116157, 55599 413.99 301.67 407.59 304.08SSRP1 Structure s200956_s_aBE795648, 6749 3730.41 3026.93 3033.84 3039.93TRDMT1 tRNA aspart206308_at AJ223333 1787 351.1 255.04 316.43 285.06YME1L1 YME1-like 1232216_at AA828049 10730 121.76 95.32 113.44 90.57ZBTB10 Protein wit233899_x_aAK024296, 65986 298.99 245.88 236.52 245.46ZNF814 Synthetic 60794_f_atAI400621, 84914 237.38 193.11 186.39 197.29PTCD3 Member of 228512_at,AW138833, 55037 624.995 515.015 538.095 511.15SPEN Nuclear rec201996_s_aAL524033, 23013 696.065 579.93 569.47 555.14API5 Apoptosis i233078_at,AK021649, 8539 315.92 262.49 248.42 269.41BLZF1 Basic leuci 1558560_sAI002966, 8548 64.47 57.08 46.78 57.03CDC42BPA CDC42 bindi214464_at,NM_00360 8476 1304.28 1118.9 1049.05 1024.31CREBZF CREB-ATF bZ202979_s_NM_02121 58487 1383.22 1107.6 1153.18 1134.45DNAJC2 Zuotin rela 213097_s_AI338837 27000 1859.95 1556.27 1522.05 1473.12FAM168B Protein of 229946_at BF056651 389039 561.5 465.5 453.97 457.98GTF2F2 General tra209595_at,BC001771, 2963 314.86 241.25 271.43 266.51INO80 INO80 comp225357_s_aAI659419, 54617 519.22 422.61 425.28 431.09LRRFIP1 Leucine ric 223492_s_aBC004958, 9208 361.1 298.51 281.42 307.52MED1 Mediator co203497_at NM_00477 5469 1627.4 1420.35 1225.17 1353.83MSI2 Musashi hom239232_at,AA521410, 124540 194.6 153.53 166.37 161.31NLN Neurolysin;224063_at,BC001644, 57486 339.555 245.245 295.545 282.09PDE7A Phosphodies223358_s_aAW269834, 5150 638.06 529.13 526.97 516.785PPRC1 Peroxisome 203737_s_aNM_015062 23082 1110.25 914.26 889.1 918.34PRICKLE4 Prickle hom223516_s_AF216754 29964 3675.98 2935.49 3109.66 3002.64RASA2 RAS p21 pro230669_at W38444 5922 434.42 353.57 375.36 338.85RNGTT RNA guanyl211387_x_aAB012143, 8732 275.36 217.64 228.38 232.99SP1 Specificity 224754_at,BG431266, 6667 961.503 798.907 844.603 762.97SP3 SP3 transcr232529_at,AU144413, 6670 599.09 473.54 535.43 500.805SYNJ2 Synaptojan210612_s_aAF318616, 8871 413.49 352.5 329.66 336.14SYNRG AP1 gamma s222715_s_BE856321 11276 525.94 451.8 407.31 436.13TAF9B TAF9B RNA p221618_s_AF220509 51616 663.28 539.11 570.82 528.17TARBP2 TAR (HIV-1)203677_s_aNM_00417 6895 1106.4 899.98 901.31 927.81WEE1 WEE1 homolo212533_at,X62048, AJ 7465 1381.59 1080.34 1182.44 1117.2YY1 YY1 transcr224711_at,AI670903, 7528 929.725 771.845 761.94 750.83ZNF131 Zinc finger 1557384_aAL832081, 7690 319.91 243.32 290.32 252.56USP16 Ubiquitin s 218386_x_aNM_006447 10600 1623.26 1302.03 1370.36 1354.51RBM26 Member of t218422_s_aNM_022118 64062 888.09 732.16 703.505 657.265VRK2 Vaccinia re205126_at,NM_006296 7444 1259.77 965.745 1000.52 999.63HNRNPD Heterogeneo200073_s_aM94630, D 3184 2855.91 2299.08 2356.06 2330.02APPL Adaptor pr222538_s_aAW467472, 26060 1145.57 938.46 982.79 918.95CSDE1 Cold shock 222975_s_aAI423180, 7812 2826.46 2354.76 2313.68 2308.14GSPT1 G1 to S pha240452_at AA580082 2935 280.1 192.27 289.66 216.88

HNRNPL Heterogeneo35201_at, X16135, X1 3191 2729.96 2140.4 2437.62 2154.03PSMD1 Protein co 201198_s_AI860431 5707 3972.74 3365 3194.48 3259.89PUS3 Protein wit221277_s_NM_03130 83480 613.05 487.84 566.19 471.61SET SET translo200631_s_aNM_003011 6418 5483.7 4569.61 4625.7 4477.99SMAD4 SMAD family202527_s_aNM_00535 4089 1097.8 877.84 925.12 915.57SNRNP200 Small nucl 214982_at,AK021418, 23020 104.03 82.77 89.83 86.81TAF4 TAF4 RNA p213090_s_AI744029 6874 945.86 800.99 771.87 769.07THOC4 THO complex226320_at,AF047002, 10189 3119.23 2470.1 2672.27 2584.79UBQLN2 Ubiquilin 2 215884_s_AK001029 29978 2542.34 2171.55 2144.18 1998.05VAPA VAMP-associ225198_at,AL571942, 9218 1069.19 788.325 993.195 760.49XPO1 Exportin 1; 208775_at,D89729, D 7514 6251 5202.09 5148.1 5205.8ZFP112 Protein con222237_s_aAC084239, 7771 198.3 171.23 167.44 155.26ZNF225 Protein wit207125_at,NM_01336 7768 119.56 102.3 95.45 97.79STK4 Serine-thre211085_s_aZ25430, BC 6789 155.397 135.193 122.133 125.98SFRS4 Splicing fa 201696_at,NM_005626 6429 823.683 626.827 661.58 651.34RAD23A RAD23 homol201039_s_aBF572938, 5886 2355.93 1956 1997.15 1949.04RBM12B Protein co 51228_at, N36928, AI 389677 455.835 365.78 400.81 374.91CREB1 cAMP respon204314_s_aNM_004379 1385 729.523 599.82 607.187 607.74HSP90AB1 Heat shock 200064_at,AF275719, 3326 8914.19 7486.99 7585.03 7281.05PBX1 Pre-B-cell 205253_at,NM_002585 5087 2268.71 1889.01 1834.24 1875.49ARID4B AT rich int 221230_s_aNM_016374 51742 647.944 553.37 518.186 496.056RFFL Protein wit1552649_aNM_057178 117584 1137.71 994.575 1037.35 970.8ANP32C Acidic nuc 201043_s_aNM_006305 8125 2501.03 2224.51 1948.56 2099.35BDP1 B double pr224227_s_aAF298152, 55814 205.92 179.06 167.13 167.58BICD1 Bicaudal D 1556051_aCA777994 636 216.17 183.41 176.88 183.1C21orf66 Member of 218515_at NM_01663 94104 967.96 775.23 840.62 803.01CDC14A Cell divis 205288_at,NM_00367 8556 113.69 99.88 97.83 86.73CREBBP CREB bindin202160_at,NM_00438 1387 1279.19 1067.05 1097.4 1025.9CTBP2 C-terminal 201219_at,AW269836 1488 635.92 528.37 529.35 535.32DUSP12 Dual specif218576_s_aNM_00724 11266 1647.67 1349.43 1402.25 1375.77EIF3CL Synthetic 210949_s_aBC000533, 8663 5158.53 4388.42 4363.19 4193.88GPX4 Glutathione201106_at,NM_002085 2879 4726.33 3889.35 3973.5 3949.48HERC1 HECT domain240703_s_aAW591969 8925 203.14 185.97 156.59 165.13ITGB5 Integrin be201125_s_NM_00221 3693 3531.53 2964.98 2864.84 3016.26KCNS3 Potassium 205968_at,NM_00225 3790 717.65 562.57 652.43 573.71KIF16B Kinesin fam219570_at NM_02470 55614 673.29 566 538.71 578.62KIN Antigenic d205664_at NM_01231 22944 665.52 568.23 576.35 524.92MBD5 Methyl-CpG220195_at,NM_01832 55777 383.01 302.93 357.42 299.48MYST1 MYST histo221820_s_AK024102 84148 1167.9 997.54 1003.03 931.07PRMT1 Protein arg206445_s_aNM_001536 3276 4804.75 3961.54 4025.68 4061.85RHEB Ras homolog201452_at AW138374 6009 198.62 175.23 154.33 166.17SENP7 SUMO1-sentr223444_at,AL136599, 57337 265.48 218.97 222.31 222.83SF1 Splicing fa 210172_at,D26121, D 7536 664.92 486.55 697.14 477.19SLC5A6 Solute carr 204087_s_aNM_02109 8884 1597.11 1270.39 1424.9 1314.91SMARCC2 Chromatin 1561973_aAL833124 6601 78.29 59.02 62.72 72.99SSB Sjogren sy 201138_s_aBG532929, 6741 3844.79 3261.9 3298.61 3012.45USP47 Member of t223701_s_aAF059318, 55031 786.68 711.24 623.82 631.2ZNF573 Protein wit217627_at,BE515346, 126231 365.76 325.99 287.98 298.31

experimen dChip fold lower bounupper boundifference of means3.2 -2.64 -1.46 -12.57 -5.24

834.757 -2.08 -1.97667 -2.19 -880.007646.06 -1.79 -1.66 -1.93 -508.48300.73 -1.75 -1.67 -1.84 -226372.58 -1.74 -1.56 -1.95 -276.14

139.8 -1.73 -1.54 -1.97 -102.27110.13 -1.73 -1.48 -2.04 -79.92298.47 -1.71 -1.62 -1.82 -213.04895.91 -1.67 -1.58 -1.76 -598.84575.61 -1.65 -1.54 -1.77 -372.06157.36 -1.63 -1.3 -2.14 -98.74927.83 -1.63 -1.56 -1.7 -582.46304.25 -1.62 -1.55 -1.7 -190.01

1164.53 -1.62 -1.515 -1.74 -705.63381.06 -1.6 -1.53 -1.67 -227.17

92.43 -1.6 -1.32 -1.98 -55.1167.19 -1.6 -1.44 -1.78 -40.3

1563.75 -1.59 -1.52 -1.66 -918.45170.98 -1.59 -1.44 -1.77 -100.94179.65 -1.57 -1.46 -1.7 -103.1385.64 -1.565 -1.46 -1.68 -251.74

705.5 -1.56 -1.46 -1.69 -398.03506.95 -1.56 -1.43 -1.72 -286.04

2115.81 -1.56 -1.475 -1.66 -1078.31151.952 -1.5575 -1.3225 -1.915 -86.43107.215 -1.55 -1.36 -1.8 -53.88

1500.5 -1.55 -1.49 -1.61 -818.971053.08 -1.55 -1.46 -1.65 -575.27

781.28 -1.55 -1.45 -1.66 -431649.44 -1.54667 -1.46333 -1.63333 -338.873788.63 -1.54 -1.47 -1.61 -423.56127.76 -1.54 -1.41 -1.69 -69.51

1042.93 -1.535 -1.455 -1.615 -540.435631.917 -1.53467 -1.38933 -1.71267 -233.016

468.4 -1.53 -1.48 -1.59 -249.18250.93 -1.53 -1.39 -1.7 -133.5232.04 -1.53 -1.44 -1.63 -123.83176.44 -1.53 -1.34 -1.77 -93.97288.45 -1.52667 -1.37 -1.73333 -77.9467325.42 -1.525 -1.395 -1.68 -165.34162.62 -1.52 -1.34 -1.75 -84.94

83.3 -1.52 -1.36 -1.71 -43.68166.36 -1.52 -1.37 -1.69 -86.46512.96 -1.52 -1.44 -1.6 -266.92251.94 -1.52 -1.27 -1.88 -130.25656.56 -1.52 -1.44 -1.6 -338.47162.62 -1.52 -1.34 -1.75 -84.94

735.92 -1.52 -1.44 -1.6 -381.52172.55 -1.52 -1.38 -1.69 -90.11

499.9 -1.514 -1.404 -1.636 -235.506374.127 -1.50667 -1.34667 -1.68333 -199.59387.165 -1.5 -1.395 -1.615 -208.03

189.77 -1.5 -1.4 -1.61 -95.09372.54 -1.5 -1.2 -1.99 -185.69572.49 -1.5 -1.44 -1.58 -288.69

625.447 -1.49333 -1.36667 -1.66 -307.063597.47 -1.49 -1.395 -1.595 -196.74

1090.83 -1.49 -1.42 -1.57 -538.23387.87 -1.49 -1.41 -1.58 -190.65

1346.24 -1.485 -1.425 -1.545 -621.15181.44 -1.48 -1.32 -1.67 -87.2559.79 -1.48 -1.39 -1.57 -266.55526.81 -1.48 -1.36 -1.62 -253.785

1278.76 -1.475 -1.415 -1.525 -603.291606.52 -1.47333 -1.4 -1.55667 -761.743592.533 -1.47333 -1.30667 -1.71333 -277.653239.143 -1.4725 -1.3525 -1.62 -114.445

280.33 -1.47 -1.3 -1.69 -132.853202.29 -1.47 -1.41 -1.52 -1493.24

300.04 -1.47 -1.39 -1.55 -140.491206.96 -1.47 -1.41 -1.54 -566.65295.025 -1.47 -1.38 -1.565 -136.645

443.67 -1.46 -1.4 -1.52 -203.45154.15 -1.46 -1.37 -1.56 -71.44

48.68 -1.46 -1.33 -1.61 -22.23701.86 -1.46 -1.37 -1.55 -319.91104.01 -1.46 -1.17 -1.92 -47.66402.88 -1.46 -1.34 -1.6 -183.84568.59 -1.45 -1.345 -1.555 -265.665592.84 -1.45 -1.4 -1.51 -268.61919.76 -1.45 -1.39 -1.52 -414.38595.44 -1.45 -1.37 -1.53 -266.89392.07 -1.45 -1.37 -1.53 -175.53

394.4 -1.45 -1.36 -1.55 -176.95432.02 -1.45 -1.38 -1.52 -192.45172.35 -1.45 -1.24 -1.74 -77.04424.64 -1.45 -1.28 -1.65 -191.11

1390.52 -1.45 -1.4 -1.5 -623.36801.717 -1.445 -1.3575 -1.545 -340.4881890.64 -1.44 -1.37667 -1.51 -1045.47

292.27 -1.44 -1.38 -1.51 -128.09292.27 -1.44 -1.38 -1.51 -128.09

1289.87 -1.44 -1.39 -1.49 -569.98163.83 -1.44 -1.38 -1.51 -72.55155.94 -1.44 -1.31 -1.59 -67.07

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